Table 1. DNA Binding and 5mC Excision Activities for DMEΔNΔIDR1 Point Mutantsa.
Kd (μM) | relative affinity | kst (×10–5 s–1) | relative to WT | |
---|---|---|---|---|
WT | 8.3 ± 1.2 | 1.0 | 18.1 ± 1.2 | 1.0 |
Q777A | 8.1 ± 1.1 | 1.0 | 7.6 ± 0.4 | 0.4 |
N778A | 18.9 ± 3.4 | 0.4 | 2.7 ± 0.6 | 0.1 |
M1238A | 8.5 ± 1.0 | 1.0 | 0.02 ± 0.01 | 0.001 |
K1286Q | 8.2 ± 1.8 | 1.0 | <0.01b | 0.0005 |
D1304N | 0.6 ± 0.1 | 14 | <0.01b | 0.0005 |
Dissociation constants (Kd) and single-turnover rate constants for 5mC (kst) excision were measured at 25 °C, pH 8.5, and 170 mM ionic strength using a 25mer DNA duplex containing 5mC and end-labeled with fluorescein. Enzyme concentration was saturating (10 μM) in activity assays. Values are reported as averages ± SD from at least three experiments. Relative binding affinities calculated as (Kd WT)/(Kd Mutant); Relative to WT rates calculated as (kst Mutant)/(kst WT).
Activity is below limit of detection.