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. 1996 Feb 20;93(4):1363–1365. doi: 10.1073/pnas.93.4.1363

Pufferfish and new paradigm for comparative genome analysis.

B F Koop 1, J H Nadeau 1
PMCID: PMC39942  PMID: 8643636

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Selected References

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  1. Adams M. D., Kerlavage A. R., Fleischmann R. D., Fuldner R. A., Bult C. J., Lee N. H., Kirkness E. F., Weinstock K. G., Gocayne J. D., White O. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Nature. 1995 Sep 28;377(6547 Suppl):3–174. [PubMed] [Google Scholar]
  2. Altschul S. F., Boguski M. S., Gish W., Wootton J. C. Issues in searching molecular sequence databases. Nat Genet. 1994 Feb;6(2):119–129. doi: 10.1038/ng0294-119. [DOI] [PubMed] [Google Scholar]
  3. Ambrose C., James M., Barnes G., Lin C., Bates G., Altherr M., Duyao M., Groot N., Church D., Wasmuth J. J. A novel G protein-coupled receptor kinase gene cloned from 4p16.3. Hum Mol Genet. 1992 Dec;1(9):697–703. doi: 10.1093/hmg/1.9.697. [DOI] [PubMed] [Google Scholar]
  4. Bassett D. E., Jr, Boguski M. S., Spencer F., Reeves R., Goebl M., Hieter P. Comparative genomics, genome cross-referencing and XREFdb. Trends Genet. 1995 Sep;11(9):372–373. doi: 10.1016/s0168-9525(00)89109-x. [DOI] [PubMed] [Google Scholar]
  5. Baxendale S., Abdulla S., Elgar G., Buck D., Berks M., Micklem G., Durbin R., Bates G., Brenner S., Beck S. Comparative sequence analysis of the human and pufferfish Huntington's disease genes. Nat Genet. 1995 May;10(1):67–76. doi: 10.1038/ng0595-67. [DOI] [PubMed] [Google Scholar]
  6. Brenner S., Elgar G., Sandford R., Macrae A., Venkatesh B., Aparicio S. Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome. Nature. 1993 Nov 18;366(6452):265–268. doi: 10.1038/366265a0. [DOI] [PubMed] [Google Scholar]
  7. Britten R. J. Rates of DNA sequence evolution differ between taxonomic groups. Science. 1986 Mar 21;231(4744):1393–1398. doi: 10.1126/science.3082006. [DOI] [PubMed] [Google Scholar]
  8. Grosson C. L., MacDonald M. E., Duyao M. P., Ambrose C. M., Roffler-Tarlov S., Gusella J. F. Synteny conservation of the Huntington's disease gene and surrounding loci on mouse Chromosome 5. Mamm Genome. 1994 Jul;5(7):424–428. doi: 10.1007/BF00357002. [DOI] [PubMed] [Google Scholar]
  9. Koop B. F., Hood L. Striking sequence similarity over almost 100 kilobases of human and mouse T-cell receptor DNA. Nat Genet. 1994 May;7(1):48–53. doi: 10.1038/ng0594-48. [DOI] [PubMed] [Google Scholar]
  10. Koop B. F. Human and rodent DNA sequence comparisons: a mosaic model of genomic evolution. Trends Genet. 1995 Sep;11(9):367–371. doi: 10.1016/s0168-9525(00)89108-8. [DOI] [PubMed] [Google Scholar]
  11. Maruyama T., Imai H. T. Evolutionary rate of the mammalian karyotype. J Theor Biol. 1981 May 7;90(1):111–121. doi: 10.1016/0022-5193(81)90125-9. [DOI] [PubMed] [Google Scholar]
  12. Morizot D. C., Siciliano M. J. Comparative gene mapping in fishes. Isozymes Curr Top Biol Med Res. 1983;10:261–285. [PubMed] [Google Scholar]
  13. Nadeau J. H., Grant P. L., Mankala S., Reiner A. H., Richardson J. E., Eppig J. T. A Rosetta stone of mammalian genetics. Nature. 1995 Jan 26;373(6512):363–365. doi: 10.1038/373363a0. [DOI] [PubMed] [Google Scholar]
  14. Nadeau J. H. Maps of linkage and synteny homologies between mouse and man. Trends Genet. 1989 Mar;5(3):82–86. doi: 10.1016/0168-9525(89)90031-0. [DOI] [PubMed] [Google Scholar]
  15. Nadeau J. H., Taylor B. A. Lengths of chromosomal segments conserved since divergence of man and mouse. Proc Natl Acad Sci U S A. 1984 Feb;81(3):814–818. doi: 10.1073/pnas.81.3.814. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Nasir J., Lin B., Bucan M., Koizumi T., Nadeau J. H., Hayden M. R. The murine homologues of the Huntington disease gene (Hdh) and the alpha-adducin gene (Add1) map to mouse chromosome 5 within a region of conserved synteny with human chromosome 4p16.3. Genomics. 1994 Jul 1;22(1):198–201. doi: 10.1006/geno.1994.1361. [DOI] [PubMed] [Google Scholar]
  17. Ono S. Ancient linkage groups and frozen accidents. Nature. 1973 Aug 3;244(5414):259–262. doi: 10.1038/244259a0. [DOI] [PubMed] [Google Scholar]
  18. Rast J. P., Haire R. N., Litman R. T., Pross S., Litman G. W. Identification and characterization of T-cell antigen receptor-related genes in phylogenetically diverse vertebrate species. Immunogenetics. 1995;42(3):204–212. doi: 10.1007/BF00191226. [DOI] [PubMed] [Google Scholar]
  19. Sherrington R., Rogaev E. I., Liang Y., Rogaeva E. A., Levesque G., Ikeda M., Chi H., Lin C., Li G., Holman K. Cloning of a gene bearing missense mutations in early-onset familial Alzheimer's disease. Nature. 1995 Jun 29;375(6534):754–760. doi: 10.1038/375754a0. [DOI] [PubMed] [Google Scholar]
  20. Trower M. K., Orton S. M., Purvis I. J., Sanseau P., Riley J., Christodoulou C., Burt D., See C. G., Elgar G., Sherrington R. Conservation of synteny between the genome of the pufferfish (Fugu rubripes) and the region on human chromosome 14 (14q24.3) associated with familial Alzheimer disease (AD3 locus) Proc Natl Acad Sci U S A. 1996 Feb 20;93(4):1366–1369. doi: 10.1073/pnas.93.4.1366. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Uberbacher E. C., Mural R. J. Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach. Proc Natl Acad Sci U S A. 1991 Dec 15;88(24):11261–11265. doi: 10.1073/pnas.88.24.11261. [DOI] [PMC free article] [PubMed] [Google Scholar]

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