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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2014 Jan 18;70(Pt 2):o157. doi: 10.1107/S1600536814000737

2-(1,3-Benzodioxol-5-yl)-1H-benzimid­azole

Nadir Ghichi a, Mohamed Amine Benaouida a, Ali Benosmane a,*, Ali Benboudiaf a, Hocine Merazig a
PMCID: PMC3998317  PMID: 24764878

Abstract

The asymmetric unit of the title compound, C14H10N2O2, contains two independent mol­ecules. In each mol­ecule, the benzodioxole ring system displays an envelope conformation, with the methyl­ene C atom located at the flap deviating by 0.081 (2) and 0.230 (2) Å from the mean plane formed by the other atoms. The dihedral angles between the benzo­imidazole ring system (all atoms) and the benzodioxole benzene ring are 15.35 (6) and 10.99 (7)°. In the crystal, mol­ecules are linked by N—H⋯N hydrogen bonds into chains running along the [101].

Related literature  

For the biological activity of imidazole derivatives and their use as inhibitors of neurodegenerative disorders and as anti­tumor drugs, see: Park et al. (1977). For related imidazole compounds, see: Andreani et al. (2005); Xu et al. (2010).graphic file with name e-70-0o157-scheme1.jpg

Experimental  

Crystal data  

  • C14H10N2O2

  • M r = 238.24

  • Monoclinic, Inline graphic

  • a = 8.7454 (7) Å

  • b = 15.2824 (11) Å

  • c = 16.9487 (13) Å

  • β = 91.974 (5)°

  • V = 2263.9 (3) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 293 K

  • 0.03 × 0.02 × 0.01 mm

Data collection  

  • Nonius KappaCCD diffractometer

  • 13101 measured reflections

  • 4003 independent reflections

  • 3422 reflections with I > 2σ(I)

  • R int = 0.018

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.034

  • wR(F 2) = 0.088

  • S = 1.02

  • 4003 reflections

  • 325 parameters

  • H-atom parameters constrained

  • Δρmax = 0.19 e Å−3

  • Δρmin = −0.18 e Å−3

Data collection: KappaCCD Server Software (Nonius, 1999); cell refinement: KappaCCD Server Software; data reduction: DENZO and SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814000737/xu5756sup1.cif

e-70-0o157-sup1.cif (21.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814000737/xu5756Isup2.hkl

e-70-0o157-Isup2.hkl (192.2KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814000737/xu5756Isup3.cml

Additional supporting information: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1N⋯N4i 0.86 1.93 2.7761 (15) 168
N3—H3N⋯N2 0.86 1.96 2.8053 (16) 168

Symmetry code: (i) Inline graphic.

Acknowledgments

We thank all researchers of the CHEMS Research Unit, University of Constantine 1, Algeria, for their valuable assistance and the MESRS (Algeria) for financial support.

supplementary crystallographic information

1. Comment

Owing to the promising biological activities as inhibitors of neurodegenerative disorders and antitumor drugs (Park et al., 1977), most of these investigations were carried out with imidazole (Andreani et al., 2005; Xu et al., 2010).

A view of the molecular structure of (I) with numbering Scheme is Shown in Fig1. In the crystal, intermolecular N—H···N hydrogen bond Fig2, link the molecules into chains running along the [101] direction.

2. Experimental

A mixture of 1,2-diaminebenzene (2.3 g) and benzo[d][1,3]dioxole-5-carbaldehyde (0.02 mole) in ethanol (60 ml) was refluxed for 6 h. The yellow crystals obtained are filter and rinsed by a mixture of water ice ethanol, the recrystalization is done in excess of chloroform in 15 days.

3. Refinement

The H atoms attached to C atoms and N atom were fixed geometrically and treated as riding with C—H = 0.93 Å (aromatic) or 0.97 Å (methylene) and N—H = 0.86 Å with Uiso(H) = 1.2Ueq(C,N).

Figures

Fig. 1.

Fig. 1.

View of the molecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

Partial view along the b axis of the crystal packing of the title compound, showing the hydrogen bonds as dashed lines (see Table 1 for details).

Crystal data

C14H10N2O2 F(000) = 992
Mr = 238.24 Dx = 1.398 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 5620 reflections
a = 8.7454 (7) Å θ = 2.5–25.1°
b = 15.2824 (11) Å µ = 0.10 mm1
c = 16.9487 (13) Å T = 293 K
β = 91.974 (5)° Prism, yellow
V = 2263.9 (3) Å3 0.03 × 0.02 × 0.01 mm
Z = 8

Data collection

Nonius KappaCCD diffractometer 3422 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.018
Graphite monochromator θmax = 25.1°, θmin = 1.8°
CCD rotation images, thick slices scans h = −10→10
13101 measured reflections k = −18→18
4003 independent reflections l = −18→20

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088 H-atom parameters constrained
S = 1.02 w = 1/[σ2(Fo2) + (0.0405P)2 + 0.8431P] where P = (Fo2 + 2Fc2)/3
4003 reflections (Δ/σ)max = 0.001
325 parameters Δρmax = 0.19 e Å3
0 restraints Δρmin = −0.18 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.16720 (13) 0.28274 (7) 0.48294 (6) 0.0245 (3)
H1N 0.1584 0.2651 0.4348 0.029*
N2 0.27132 (13) 0.34182 (7) 0.59250 (6) 0.0248 (3)
N3 0.46175 (13) 0.33066 (7) 0.72874 (7) 0.0268 (3)
H3N 0.4134 0.3292 0.6837 0.032*
N4 0.59892 (13) 0.28499 (7) 0.83388 (6) 0.0251 (3)
O1 0.83709 (13) 0.38755 (9) 0.37149 (7) 0.0532 (3)
O2 0.79659 (12) 0.45860 (7) 0.48949 (7) 0.0413 (3)
O3 0.51495 (14) −0.07450 (7) 0.63889 (7) 0.0452 (3)
O4 0.36723 (14) 0.03150 (7) 0.57597 (6) 0.0439 (3)
C1 0.43467 (16) 0.33554 (9) 0.47685 (8) 0.0248 (3)
C2 0.46177 (17) 0.29304 (10) 0.40626 (9) 0.0330 (3)
H2 0.3889 0.2543 0.3855 0.040*
C3 0.59527 (18) 0.30704 (11) 0.36603 (9) 0.0405 (4)
H3 0.6133 0.2787 0.3187 0.049*
C4 0.69848 (17) 0.36405 (10) 0.39901 (9) 0.0342 (4)
C5 0.89677 (19) 0.45149 (10) 0.42461 (11) 0.0414 (4)
H5A 0.9041 0.5075 0.3980 0.050*
H5B 0.9984 0.4346 0.4437 0.050*
C6 0.67386 (16) 0.40628 (9) 0.46969 (9) 0.0290 (3)
C7 0.54339 (15) 0.39333 (9) 0.51010 (8) 0.0260 (3)
H7 0.5273 0.4217 0.5577 0.031*
C8 0.29278 (15) 0.32083 (8) 0.51781 (7) 0.0219 (3)
C9 0.12289 (16) 0.31528 (9) 0.60706 (8) 0.0250 (3)
C10 0.03920 (17) 0.32189 (9) 0.67524 (8) 0.0316 (3)
H10 0.0810 0.3474 0.7209 0.038*
C11 −0.10750 (18) 0.28935 (10) 0.67265 (9) 0.0380 (4)
H11 −0.1653 0.2928 0.7176 0.046*
C12 −0.17177 (18) 0.25144 (10) 0.60455 (10) 0.0374 (4)
H12 −0.2712 0.2299 0.6052 0.045*
C13 −0.09151 (16) 0.24510 (9) 0.53635 (9) 0.0308 (3)
H13 −0.1348 0.2202 0.4908 0.037*
C14 0.05686 (15) 0.27748 (8) 0.53860 (8) 0.0242 (3)
C15 0.53562 (15) 0.17347 (9) 0.73203 (8) 0.0239 (3)
C16 0.63003 (16) 0.11017 (9) 0.76669 (9) 0.0301 (3)
H16 0.6944 0.1257 0.8092 0.036*
C17 0.63104 (18) 0.02407 (10) 0.73960 (10) 0.0365 (4)
H17 0.6943 −0.0181 0.7631 0.044*
C18 0.53483 (17) 0.00446 (9) 0.67688 (9) 0.0329 (3)
C19 0.3884 (2) −0.06069 (11) 0.58423 (10) 0.0455 (4)
H19A 0.4097 −0.0866 0.5335 0.055*
H19B 0.2967 −0.0875 0.6039 0.055*
C20 0.44481 (17) 0.06728 (10) 0.64038 (8) 0.0304 (3)
C21 0.44051 (17) 0.15187 (9) 0.66618 (8) 0.0293 (3)
H21 0.3776 0.1933 0.6414 0.035*
C22 0.53328 (15) 0.26200 (9) 0.76528 (7) 0.0227 (3)
C23 0.48053 (16) 0.40285 (9) 0.77669 (8) 0.0272 (3)
C24 0.43107 (19) 0.48911 (10) 0.76926 (9) 0.0371 (4)
H24 0.3734 0.5080 0.7254 0.045*
C25 0.4717 (2) 0.54506 (10) 0.83015 (10) 0.0415 (4)
H25 0.4415 0.6033 0.8271 0.050*
C26 0.5574 (2) 0.51643 (10) 0.89636 (9) 0.0395 (4)
H26 0.5823 0.5561 0.9364 0.047*
C27 0.60577 (18) 0.43110 (10) 0.90375 (9) 0.0339 (3)
H27 0.6622 0.4124 0.9481 0.041*
C28 0.56718 (16) 0.37349 (9) 0.84232 (8) 0.0256 (3)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0275 (6) 0.0278 (6) 0.0181 (5) −0.0007 (5) −0.0025 (5) −0.0013 (4)
N2 0.0284 (6) 0.0265 (6) 0.0194 (6) 0.0001 (5) −0.0019 (5) 0.0003 (4)
N3 0.0318 (7) 0.0279 (6) 0.0203 (6) 0.0001 (5) −0.0069 (5) 0.0008 (5)
N4 0.0279 (6) 0.0270 (6) 0.0203 (6) 0.0001 (5) −0.0022 (5) 0.0006 (5)
O1 0.0384 (7) 0.0707 (9) 0.0516 (7) −0.0127 (6) 0.0180 (6) −0.0126 (6)
O2 0.0320 (6) 0.0425 (6) 0.0496 (7) −0.0109 (5) 0.0057 (5) −0.0056 (5)
O3 0.0553 (7) 0.0301 (6) 0.0501 (7) −0.0003 (5) 0.0000 (6) −0.0116 (5)
O4 0.0605 (8) 0.0354 (6) 0.0348 (6) −0.0073 (5) −0.0099 (5) −0.0088 (5)
C1 0.0265 (7) 0.0248 (7) 0.0228 (7) 0.0036 (5) −0.0038 (6) 0.0024 (5)
C2 0.0298 (8) 0.0402 (9) 0.0288 (8) −0.0007 (6) −0.0008 (6) −0.0069 (6)
C3 0.0381 (9) 0.0535 (10) 0.0303 (8) −0.0005 (8) 0.0063 (7) −0.0128 (7)
C4 0.0285 (8) 0.0408 (9) 0.0335 (8) 0.0036 (6) 0.0077 (7) 0.0021 (7)
C5 0.0340 (8) 0.0338 (8) 0.0573 (11) −0.0026 (7) 0.0140 (8) 0.0051 (7)
C6 0.0269 (7) 0.0246 (7) 0.0353 (8) −0.0002 (6) −0.0024 (6) 0.0032 (6)
C7 0.0282 (7) 0.0255 (7) 0.0242 (7) 0.0020 (6) 0.0001 (6) 0.0003 (5)
C8 0.0260 (7) 0.0199 (6) 0.0194 (7) 0.0018 (5) −0.0033 (5) 0.0019 (5)
C9 0.0281 (7) 0.0229 (7) 0.0240 (7) 0.0031 (5) −0.0007 (6) 0.0049 (5)
C10 0.0403 (9) 0.0314 (8) 0.0233 (7) 0.0018 (6) 0.0029 (6) 0.0024 (6)
C11 0.0394 (9) 0.0394 (9) 0.0359 (9) 0.0033 (7) 0.0115 (7) 0.0090 (7)
C12 0.0283 (8) 0.0397 (9) 0.0446 (9) −0.0017 (7) 0.0041 (7) 0.0129 (7)
C13 0.0288 (8) 0.0306 (8) 0.0326 (8) −0.0028 (6) −0.0041 (6) 0.0058 (6)
C14 0.0270 (7) 0.0220 (7) 0.0235 (7) 0.0020 (5) −0.0012 (6) 0.0050 (5)
C15 0.0227 (7) 0.0277 (7) 0.0216 (7) −0.0025 (5) 0.0041 (5) 0.0006 (5)
C16 0.0279 (7) 0.0321 (8) 0.0300 (8) 0.0015 (6) −0.0016 (6) −0.0029 (6)
C17 0.0366 (8) 0.0306 (8) 0.0421 (9) 0.0084 (6) −0.0011 (7) −0.0016 (7)
C18 0.0375 (8) 0.0276 (8) 0.0342 (8) −0.0019 (6) 0.0079 (7) −0.0050 (6)
C19 0.0595 (11) 0.0351 (9) 0.0415 (10) −0.0096 (8) −0.0008 (8) −0.0115 (7)
C20 0.0344 (8) 0.0337 (8) 0.0232 (7) −0.0068 (6) 0.0011 (6) −0.0035 (6)
C21 0.0349 (8) 0.0283 (7) 0.0246 (7) −0.0012 (6) −0.0022 (6) 0.0020 (6)
C22 0.0222 (7) 0.0271 (7) 0.0188 (7) −0.0010 (5) 0.0018 (5) 0.0019 (5)
C23 0.0302 (8) 0.0277 (7) 0.0236 (7) −0.0012 (6) −0.0009 (6) 0.0009 (6)
C24 0.0443 (9) 0.0301 (8) 0.0362 (9) 0.0030 (7) −0.0072 (7) 0.0037 (6)
C25 0.0521 (10) 0.0268 (8) 0.0456 (10) 0.0031 (7) −0.0006 (8) −0.0020 (7)
C26 0.0526 (10) 0.0322 (8) 0.0337 (9) −0.0036 (7) 0.0001 (8) −0.0085 (6)
C27 0.0411 (9) 0.0364 (8) 0.0239 (7) −0.0030 (7) −0.0043 (6) −0.0027 (6)
C28 0.0282 (7) 0.0267 (7) 0.0218 (7) −0.0021 (6) 0.0009 (6) 0.0005 (5)

Geometric parameters (Å, º)

N1—C8 1.3599 (17) C9—C14 1.4025 (19)
N1—C14 1.3749 (17) C10—C11 1.375 (2)
N1—H1N 0.8600 C10—H10 0.9300
N2—C8 1.3256 (17) C11—C12 1.393 (2)
N2—C9 1.3902 (18) C11—H11 0.9300
N3—C22 1.3599 (17) C12—C13 1.376 (2)
N3—C23 1.3768 (18) C12—H12 0.9300
N3—H3N 0.8600 C13—C14 1.388 (2)
N4—C22 1.3261 (17) C13—H13 0.9300
N4—C28 1.3890 (18) C15—C16 1.389 (2)
O1—C4 1.3619 (18) C15—C21 1.4080 (19)
O1—C5 1.416 (2) C15—C22 1.4660 (19)
O2—C6 1.3709 (17) C16—C17 1.394 (2)
O2—C5 1.4335 (19) C16—H16 0.9300
O3—C18 1.3760 (18) C17—C18 1.366 (2)
O3—C19 1.434 (2) C17—H17 0.9300
O4—C20 1.3784 (17) C18—C20 1.375 (2)
O4—C19 1.427 (2) C19—H19A 0.9700
C1—C2 1.389 (2) C19—H19B 0.9700
C1—C7 1.4017 (19) C20—C21 1.366 (2)
C1—C8 1.4600 (19) C21—H21 0.9300
C2—C3 1.389 (2) C23—C24 1.392 (2)
C2—H2 0.9300 C23—C28 1.3981 (19)
C3—C4 1.361 (2) C24—C25 1.377 (2)
C3—H3 0.9300 C24—H24 0.9300
C4—C6 1.384 (2) C25—C26 1.398 (2)
C5—H5A 0.9700 C25—H25 0.9300
C5—H5B 0.9700 C26—C27 1.375 (2)
C6—C7 1.3652 (19) C26—H26 0.9300
C7—H7 0.9300 C27—C28 1.396 (2)
C9—C10 1.3926 (19) C27—H27 0.9300
C8—N1—C14 107.59 (11) C12—C13—C14 117.08 (14)
C8—N1—H1N 126.2 C12—C13—H13 121.5
C14—N1—H1N 126.2 C14—C13—H13 121.5
C8—N2—C9 105.23 (11) N1—C14—C13 132.81 (13)
C22—N3—C23 107.80 (11) N1—C14—C9 105.36 (12)
C22—N3—H3N 126.1 C13—C14—C9 121.83 (13)
C23—N3—H3N 126.1 C16—C15—C21 119.89 (13)
C22—N4—C28 105.45 (11) C16—C15—C22 119.74 (12)
C4—O1—C5 106.09 (12) C21—C15—C22 120.35 (12)
C6—O2—C5 105.20 (12) C15—C16—C17 121.91 (14)
C18—O3—C19 104.80 (12) C15—C16—H16 119.0
C20—O4—C19 104.78 (12) C17—C16—H16 119.0
C2—C1—C7 120.50 (13) C18—C17—C16 116.92 (14)
C2—C1—C8 120.70 (13) C18—C17—H17 121.5
C7—C1—C8 118.80 (12) C16—C17—H17 121.5
C3—C2—C1 121.48 (14) C17—C18—C20 121.65 (14)
C3—C2—H2 119.3 C17—C18—O3 128.39 (14)
C1—C2—H2 119.3 C20—C18—O3 109.91 (13)
C4—C3—C2 117.00 (14) O4—C19—O3 107.66 (12)
C4—C3—H3 121.5 O4—C19—H19A 110.2
C2—C3—H3 121.5 O3—C19—H19A 110.2
C3—C4—O1 127.87 (14) O4—C19—H19B 110.2
C3—C4—C6 122.23 (14) O3—C19—H19B 110.2
O1—C4—C6 109.90 (14) H19A—C19—H19B 108.5
O1—C5—O2 108.56 (12) C21—C20—C18 122.58 (14)
O1—C5—H5A 110.0 C21—C20—O4 127.65 (14)
O2—C5—H5A 110.0 C18—C20—O4 109.76 (13)
O1—C5—H5B 110.0 C20—C21—C15 116.98 (13)
O2—C5—H5B 110.0 C20—C21—H21 121.5
H5A—C5—H5B 108.4 C15—C21—H21 121.5
C7—C6—O2 128.50 (13) N4—C22—N3 111.92 (12)
C7—C6—C4 121.62 (13) N4—C22—C15 124.77 (12)
O2—C6—C4 109.87 (13) N3—C22—C15 123.32 (12)
C6—C7—C1 117.17 (13) N3—C23—C24 132.47 (13)
C6—C7—H7 121.4 N3—C23—C28 105.24 (12)
C1—C7—H7 121.4 C24—C23—C28 122.30 (13)
N2—C8—N1 112.32 (12) C25—C24—C23 116.66 (14)
N2—C8—C1 124.57 (12) C25—C24—H24 121.7
N1—C8—C1 123.11 (11) C23—C24—H24 121.7
N2—C9—C10 130.30 (13) C24—C25—C26 121.64 (15)
N2—C9—C14 109.49 (12) C24—C25—H25 119.2
C10—C9—C14 120.21 (13) C26—C25—H25 119.2
C11—C10—C9 117.62 (14) C27—C26—C25 121.64 (14)
C11—C10—H10 121.2 C27—C26—H26 119.2
C9—C10—H10 121.2 C25—C26—H26 119.2
C10—C11—C12 121.76 (14) C26—C27—C28 117.67 (14)
C10—C11—H11 119.1 C26—C27—H27 121.2
C12—C11—H11 119.1 C28—C27—H27 121.2
C13—C12—C11 121.50 (14) N4—C28—C27 130.30 (13)
C13—C12—H12 119.3 N4—C28—C23 109.59 (12)
C11—C12—H12 119.3 C27—C28—C23 120.09 (13)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N1—H1N···N4i 0.86 1.93 2.7761 (15) 168
N3—H3N···N2 0.86 1.96 2.8053 (16) 168

Symmetry code: (i) x−1/2, −y+1/2, z−1/2.

Footnotes

Supporting information for this paper is available from the IUCr electronic archives (Reference: XU5756).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814000737/xu5756sup1.cif

e-70-0o157-sup1.cif (21.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814000737/xu5756Isup2.hkl

e-70-0o157-Isup2.hkl (192.2KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814000737/xu5756Isup3.cml

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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