Abstract
Phospholipase A2 (PLA2) enzymes catalyze hydrolysis of phospholipids in membranes. Elucidation of the kinetics of interfacial enzymatic activity is best accomplished by investigating the interface substrate concentration dependence of the activity, for which appropriate diluents are required. PLA2 is stereo selective toward the L_enantiomers of phospholipids. A novel approach employing D_phospholipids as diluents to perform surface dilution kinetic studies of PLA2 is presented. Activity of bee-venom PLA2 at mixed L+D_DPPC (dipalmitoylphosphatidylcholine) bilayer interfaces was measured as functions of substrate L_DPPC mole fraction and vesicle concentration, using a sensitive fluorescence assay. A model for interface enzymatic activity based on the three-step kinetic scheme of: (i) binding of PLA2 to the bilayer interface; (ii) binding of a lipid to PLA2 at the interface; and (iii) hydrolysis, was applied to the hydrolysis data. Activity profiles showed that D_enantiomers also bind to the enzyme but resist hydrolysis. Activity dependences on vesicle and substrate concentrations could be disentangled, bringing resolution to an outstanding problem in membrane hydrolysis, of separating the effects of the three steps. Individual values of the kinetic parameters of the model including the vesicle-PLA2 equilibrium dissociation constant of step (i), interface Michaelis-Menten-Henri constant for L and D_DPPC of step (ii), and the rate constant for interface hydrolysis, step (iii) were obtained as solutions to equations resulting from fitting the model to the data.
Keywords: Kinetics, Phospholipase A2, Phosphatidylcholine, Membranes/Physical chemistry, Interfacial Enzymology
INTRODUCTION
Investigations of protein-lipid bilayer interactions and their interfacial reaction kinetics need a medium in which the substrate lipid concentration can be varied so as to observe the variation of the reaction velocity as a function of the interface substrate concentration. Bilayer hydrolysis is of significance to membrane biochemistry because the hydrolysis products perform several crucial physiological functions1. An immediate problem that arises in lipid bilayer surface kinetics is the inability to vary interface substrate concentration because bilayers are normally unimolar comprising a single type or mixtures of lipids; all of which are substrates. Micelle forming detergents disrupt membrane structure and therefore are not suitable as neutral diluents2,3. This has been a bottleneck to progress in testing kinetic models of membrane lipid hydrolysis4. The problem is overcome in the case of those enzymes that are stereo-selective toward their substrates by a novel use of mixtures of substrate and non-substrate enantiomers in various proportions to actualize a variable concentration reaction medium. Lipases and phospholipases are a super family of enzymes that exhibit this selectivity5. Phospholipase A2 (PLA2) is selective toward the L_phospholipid and catalyzes hydrolysis of L_phospholipids at the sn-2 bond. The concept of surface dilution kinetics in bilayers, using D_phospholipids as diluents, is demonstrated and a Michaelis-Menten-Henri type of kinetic model for membranes is tested, with the example of phospholipase A2 (PLA2) catalyzed lipid bilayer hydrolysis. Kinetic parameters of the model for membrane hydrolysis are derived. The focus of this work is on the elucidation of the interfacial kinetic scheme. Several excellent kinetic modeling and investigations of PLA2 have been reported6,7. However, the various steps of the kinetic scheme can be dissected experimentally only through surface dilution studies. The parameters of interfacial kinetics result from the physicochemical properties of the membrane. PLA2 enzymes are activated, inhibited, modulated by biophysical behaviors of membranes such as domain formation, phase transitions, rafts etc. which affect any or all of the steps in the kinetics. Membrane biophysical properties as well as direct drug-enzyme binding contribute to inactivation8. Some drug molecules inhibit activity by preventing PLA2 binding to the bilayer interface9. This work is of significance to the biophysical chemistry of interfacial kinetics of PLA2 because the effect of membrane properties on the different kinetic steps can be distinguished.
The kinetics of bee-venom PLA2 catalyzed hydrolysis of L_dipalmitoylphosphatidylcholine (DPPC) in small unilamellar vesicles (SUV) was investigated using D_DPPC as the diluent. Measurements of interface enzymatic activity, defined as the initial reaction velocity per mg of enzyme, were conducted as a function of the mole fraction of the substrate L_DPPC.
Surface dilution employing D_enantiomers was first applied to mixed micelles of bile salts and phospholipids where the lipid portion of the micelle was a mixture of D and L_phospholipids10. Activities at micellar interfaces are high enough for measurement by standard pH-Stat methods so that surface dilution kinetics is observable for lipids dispersed in detergent micelles. The low levels of the more biologically relevant bilayer hydrolysis on the other hand are beyond the precision of pH-Stat.
Recent development of a sensitive fluorescence assay, using the acrylodan labeled rat-intestinal fatty acid binding protein (ADIFAB), permitted the present measurements of the low levels of activity at bilayer interfaces11. Together with D_lipids as diluents, observation of surface dilution kinetics in lipid bilayers is realized.
MATERIALS AND METHODS
Materials
L_DPPC was obtained from Avanti Polar Lipids as lyophilized powders. D_DPPC and bee-venom PLA2 were obtained from Sigma. PLA2 was purified by dialysis against 0.05M Hepes buffer at pH 7.4 for three days, changing the buffer every 8 hours 12. Protein concentration was determined by the extinction coefficient method 12. The dialyzed enzyme was stored at 4°C. The fluorescence probe, ADIFAB, was obtained from FFA Sciences (San Diego, CA).
Kinetic Model for Membrane Hydrolysis
The activity, A, as a function of the substrate lipid mole fraction, XL, for a mixed bilayer vesicle of L and D_phospholipids, where the D_enantiomer is hydrolysis-resistant but binds to the enzyme is 10,
| (1) |
where
| (2) |
| (3) |
based on the three step kinetic scheme (Fig. 1):
FIGURE 1.

Illustration of the kinetic scheme. L and D refer to the L_ and D_enantiomers
(i) enzyme- interface binding, with association and dissociation rate constants k1 and k−1 respectively, and equilibrium dissociation constant denoted by , to form the interface-bound enzyme E*; (ii) enzyme-substrate lipid binding at the active site to form the interfacial complex E*L or E*D with association and dissociation rate constants k2L and k−2L or k2D and k−2D respectively and is the interfacial equilibrium D_enantiomer-enzyme dissociation constant and (iii) substrate lipid hydrolysis with rate constant k313. [vesicles] is the concentration of vesicles in solution; n is the number of binding sites per vesicle. The subscript S on the concentrations refers to interface or surface concentrations. [L+D_DPPC]S is the constant total lipid surface concentration, given by the outer monolayer surface concentration,
| (4) |
where N, Aves, and Rves are the vesicle lipid aggregation number, area and radius of DPPC SUV, respectively. The outer monolayer aggregation number is taken to be N/2. N0 is Avogadro’s number. The interface substrate concentration is [L_DPPC]S = XL[L+D_DPPC]S. Because [L+D_DPPC]S is constant, the molar fraction XL is used to express the variable substrate concentration.
| (5) |
is the interface Michaelis-Menten-Henri parameter defined by the interface reaction rate constants k3, k2L and k−2L.
In the limit KDS → ∞ for non-binding diluents, the classic equation of Deems et al. for lipid-detergent mixed micellar interfaces is recovered 13. Furthermore, if the hydrolysis-resistant non-substrate component binds to the enzyme, then it is functionally similar to a competitive inhibitor. The present eq. 1 is identical to the equation derived by Berg et al. for activity in the presence of competitive inhibitors (eq. 1 in the reference cited) 14.
The activity, according to the model in eq.1, depends on the substrate concentration quantified by the L_DPPC mole fraction and the concentration of vesicles given by
| (6) |
where N is the number of lipid molecules in a vesicle.
Experimental Methods
Activity, A, as a function of XL for each of several vesicle concentrations obtained by varying the total lipid concentration (eq.6) was measured. Fitting of the data of A vs. XL to eq. 1 yields the values of a1 and a2. The vesicle concentration dependence of a1 was then fit to eq. 2. Results of the fits of a1 vs. [vesicles] together with a2 form a system of equations which was solved for the individual values of the kinetic parameters, KS, KMS, KDS, and k3. Software of Kaleidagraph 4.1 was used to perform non-linear curve fits based on an iterative Levenberg-Marquaradt algorithm.
PLA2 activity measurements were conducted at 37 °C for eight different total lipid ([L+D_DPPC]) concentrations from 10 μM to 400 μM and for various mole fractions, XL, of the substrate L_DPPC at each of these concentrations. Sample temperature was maintained by a circulating water bath. Activity was measured using a new modified assay reported in recent work 11. The activity measurement assay relies on the shift in the ADIFAB fluorescence, excited at 386 nm, from 432 to 505 nm upon binding of ADIFAB to the hydrolysis products that partition into the aqueous phase from the bilayer15. The ADIFAB fluorescence response, quantified by the generalized polarization, GP, given by 16,17
| (7) |
where I505 and I432 are the fluorescence emission intensities at 505 nm and 432 nm respectively, is linearly proportional to the concentration of hydrolysis products11.
Fluorescence emission intensities of ADIFAB, included in the reaction mixture of lipid vesicles + 1 mM of CaCl2 in Hepes buffer, at 432 and 505 nm were recorded continuously following addition of enzyme, using the Multi option mode of a Fluoromax-4 Spectrometer (Horiba Scientific). In this mode of operation, the spectrometer grating swivels between two or more wavelength positions to measure the fluorescence intensities at user selected wavelengths at appropriately specified slew rates. In the present study the two wavelengths were 432 nm and 505 nm. The time to swivel between the two wavelengths was about 500 μs and intensities were recorded at both of these wavelengths every 6 seconds. The rapid swiveling speeds makes the measurements almost simultaneous and continuous kinetic data are obtained.
The GP calculated from these intensities, using eq. 7, as a function of time represents the time course of hydrolysis. The initial temporal rate of GP variation was converted to activity in units of μM of product/min/mg of enzyme using the slope of the calibration curve of GP vs. known amounts of equimolar mixtures of hydrolysis products dispersed in DPPC at the same total lipid concentration 11. Calibration measurements were conducted at every single DPPC concentration for which activity was measured 18. The calibration measurements also give the partition coefficient of the LPPC / PA mixtures in DPPC. These results were reported recently18. Conductance of the ADIFAB fluorescence assay to determine PLA2 activity was described in detail in a previous publication11,12.
Dynamic Light scattering measurements (DLS) were conducted to determine the hydrodynamic radii of the mixed vesicles of L_ and D_DPPC vesicles on DynaPro Nanostar Model WDPN06 (Wyatt Technologies), equipped with GaAs laser (120mW) operating at a nominal wavelength of 658nm. The scattered light was collected at 90° by a solid state Single Photon Counting Module (SPCM) detector. The sampling time was set to an optimum value to obtain a fully decaying intensity correlation function (ICF), which was typically 10 seconds. The ICF’s were single exponential decays with baselines that were unity within the precision of the measurements. The exponential fit to ICF yielded the translational diffusion coefficient, Dt, of the particles in the sample. The hydrodynamic radius was then derived from Dt using the Stokes-Einstein equation19. All sample solutions were filtered through 0.2 μm Whatman nylon syringe filters. The temperature of the sample solutions was controlled by an internal Peltier effect heat pump with an accuracy of ±0.01°C.
The surface area of vesicle (Aves) was calculated from the average radius of DPPC SUV measured by DLS. The vesicle lipid aggregation number, N, was calculated assuming the phospholipids to form the spherical shell of a sphere of radius given by DLS. The shell thickness was set equal to twice the length of the lipid molecule. Dividing the shell volume by the lipid molecular volume gave the number N. The phospholipid length was obtained from ChemDraw 3D as 30.9 Å and volume was calculated from the Vander Waals radii to be 796.4 Å3,20.
Sample Preparation
The vesicles for enzymatic activity were prepared by first dissolving calculated amounts of L_ and D_phospholipids in ethanol. The ethanol solution was vortexed thoroughly to produce a clear solution, which was then dried under dry N2 flux to produce a film of lipid. Required amount of the Hepes buffer (pH=7.4) was then added to the dry film to achieve the final desired lipid concentration. Small unilamellar vesicles (SUV) of DPPC were prepared by vortexing the DPPC solution for 5 min followed by sonication in an ultrasonic bath (model no. G112SP1G from Laboratory Supplies Inc., NY) for 20–25 minutes. The ultrasound power output was 80 watts.
RESULTS
Figure 2 shows the static fluorescence spectra of ADIFAB in Hepes buffer and in SUVs of DPPC before and one hour after addition of PLA2. The appearance of the peak at 505 nm is a signature of the presence of the hydrolysis reaction products.
FIGURE 2.
Fluorescence emission spectra of free and hydrolysis-product bound ADIFAB.
Reaction progress curves of hydrolysis of L_DPPC, are represented by the time variation of the GP. The GP calculated from the values of the continuously monitored fluorescence intensities at 432 nm and 505 nm, are shown for a few representative vesicle and substrate (L_DPPC) mole fractions (with total lipid concentration, [L +D_DPPC] = 50 μM) in Fig. 3a and Fig. 3b respectively.
FIGURE 3.
Reaction progress curves, of PLA2 catalyzed hydrolysis of L+D_DPPC SUVs, represented by the time dependence of the GP of ADIFAB fluorescence for various (a) lipid or vesicle concentrations and (b) substrate mole fraction at a constant total lipid concentration [L+D_DPPC] = 50 μM. The lines are fits to the data in the initial linear region.
PLA2 activity, derived from the initial slope and the calibration curves (as described in Methods) as a function of the substrate mole fraction, XL, is shown in Fig. 4, for each of the different total lipid or vesicle concentrations. The error bars, typically ±8 % are standard deviations from several repeated measurements at a few of the concentrations.
FIGURE 4.
Bee-venom PLA2 activity dependence on interface substrate concentration, expressed in mole fraction of the substrate L_DPPC, in L+D_DPPC mixed vesicles, for various vesicle concentrations obtained by varying the total lipid concentration denoted by [DPPC]. The curves are fits to eq. 1, which gives a1 and a2 for each of the data sets.
The activity vs. XL profile in Fig. 4 is different from the usually observed occurrence of saturation at high concentrations in reaction kinetics. The observed behavior results when the D_DPPC also binds to the enzyme but resists hydrolysis, as shown by the model derived for kinetics in the presence of diluents like D_DPPC and described briefly below10.
The negative sign in the denominator in eq. 1 is a consequence of the presence of a competitively binding but hydrolysis-resistant component which leads to a continuous non-saturating increase in activity with XL. If the D_enantiomer were to not bind, then KDS → ∞, leading to a2 = −1/k3. Activity vs. XL would then exhibit the well-known saturation behavior. The observed behavior in Fig. 4 therefore shows that the D_enantiomer binds to the enzyme but resists hydrolysis.
Fitting of eq. 2 to the data in Fig. 4 for each of the concentration yields a1 and a2 for each of the eight total lipid concentration investigated. a2 (eq. 3) is a constant that depends on the kinetic parameters only and not on sample properties of XL and [vesicles]. The numerical value of a2 and its uncertainty obtained from the fit was
| (8) |
a1 on the other hand depends on [vesicles] according to eq. 2. Figure 5 illustrates the dependence of a1 on [vesicles]. The vesicle concentrations were calculated as described in Methods (eq. 6). Fitting the data of Fig. 5 with eq. 2 gave the following two equations:
| (9) |
and
FIGURE 5.
Dependence of a1, obtained from fitting eq. 1 to each of the data sets in Fig. 4, on [vesicles]. The curve is a fit to eq. 2, which gives eq. 9 and 10.
| (10) |
The system of three equations from eq. 8–10 contains the four unknown parameters k3, KMS, KDS, and KS/n. KS and the number of binding sites per vesicle, n, occur grouped together in the equations and therefore the quantity KS/n is solved for as one entity. The numerical value of the surface lipid concentration [L+D_DPPC]S required for solving the equations was calculated using eq. 4 with the vesicle radius, Rves = 42 nm obtained as an average of DLS measurements on several samples of varying L to D_DPPC ratios and total lipid concentrations. The solutions for the parameters were solved for iteratively as described below:
In mixed bilayer interfaces, the enzymatic activity is highest when XL_DPPC = 1. For XL_DPPC = 1, eq. 1 can be written as
| (11) |
where
and
The activity vs. [vesicles] data were fit to eq. 11. The fit gives the values of B and C. The data and the fit are shown in Fig. 6. The saturation value of the activity is B and its value from the fit was,
FIGURE 6.
Bee-Venom PLA2 activity dependence on vesicle concentration, for XL_DPPC = 1. The curve is the fit to eq. 11, which gives the values of B and C.
| (12) |
The errors quoted in the numerical results of the fit in eq. 8–10 and eq. 12 are the uncertainties given by the fitting routine. The starting value of k3 in the iteration procedure was set to B, which means that [L_DPPC]S ≫ KMS in the first approximation. Substitution of k3 = 333 in eq. 3 yields the first value of KMS/KDS. These values of k3 and KMS/KDS were then used in eq. 9 and 10 to obtain the first values of KMS and KS/n, respectively. KMS was then substituted back in eq. 12 to recalculate the next approximation of k3. The surface lipid concentration [L_DPPC]S is required for the second and higher approximations of k3. The second iteration with this value of k3 gives the second set of KMS, KDS and KS/n. This process was repeated until the values converged. The final values are given in Table 1.
Table 1.
Numerical values for the kinetic parameters of bee-venom PLA2 activity on DPPC vesicles.
| KMS/10−10 (Mcm−2) | KDS/10−10 (Mcm−2) | KS/n/10−9 (M) | KS/10−5 (M)a | k3 (μM/min/mg) |
|---|---|---|---|---|
| 1.4±0.4 | 0.6±0.02 | 6.8±1.4 | 3.6±0.3 | 375±34 |
Number of binding sites n, required to calculate KS, was estimated using eq. 13.
The number of binding sites, n, is required to determine KS from KS/n. Following Deems et al., the value of n was calculated from the area per binding site which was set to be the area of about five phospholipid head groups 13. Accordingly, the number of binding sites n can be calculated as
| (13) |
where Aves and Alipid are the surface area of vesicle and phospholipid head group, respectively. Alipid was taken to be 85 Å2 13 and Aves was calculated from the average radius of DPPC SUV measured by DLS. The errors in the kinetic parameters are the calculated propagated errors due to the uncertainties in the fitted values shown in eq.8–10 and eq. 12. Contributions to these errors from uncertainties in the aggregation number resulting from the spread in the vesicle radius (data given in the next section) are less than the quoted error values.
DISCUSSION
D_phospholipids as diluents made possible an investigation of interface substrate concentration dependence of PLA2 activity in bilayers and derivation of the individual kinetic parameters of the various kinetic steps; thus bringing resolution to an outstanding problem in membrane hydrolysis of disentangling the effects of the coupled steps present in interface kinetics. The present data as in Fig. 4 and 6 vividly capture the features of the kinetic model based on the Michaelis-Menten-Henri scheme. The profiles in Fig. 4 show that D_enantiomers are hydrolysis-resistant but bind to the enzyme. The data in Fig. 6 show dependence of activity on [vesicles] which is a signature of the presence of enzyme hopping between vesicles.
Jain et al. introduced 2-hexadecyl-sn-glycero-3-phosphocholine (2H-GPC), a micelle forming amphiphile, as a neutral diluent and used it to study kinetics in the scooting mode with 1,2-dimyristoyl-sn-glycerophosphomethanol (DMPM) vesicles 6. The method used in that work was restricted to the scooting mode and cannot separate and yield the different kinetic parameters. More importantly, the use of micelle forming detergents as diluents in bilayer as well as in micellar kinetics is problematic.
A basic requirement a diluent must meet is that their presence must not alter the properties of the kinetic medium. 2H-GPC like other detergent diluents does not satisfy this criterion. DMPM vesicles with 2H-GPC at mole fraction > 30 %, break down 6. Use of detergents as diluents dates back to early experiments of PLA2 kinetic studies on phospholipids dispersed in micelles. Kinetic assays of phospholipase activity have been conducted mostly with phospholipids dispersed in micelles of detergents like triton-X100, bile salts, and zwitterionic detergents 12,13,21. The substrate concentration was varied by varying the lipid to detergent ratio. This also changes the micelle aggregation number and thereby the micelle concentration. Even at constant lipid to detergent ratio, micelle size changes with concentration 10,22. Whether a diluent binds to the enzyme or not is not important (of course it must not have a much greater affinity than the substrate, such that it precludes activity). The mathematical model can easily include diluent-enzyme binding as done in this work.
D_lipids present the best solution for conducting surface dilution studies and, to the best of our knowledge, we have used them for the first time in this role to observe interface substrate concentration dependence of PLA2 activity in membranes over a wide range. Using D_lipids as diluents has many advantages and is most appropriate. Experiments conducted show that key vesicle properties do not change with L to D_lipid ratio. ESR experiments showed that the membrane properties of polarity and microviscosity remained unchanged. The gel to liquid phase transition temperatures, which are leading indicators of intermolecular interactions, of D_DPPC, L_DPPC and their mixtures in various proportions were verified to be identical at 41°C 10. The vesicle size does not change with vesicle concentration or with substrate to diluent ratio. This was verified by DLS measurements. The vesicle radii did not show any remarkable dependence on the L and D_DPPC mixture proportions and also on total lipid concentration (Fig. 7). In any case, substrate concentration in vesicles is affected only by the mole fraction of L_DPPC and not by the size, because of the large radius to bilayer shell thickness in vesicles. In addition, effects of polydispersity in vesicle radii on substrate concentration are mitigated in vesicles but not so for micelles.
FIGURE 7.
Dynamic Light Scattering profiles of (a) [L+D_DPPC] vesicle solutions for various mole fractions of L_DPPC and (b) [L_DPPC] vesicles for various concentrations. Peak positions give the hydrodynamic radii of aggregates.
Another outstanding problem in PLA2 enzymology is the existence of isozyme-lipid specificity 23. Bilayer surface dilution kinetic investigations can be of value in this area. Interface microstructure plays a key role in PLA2 activity. The phenomenon, referred to as “interface quality effects” is known to exist, but lacks complete mechanistic understanding 4,12,24,25. Elucidation of the micro structural origin of these effects becomes possible if kinetic models can be tested and the derived kinetic parameters shown to be specific to the type of lipid, enzyme, and interface; with the rationale being that such effects are expressed through the kinetic parameters. The present example of bee-venom PLA2-DPPC bilayers is an illustration. a2 is an order of magnitude smaller than a1 at the higher vesicle concentration (above total lipid concentrations of 50 μM), making the activity vs. substrate concentration appear linear. The smallness of the parameter a2 results when KMS ≅ KDS. Physically this means that the interfacial equilibrium binding constant of the enzyme to either D or L_DPPC is the same and that the rate constant, k3, of the chemical step is < the interfacial enzyme-lipid dissociation rate constant, k−2L for bee-venom PLA2 at DPPC SUV interfaces.
The model investigated in this work is for the substrate concentration dependence of the activity (slope) in the initial linear or steady state period, where product accumulation, substrate depletion, and activation or inhibition by products are as yet not pertinent. Effects are specific to the type of products generated by the particular phospholipase. Lysolipids generated by PLA2 inhibit the enzyme 26. Product induced effects and substrate depletion manifest as non-linearity at longer times in the product time release curves 14,27 and therefore not of consequence to the present data on the initial reaction velocities.
CONCLUSIONS
Interface substrate concentration dependence of phospholipase A2 activity on lipid bilayers using D_phospholipids as diluents was investigated. The observed interfacial PLA2 activity dependence on bilayer substrate and vesicle concentrations was described by a modified Michaelis-Menten-Henri model for interfacial kinetics. Kinetic parameters were extracted from fitting the model to the data. D_lipid diluents together with the sensitive fluorescence assay provide a method for investigating any lipid system and any kinetic model. The PLA2 studied here is a representative of lipolytic enzymes. The experiments and modeling have direct relevance to delineating the kinetics of lipolytic enzymes in general, because other lipolytic enzymes also act on L-phospholipids at bilayer interfaces. Without surface dilution kinetics, the different steps in a multi-step process cannot be disentangled. The ability to perform bilayer surface dilution kinetics, separate the effects of interface binding and lipid-enzyme binding and derive the individual values of the kinetic parameters is a step forward in membrane enzymology and kinetics.
Acknowledgments
The authors acknowledge support of grant 1SC3GM096876 from NIH and awards from the Office of Research and Sponsored Programs, CSU Northridge.
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