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. Author manuscript; available in PMC: 2014 May 1.
Published in final edited form as: Arch Neurol. 2012 Dec;69(12):1583–1590. doi: 10.1001/archneurol.2012.2016

Investigation of C9orf72 in 4 Neurodegenerative Disorders

Zhengrui Xi 1, Lorne Zinman 1, Yakov Grinberg 1, Danielle Moreno 1, Christine Sato 1, Juan M Bilbao 1, Mahdi Ghani 1, Isabel Hernández 1, Agustín Ruiz 1, Mercè Boada 1, Francisco J Morón 1, Anthony E Lang 1, Connie Marras 1, Amalia Bruni 1, Rosanna Colao 1, Raffaele G Maletta 1, Gianfranco Puccio 1, Innocenzo Rainero 1, Lorenzo Pinessi 1, Daniela Galimberti 1, Karen E Morrison 1, Catriona Moorby 1, Joanne D Stockton 1, Mario Masellis 1, Sandra E Black 1, Lili-Naz Hazrati 1, Yan Liang 1, Jan van Haersma de With 1, Luis Fornazzari 1, Roque Villagra 1, Ricardo Rojas-Garcia 1, Jordi Clarimón 1, Richard Mayeux 1, Janice Robertson 1, Peter St George-Hyslop 1, Ekaterina Rogaeva 1
PMCID: PMC4005900  NIHMSID: NIHMS571392  PMID: 22964832

Abstract

Objective

To estimate the allele frequency of C9orf72 (G4C2) repeats in amyotrophic lateral sclerosis (ALS), frontotemporal lobar degeneration (FTLD), Alzheimer disease (AD), and Parkinson disease (PD).

Design

The number of repeats was estimated by a 2-step genotyping strategy. For expansion carriers, we sequenced the repeat flanking regions and obtained APOE genotypes and MAPT H1/H2 haplotypes.

Setting

Hospitals specializing in neurodegenerative disorders.

Subjects

We analyzed 520 patients with FTLD, 389 patients with ALS, 424 patients with AD, 289 patients with PD, 602 controls, 18 families, and 29 patients with PD with the LRRK2 G2019S mutation.

Main Outcome Measure

The expansion frequency.

Results

Based on a prior cutoff (>30 repeats), the expansion was detected in 9.3% of patients with ALS, 5.2% of patients with FTLD, and 0.7% of patients with PD but not in controls or patients with AD. It was significantly associated with family history of ALS or FTLD and age at onset of FTLD. Phenotype variation (ALS vs FTLD) was not associated with MAPT, APOE, or variability in the repeat flanking regions. Two patients with PD were carriers of 39 and 32 repeats with questionable pathological significance, since the 39-repeat allele does not segregate with PD. No expansion or intermediate alleles (20–29 repeats) were found among the G2019S carriers and AD cases with TAR DNA-binding protein 43–positive inclusions. Surprisingly, the frequency of the 10-repeat allele was marginally increased in all 4 neurodegenerative diseases compared with controls, indicating the presence of an unknown risk variation in the C9orf72 locus.

Conclusions

The C9orf72 expansion is a common cause of ALS and FTLD, but not of AD or PD. Our study raises concern about a reliable cutoff for the pathological repeat number, which is important in the utility of genetic screening.


Amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD) are fatal neurodegenerative syndromes that belong to the same clinicopathological spectrum.1,2 Frontotemporal lobar degeneration is a primary dementia characterized by early behavioral, language, and extrapyramidal changes, while symptoms of ALS are the result of the degeneration of motor neurons. Both syndromes may occur within the same family or even the same patient.

Previously, linkage analyses revealed a 3.7-Mb region on 9p21 associated with familial ALS/FTLD,310 and genome-wide association studies suggested a major risk factor in the same locus for sporadic ALS and FTLD.1115 Recently, 2 research groups independently explained this locus by a pathological noncoding hexanucleotide (G4C2)30–1600 repeat expansion in the chromosome 9 open reading frame 72 (C9orf72) gene of unknown function.16,17 Based on the allele frequencies in cases vs controls, the first studies suggested that expansions with more than 30 repeats should be considered pathological, while alleles with less than 20 repeats are wild type.16 However, a reliable cutoff for the pathological alleles remains to be established by additional studies (eg, segregation, neuropathological, or functional studies). Furthermore, the contribution of intermediate-size alleles (20–29 repeats) to disease pathology has not yet been evaluated.

The expansion is the most frequent cause of ALS and FTLD identified to date. In the Finnish population, 46% of patients with familial ALS, 21% of patients with sporadic ALS, and 29% of patients with sporadic FTLD have the expansion.16 DeJesus-Hernandez et al17 reported the expansion in 24% of patients with familial ALS, 4% of patients with sporadic ALS, and 12% of patients with familial FTLD. In the Flanders-Belgian cohort, the mutation was observed in 47% of patients with familial ALS, 5% of patients with sporadic ALS, and 16% of patients with familial FTLD.18 The pathological mechanism associated with the expansion is currently unknown except that the expansion leads to a 50% reduction of C9orf72 messenger RNA expression,17,18 and the brain pathology in mutation carriers is associated with possibly toxic nuclear RNA foci, as well as TAR DNA-binding protein 43 (TDP-43) and p62 inclusions.17,19 The clinical phenotype appears to be highly heterogeneous in reported mutation carriers.20

Following the discovery of this novel mutation, many questions are yet to be addressed. What is the expansion frequency in other ALS/FTLD cohorts? Are there any clinical features that can discriminate between patients with and without the C9orf72 expansion? What is a reliable cutoff for the pathological repeat number? What is the role of alleles with intermediate repeat sizes or variability in the region flanking the G4C2 repeat? Could the expansion account for other neurodegenerative diseases, such as Alzheimer disease (AD) or Parkinson disease (PD)? These questions were investigated by the current study. The expansion frequency was estimated in a comprehensive case-control sample set consisting of 2224 individuals (patients with FTLD, ALS, AD, and PD and healthy controls). To our knowledge, this is the first case-control study using a 2-step genotyping strategy that allowed for the analysis of genotype information for the alleles with less than 50 repeats. Clinical data were analyzed to understand the phenotype spectrum observed in mutation carriers.

METHODS

HUMAN SAMPLES

Informed consent was obtained from all participants in accordance with the respective ethical review boards. Sample characteristics are presented in Table 1. All study participants were either European (from Italy, Spain, and the United Kingdom) or North American (white individuals mainly of North European origin) recruited from hospitals specializing in neurodegenerative disorders. The investigated unrelated individuals included 520 patients with FTLD, 389 patients with ALS, 424 patients with AD, and 289 patients with PD and 602 neurologically healthy controls (>65 years). Patients were diagnosed using established clinical criteria.2124 Cases with known pathological mutations were excluded from the study. However, a previously described data set of 29 Canadian patients with PD carrying the common LRRK2 G2019S mutation25 was analyzed separately for the presence of an expansion or intermediate allele in C9orf72 as a potential modifier of age at onset of parkinsonism. In addition, all available family members of 18 extended pedigrees were genotyped for the G4C2 repeats (6 FTLD, 9 ALS, 1 PD, and 2 AD families).

Table 1.

Sample Characteristics, Including Expansion Carriers Identified in Each Cohort

Cohort All Samples, No. (%) No. of Expansion Carriersa Frequency of Expansion, %
ALS
 Age at onset, y, mean (SD) 57.6 (12.3)
 Female 149 (38.3)
 Total 389 36 9.3
 Familial 47 18 38.3
FTLD
 Age at onset, y, mean (SD) 65.4 (10.1)
 Female 258 (49.6)
 Total 520 27 5.2
 Familial 211 22 10.4
AD
 Age at onset, y, mean (SD) 72.1 (9.4)
 Female 264 (62.3)
 Total 424
 Familial 167
PD
 Age at onset, y, mean (SD) 52.6 (13.0)
 Female 92 (31.8)
 Total 289 2 0.7
 Familial 116 1 0.9
Controls
 Age, y, mean (SD) 70.2 (9.5)
 Female 357 (59.3)
 Total 602

Abbreviations: AD, Alzheimer disease; ALS, amyotrophic lateral sclerosis; ellipses, not detected/not applicable; FTLD, frontotemporal lobar degeneration; PD, Parkinson disease

a

The allele was counted as an expansion allele when the number of repeats was more than 30.

GENOTYPING ASSAYS

Genomic DNA was isolated from blood using a QIAGEN kit. To detect the size of the C9orf72 alleles within the normal to intermediate range of G4C2 repeats (detection limit is 50 repeats) and the presence of large expansions, a 2-step genotyping strategy was used as previously described17 (eFigure 1, http://www.joygrafika.com/projects/University_of_Toronto). Briefly, in the first step, DNA samples (10 ng/polymerase chain reaction [PCR]) were amplified using primers near the repeat region (5′-FAM-caaggagggaaacaaccgcagcc and 5′-gcaggcaccgcaaccgcag). The fragment-length analysis was performed on an ABI PRISM 3100 DNA analyzer and visualized by Genotyper software version 2.5 (Applied Biosystems). Since expanded alleles are not amplifiable with this set of primers, expansion carriers appear to be homozygous for a normal repeat allele (in addition to true homozygotes). The number of repeats was calculated based on the fragment size (eg, 129 base pairs [bp] represents 2 repeats, which was confirmed by sequencing 7 samples [PCR primers: 5′-cgtcatcgcacatagaaaaca and 5′-ggagacagctcgggtactga]). Since published sequencing analysis demonstrated that the G4C2 repeats are uninterrupted,17 the number of repeats for each allele was calculated using the following formula: (amplicon length – 117)/6. Samples scored as homozygous were included in the second step to detect large expansions (>50 repeats) by a repeat-primed PCR. DNA samples (100 ng/PCR) were amplified as described previously using 3 primers (MRX-F: FAM-tgtaaaacgacggccagtcaaggagggaaacaaccgcagcc, MRX-M13R: caggaaacagctatgacc, and MRX-R1: caggaaacagctatgaccgggcccgccccgaccacgccccggccccggccccgg),17 except the primer ratio was modified to increase PCR efficiency (MRX-F/MRX-M13R/MRX-R1 = 5/5/1). Data were analyzed using GeneScan software version 3.1 (Applied Biosystems).

To search for sequence variability in regions flanking the G4C2 repeat, 2 PCR products were sequenced in 50 patients (44 expansion carriers and 6 noncarriers) (eFigure 1B). The 5′ flanking region was amplified with primers 5′-ccctaccagggtttgcagt and 5′-cgactcctgagttccagagc (616 bp). The 3′ flanking region was amplified with primers 5′-tgcggttgcggtgcctgc and 5′-gaatggggagcacaccgacttgc (625 bp). The APOE polymorphism defining the ε2 to ε4 alleles and the 238-bp insertion/deletion in intron 9 of MAPT defining the H1/H2 haplotypes was genotyped as described previously in all patients with FTLD and ALS with a pathological expansion in C9orf72, as well as in their family members.26

STATISTICAL ANALYSES

Differences in sample characteristics (eg, sex, age at onset, and familial history between cases and controls) were analyzed using the χ2 test, Fisher exact test, or independent-samples t test as appropriate. Allele frequencies within the normal to intermediate range of repeats were calculated after excluding patients who carry the pathological expanded allele, defined as a repeat number more than 30 as previously suggested.16

The association between disease and alleles with less than 30 repeats was assessed using CLUMP software that is based on Monte Carlo tests for the evaluation of highly polymorphic loci.27 Empirical P values for T1 through T4 analyses were obtained after 2000 simulations. Further analyses to obtain P values for each allele were also carried out as follows: allele counts from cases and controls were tested for significance using the χ2 test after combining rare alleles. When any cell in the contingency table had an expected value less than 5, the corresponding allele was pooled with the neighboring allele (this process was repeated until no cell had an expected value <5). Each allele group was compared in turn with the rest of the alleles pooled together to calculate the χ2 statistic. The pooling enabled the calculation of odds ratios and 95% CIs.28 All the statistical analyses were done using SPSS (version 20; IBM SPSS). Statistical significance was taken to be P < .05 (Bonferroni correction for multiple testing was applied).

RESULTS

We used a previously suggested cutoff (>30 repeats) to distinguish the pathogenic expansion from the normal allele.16 None of the patients in our series were homozygous for the expansion allele, since all samples were successfully amplified in the first step. Samples homozygous in the first step (33%) were evaluated for the large expansion (>50 repeats). Based on the electropherogram with sawtooth peaks (eFigure 1), 65 unrelated patients were identified to be expansion carriers: 9.3% of patients with ALS (36 of 389), 5.2% of patients with FTLD (27 of 520), and 0.7% of patients with PD (2 of 289), but no expansions were detected in 424 patients with AD and 602 controls (Table 1).

Details of the clinical data for expansion carriers vs noncarriers are presented in Table 2. In addition, 14 case reports on expansion carriers are available in the online-only material. The expansion allele was significantly associated with family history for both ALS and FTLD (P < .001). The frequency of the expansion was 10.5% in patients with familial FTLD and 38.3% in patients with familial ALS. The average age at onset of FTLD was 6 years younger in expansion carriers than those without (P = .003). The disease subcategory of FTLD with motor neuron disease was significantly enriched in expansion carriers (P < .001). However, there was no significant association with any evaluated clinical characteristic of ALS.

Table 2.

Comparison of the Clinical Statistics Between Expansion Carriers and Noncarriers

No. (%)
Cohort Noncarriers Expansion Carriers P Valuea ORb (95% CI)
ALS Cases
No. of ALS cases 353 36
Age at onset, y, mean (SD) 57.6 (12.6) 57.8 (9.1) .92
Female 134 (38.0) 15 (41.7) .68
Familial cases 29 (8.2) 18 (50.0) 2.31 × 10−9 11.2 (5.2–23.8)
Cases with FTLD 41 (11.6) 4 (11.1) .93
Site of onset
 Limb 235 (66.6) 24 (66.7) .99
 Bulbar 93 (26.3) 10 (28.7) .85
 Mixed 7 (2.0)
 Unknown 18 (5.1) 2 (5.6)

FTLD Cases
No. of FTLD cases 493 27
Age at onset, y, mean (SD) 65.7 (10.1) 59.6 (7.6) .003
Female 248 (50.5) 10 (37.0) .17
Familial cases 188 (38.1) 22 (81.5) 7.8 × 10−6 7.1 (2.7–19.2)
Diagnosis subcategory
 bvFTD 218 (44.2) 11 (40.7) .72
 FTLD unspecified 131 (26.6) 8 (29.6) .73
 SD 60 (12.2)
 PNFA 59 (12.0)
 FTLD-MND 20 (4.1) 8 (29.6) 2.8 × 10−5 10.0c (3.9–25.5)
 Other 5 (1.0)

Abbreviations: ALS, amyotrophic lateral sclerosis; bvFTD, behavioral variant of frontotemporal dementia; ellipses, not detected/not applicable; FTLD, frontotemporal lobar degeneration; FTLD-MND, frontotemporal lobar degeneration with motor neuron disease; OR, odds ratio; PNFA, progressive nonfluent aphasia; SD, semantic dementia.

a

A t test was used to compare the continuous variables. Categorical variables were compared by Pearson χ2 test or Fisher exact test (when expected value <5).

b

The OR was calculated only for variables showing P < .05.

c

The OR was obtained by comparing FTLD-MND with the rest of the subcategories.

In expansion carriers, we did not observe an intermediate or pathological number of repeats for the second allele (2–11 repeats). Also, sequencing analysis of 44 expansion carriers and 6 noncarriers did not reveal variability in the regions immediately flanking the G4C2 repeat that could be responsible for repeat instability, including a short tandem repeat (CGG)8 located 294 bp downstream of the G4C2 repeat (eFigure 1B). Hence, it is unlikely that the number of repeats of the second allele or polymorphisms in the flanking region contribute significantly to the disease phenotype. In addition, the MAPT H1/H2 and APOE genotypes were examined in 63 expansion carriers (36 patients with ALS and 27 patients with FTLD) and their family members, since both genes are well-known risk factors for several neurodegenerative disorders including FTLD. However, statistical analysis did not reveal a significant link between these genes and disease presentation (ALS vs FTLD) (eTable 1 and eFigure 2).

For the segregation analysis, we genotyped all available family members of probands with the expansion (6 FTLD and 9 ALS families) and detected 30 additional mutation carriers. The expansion allele showed perfect cosegregation with disease, and for those expansion carriers who were asymptomatic (mean [SD] age, 46.3 [10.7] years; range, 24–64 years), follow-up is ongoing (Table 3, Figure 1A, and eFigure 2A and B). Within the pedigrees, there was no evidence of instability in the repeat size for the normal alleles (Figure 1A and eFigure 2). The method used in the study did not allow the same question to be addressed for the expanded allele, and the DNA quality/quantity was not sufficient to conduct Southern blotting to estimate the size of the expanded allele. However, in the 2 families with expansion carriers in 2 generations, a younger age at onset in the subsequent generation was observed (48 vs 74 years in ALS15 pedigree and 45–47 years vs 60s in the FTLD TOR73 pedigree), indicating genetic anticipation (eFigure 2A).

Table 3.

Expansion Carriers Identified in the ALS and FTLD Pedigrees

Sample Size
Status All Expansion Carriers Noncarriers
6 FTLD pedigrees 48 20 28
 FTLD 8 8
 FTLD-MND 1 1
 bvFTD 2 2
 Relatives 30 9 21
 Spouses 7 7
9 ALS pedigrees 34 25 9
 ALS 7 7
 ALS-FTLD 2 2
 FTLD 1 1
 Relatives 24 15 9

Abbreviations: ALS, amyotrophic lateral sclerosis; bvFTD, behavioral variant of frontotemporal dementia; ellipses, not detected; FTLD, frontotemporal lobar degeneration; FTLD-MND, frontotemporal lobar degeneration with motor neuron disease.

Figure 1.

Figure 1

Families with the G4C2 repeat expansion. A, Frontotemporal lobar degeneration (FTLD) pedigree. B, Parkinson disease (PD) pedigree. Individual genotypes are shown beneath the corresponding diamond, including “at-risk” currently asymptomatic individuals. Arabic numbers indicate the repeat units (exp indicates expansion). The age at the time of examination is shown in the upper right corner. Age at onset is indicated for patients below the ID number. Sex of the family members is masked to protect privacy.

Two patients with PD (without signs of ALS or dementia) were categorized as expansion carriers (39 and 32 repeats). Family history of PD was known only for 1 patient; however, the 39-repeat allele does not segregate with PD, since the affected sibling did not inherit it (Figure 1B). The role of intermediate alleles (20–29 repeats) in neurodegenerative diseases is currently unknown. The clinical characteristics of the patients with PD with the expansion and intermediate alleles are presented in eTable 2. Intermediate alleles were observed only in 4 PD cases, 2 of which had parkinsonism followed by severe dementia. We also assessed if the presence of intermediate alleles could influence the age at onset of parkinsonism in LRRK2 G2019S mutation carriers (onset between age 40–80 years). However, none of the 29 LRRK2 mutation carriers had an expanded or intermediate repeat allele (<11 repeats).

Furthermore, our results do not suggest that the intermediate C9orf72 alleles significantly contribute to AD risk, since the frequency of such alleles was similar between patients with AD and controls (about 1%), and the alleles with 23 and 21 repeats did not segregate with AD in 2 families (eFigure 2C). Importantly, 15 of the 31 autopsied AD cases had TDP-43 inclusions (a frequent co-pathology in AD); however, no intermediate allele carriers were found among these cases. This is of note because ALS/FTLD caused by the expansion is associated with TDP-43 brain pathology.17,20,29,30 Hence, the TDP-43 pathology in AD could not be explained by an increased number of repeats in C9orf72.

Finally, a case-control association analysis was carried out using Monte Carlo tests. All carriers of alleles with more than 30 repeats were excluded from this analysis to avoid association due to the pathological expansion. Analyses T1 and T2 revealed association between normal repeat alleles (<30) with FTLD and ALS (eTable 4). Analysis T3 showed that the 10-repeat allele was significantly associated with FTLD. To get statistics for each allele (eg, P value or odds ratio), we assessed the distribution of normal alleles in 4 disease groups vs controls (Figure 2 and eTable 3). In each group, the most frequent were the 2-, 5-, and 8-repeat alleles, which account for about 75% of all observed alleles. A marginal protective effect of the 5-repeat allele was detected in FTLD, ALS, and PD, as well as of the 11-repeat allele in ALS and AD (nominal P < .05). The frequency of the 10-repeat allele was marginally increased in all 4 neurodegenerative diseases vs the control group (nominal P < .05). The risk associated with this allele remained significant in the FTLD data set even after Bonferroni correction (P = .03; odds ratio, 2.14) (eTable 3).

Figure 2.

Figure 2

Comparison of the allele frequencies (repeats <30) between controls and cases in each disease cohort (AD indicates Alzheimer disease; ALS, amyotrophic lateral sclerosis; FTLD, frontotemporal lobar degeneration; and PD, Parkinson disease). Asterisks indicate a significant P value (nominal P < .05). In comparison with controls, there were 2 significant differences observed for the allele frequencies for the patients with FTLD, 4 for the patients with ALS, 2 for the patients with AD, and 2 for the patients with PD. A similar pattern was observed for all 4 diseases. The 5-repeat allele was significantly lower in FTLD, ALS, and PD than in controls and the 10-repeat allele in disease was significantly higher in all 4 disease groups than in controls. Expansion carriers were excluded from this analysis: controls, n = 602; FTLD, n = 488; ALS, n = 353; AD, n = 424; and PD, n = 287.

COMMENT

Our findings further support the expansion in C9orf72 as a common cause of ALS and FTLD, but not AD or PD. In contrast to the 1-step genotyping used in published case-control studies of C9orf72, 2-step genotyping allowed us to obtain the exact genotype for each individual (except >50 repeats). No homozygous expansion carriers were found in the current study, suggesting that such a genotype could be lethal. A heterozygous expansion (>30 repeats) was detected in 9.3% of patients with ALS and 5.2% of patients with FTLD and was significantly more frequent in cases with a family history of ALS or FTLD. The frequency was doubled in our familial FTLD cases (10.4%), which is similar to that reported by DeJesus-Hernandez et al17 (11.7%).

We did not detect significant association between the presence of the expansion and clinical characteristics of patients with ALS, while in the FTLD series, the expansion was associated with a younger age at onset and the FTLD with motor neuron disease phenotype. These findings are in line with previous observations.18,31 Notably, none of our FTLD cases with the expansion were diagnosed with primary progressive aphasia, which is similar to the Mayo clinic cohort32 and different from the Manchester cohort wherein 4 primary progressive aphasia cases had the expansion.31 Wide clinical variability in expansion carriers has been previously described (eg, age at onset and disease duration),20,33 and future characterization of such data in a large cohort of carriers could generate a clinically useful algorithm to prioritize patients for mutation analysis of C9orf72.34

In our study, a variable phenotype in expansion carriers (ALS vs FTLD) was not associated with the APOE alleles or the extended MAPT H1/H2 haplotypes. However, only an evaluation of a large data set could reach a solid conclusion about APOE and MAPT as phenotype modifiers. It is also possible that C9orf72 itself is responsible for the modifying effect because of coding sequence variations, repeat size, and/or repeat instability. We demonstrated that the repeat size of the second allele in expansion carriers was within the normal range (2–11 repeats) and unlikely to contribute to the variability in disease phenotype. In addition, our sequencing analysis did not reveal variations in regions flanking the G4C2 repeat that could be responsible for repeat instability or the variable phenotype of expansion carriers. Future studies should assess intronic and coding variations in the entire C9orf72 locus as potential phenotype modifiers.

Instability of the G4C2 repeat region was suggested to be a possible mechanism for the occurrence of the expansion.16 However, a founder effect is more likely to be responsible for the incidence of the mutation, since most carriers harbor a common haplotype.17,29 Despite the method's limitation (the size of large expansions could not be determined), we estimated the stability of 2 to 30 repeats in the pedigrees. The number of repeats was stable across generations.

Given the clinical/pathological overlap between neurodegenerative diseases,3538 our study determined whether the expansion plays a role in AD or PD. Importantly, the PD samples were previously collected to generate a data set enriched in genetic predisposition to PD and mainly consisted of cases with either an early age at onset (mean [SD], 52.6 [13.04] years) and/or family history of PD (40%).39 However, the frequency of expansion alleles in our PD data set was unremarkable (0.7%). Only 2 patients (without symptoms of ALS or dementia) were carriers of 32 and 39 repeats, which is much smaller than the expansion estimated by Southern blot (700–1600 repeats),17 and segregation analysis did not support the pathogenic nature of the 39–repeat allele. This raises concern about a reliable cutoff for a pathological repeat number, which is important in the utility of genetic screening in patient care. Likely, a higher cutoff or establishing a gray zone will be proposed in the future based on an increasing number of observations from case-control and neuropathological studies.40,41 Among our ALS and FTLD mutation carriers, only 2 had an allele with questionable pathological significance (<40 repeats). The connection between the repeat number and pathological significance has to be carefully investigated. It is possible that the pathological cutoff is disease dependent (eg, ALS vs FTLD) and could be modulated by individual genetic background. Furthermore, future studies have to test the possibility of somatic instability of the repeat region (the disease-related tissues, such as the spinal cord, could have larger expansions than blood cells from the same individual).

Our results did not suggest that the expansion or intermediate alleles are associated with AD. In contrast, there was a report of 6 expansion carriers in a familial AD cohort (<1%), 4 of whom were from the same family.42 However, autopsy indicated that 3 carriers actually had amnestic FTLD. Whether the remaining carriers were also clinically misdiagnosed as having AD remains to be seen. In addition to typical AD pathology, 15 of our patients with AD had TDP-43 inclusions, which are known to be associated with the brain pathology of the expansion17,20,29,30; however, all of these patients with AD have genotypes within the normal range (2–12 repeats).

Our case-control studies also assessed the frequency of alleles within the normal range (<30 repeats) and observed a trend toward an association between the 10-repeat allele and risk for all 4 disorders (odds ratio, 1.72–2.14). It is tempting to speculate that this allele is in linkage disequilibrium with an unknown C9orf72 risk variation. Further genetic work has to validate this observation, including follow-up case-control studies and sequencing of 10-repeat carriers.

Supplementary Material

Supplementary data

Acknowledgments

Financial Disclosure: Dr Masellis has received speaker honoraria from Novartis and EMD Serono Inc; serves as an associate editor for Current Pharmacogenomics and Personalized Medicine; receives publishing royalties from Henry Stewart Talks; has served as a consultant for BioScape Medical Imaging CRO; and receives research support from the Canadian Institutes of Health Research, Parkinson Society Canada, an Early Researcher Award from the Ministry of Economic Development and Innovation of Ontario, Teva Pharmaceutical Industries Ltd, and the Department of Medicine, Sunnybrook Health Sciences Centre.

Funding/Support: This work was supported by grants from the Ontario Research Fund, the Weston Foundation (Drs Rogaeva and St George-Hyslop), the Howard Hughes Medical Institute, The Wellcome Trust and Medical Research Council, the Alzheimer Society of Ontario (Dr St George-Hyslop), the Canadian Institutes of Health Research (Drs St George-Hyslop, Rogaeva and Black), a Center of Excellence grant from the National Parkinson Foundation (Drs Marras and Lang), and the James Hunter Family ALS Initiative (Drs Robertson and Zinman).

Footnotes

Author Contributions: Study concept and design: Xi, St George-Hyslop, and Rogaeva. Acquisition of data: Xi, Zinman, Grinberg, Moreno, Sato, Bilbao, Ghani, Hernández, Ruiz, Boada, Morón, Lang, Marras, Bruni, Colao, Maletta, Puccio, Rainero, Pinessi, Galimberti, Morrison, Moorby, Stockton, Masellis, Black, Hazrati, Liang, van Haersma de With, Fornazzari, Villagra, Rojas-Garcia, Clarimón, Mayeux, Robertson, and Rogaeva. Analysis and interpretation of data: Xi, Grinberg, Marras, Masellis, and Rogaeva. Drafting of the manuscript: Xi and Rogaeva. Critical revision of the manuscript for important intellectual content: Xi, Zinman, Grinberg, Moreno, Sato, Bilbao, Ghani, Hernández, Ruiz, Boada, Morón, Lang, Marras, Bruni, Colao, Maletta, Puccio, Rainero, Pinessi, Galimberti, Morrison, Moorby, Stockton, Masellis, Black, Hazrati, Liang, van Haersma de With, Fornazzari, Villagra, Rojas-Garcia, Clarimón, Mayeux, Robertson, and St George-Hyslop. Statistical analysis: Xi. Obtained funding: Zinman, Grinberg, Bilbao, van Haersma de With, Mayeux, Robertson, St George-Hyslop, and Rogaeva. Administrative, technical, and material support: Xi, Zinman, Moreno, Sato, Ghani, Hernández, Ruiz, Boada, Morón, Bruni, Colao, Maletta, Puccio, Rainero, Pinessi, Galimberti, Morrison, Moorby, Stockton, Black, Hazrati, Liang, Fornazzari, Rojas-Garcia, Clarimón, and Rogaeva. Study supervision: Morrison, St George-Hyslop, and Rogaeva.

Online-Only Material: The eTables, eFigures, and case reports are available at http://www.joygrafika.com/projects/University_of_Toronto.

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