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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2014 Apr 26;70(Pt 5):o596–o597. doi: 10.1107/S1600536814008976

3-Bromo-2-[4-(methyl­sulfan­yl)phen­yl]-5,6,7,8-tetra­hydro-1,3-benzo­thia­zolo[3,2-a]imidazole

Alexander S Bunev a,*, Elena V Sukhonosova b, Vladimir E Statsyuk a, Gennady I Ostapenko a, Victor N Khrustalev c
PMCID: PMC4011264  PMID: 24860393

Abstract

In the title mol­ecule, C16H15BrN2S2, the central imidazo[2,1-b]thia­zole fragment is almost planar (r.m.s. deviation = 0.012 Å), and the fused 5,6,7,8-tetra­hydro­benzene ring adopts an unsymmetrical half-chair conformation. The dihedral angle between the imidazo[2,1-b]thia­zole and benzene planes is 18.25 (4)°. The terminal methyl­sulfanyl substituent lies practically within the benzene plane [the dihedral angle between the corresponding planes is 7.20 (10)°] and is turned toward the C—Br bond. In the crystal, mol­ecules form infinite chains along [100] via secondary Br⋯N inter­actions [3.1861 (16) Å]. The chains are arranged at van der Waals distances.

Related literature  

For applications of imidazo[2,1-b][1,3]benzo­thia­zoles, see: Ager et al. (1988); Sanfilippo et al. (1988); Barchéchath et al. (2005); Andreani et al. (2008); Chao et al. (2009); Kumbhare et al. (2011); Chandak et al. (2013). For the crystal structures of related compounds, see: Landreau et al. (2002); Adib et al. (2008); Fun, Asik et al. (2011); Fun, Hemamalini et al. (2011); Ghabbour et al. (2012); Bunev et al. (2013, 2014).graphic file with name e-70-0o596-scheme1.jpg

Experimental  

Crystal data  

  • C16H15BrN2S2

  • M r = 379.34

  • Triclinic, Inline graphic

  • a = 7.3132 (3) Å

  • b = 7.5663 (3) Å

  • c = 14.4543 (7) Å

  • α = 95.033 (1)°

  • β = 97.188 (1)°

  • γ = 101.938 (1)°

  • V = 771.03 (6) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 2.93 mm−1

  • T = 120 K

  • 0.15 × 0.10 × 0.10 mm

Data collection  

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2003) T min = 0.668, T max = 0.758

  • 10352 measured reflections

  • 4508 independent reflections

  • 3927 reflections with I > 2σ(I)

  • R int = 0.025

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.030

  • wR(F 2) = 0.073

  • S = 1.05

  • 4508 reflections

  • 191 parameters

  • H-atom parameters constrained

  • Δρmax = 0.67 e Å−3

  • Δρmin = −0.32 e Å−3

Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814008976/rk2426sup1.cif

e-70-0o596-sup1.cif (24.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814008976/rk2426Isup2.hkl

e-70-0o596-Isup2.hkl (220.8KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814008976/rk2426Isup3.cml

CCDC reference: 998505

Additional supporting information: crystallographic information; 3D view; checkCIF report

Acknowledgments

The authors are grateful to the Ministry of Education and Science of the Russian Federation (State program No. 426).

supplementary crystallographic information

1. Comment

Imidazo[2,1–b][1,3]benzothiazole are of great interest due to their biological properties. These compounds and their derivatives demonstrate the antitumor (Andreani et al., 2008), antiallergic (Ager et al., 1988), anesthetic (Sanfilippo et al., 1988) and anti–cancer (Kumbhare et al., 2011) activities as well as the inhibition activity of apoptosis in testiculargerm cells (Chandak et al., 2013), lymphocytes (Barchéchath et al., 2005), and FMS–like tyrosine kinase–3 (FLT3) (Chao et al., 2009).

In this work, a new halogensubstituted 5,6,7,8–tetrahydrobenzo[d]imidazo[2,1–b]thiazole, C16H15BrN2S2, I, was prepared by the reaction of 5,6,7,8–tetrahydrobenzo[d]imidazo[2,1–b]thiazole with bromine at room temperature (Fig. 1), and its structure was unambiguously established by the X–ray diffraction study (Fig. 2).

In the title molecule (I) the central imidazo[2,1–b]thiazole fragment is almost planar (r.m.s. deviation = 0.012 Å), and the fused 5,6,7,8-tetrahydrobenzene ring adopts an unsymmetrical half–chair conformation (the C6 and C7 carbon atoms are out of the plane passed through the other atoms of the ring by -0.246 (2) and 0.508 (2) Å, respectively). The bond lengths and angles within the molecule of I are in a good agreement with those found in the related compounds (Landreau et al., 2002; Adib et al., 2008; Fun, Asik et al., 2011; Fun, Hemamalini et al., 2011; Ghabbour et al., 2012; Bunev et al., 2013, 2014). The dihedral angle between the imidazo[2,1–b]thiazole and benzene planes is 18.25 (4)°. The terminal methylthio substituent lies practically within the benzene plane (the dihedral angle between the corresponding planes is 7.20 (10)°) and is turned toward the C—Br bond.

In the crystal, the molecules of I form infinite chains along [100] by intermolecular secondary Br1···N1i interactions (3.1861 (16) Å) (Fig. 3). The chains are arranged at van der Waals distances. Symmetry code: (i) 1 + x, y, z.

2. Experimental

A solution of bromine (139 µL, 430.4 mg, 2.69 mmol) in dry CHCl3 (10 mL) was added to a solutions 2–(4–(methylthio)phenyl)–5,6,7,8–tetrahydrobenzo[d]imidazo[2,1–b]thiazole (808.3 mg, 2.69 mmol) in dry CHCl3 (30 mL). The reaction mixture was stirred at room temperature for 3 h. the solvent was evaporated from the reaction mixture on rotavapor. The crude product was diluted with 5% solution Na2CO3 in water (25 mL). The precipitate was filtered and crystallized from DMF. Yield is 75%. The single–crystal of the product I was obtained by slow crystallization from DMF. M.p. = 439–441 K. IR (KBr), ν/cm-1: 3131, 3073, 1580, 1523, 1501, 1337, 1144, 815, 714. 1H NMR (600 MHz, DMSOd6, 304 K): 7.63 (d, 2H, J = 8.9), 7.54 (d, 2H, J = 8.9), 3.39–3.33 (m, 2H), 3.02–2.96 (m, 2H), 2.45 (s, 3H), 1.91–1.81 (m, 4H). Anal. Calcd for C16H15BrN2S: C, 50.66; H, 3.99. Found: C, 50.57; H, 4.08.

3. Refinement

All hydrogen atoms were placed in the calculated positions with C—H = 0.95–0.99 Å and refined in the riding model with fixed isotropic displacement parameters: Uiso(H) = 1.5Ueq(C) for the methyl group and Uiso(H) = 1.2Ueq(C) for the other groups.

Figures

Fig. 1.

Fig. 1.

The synthesis of 3-bromo-2-[4-(methylsulfanyl)phenyl]-5,6,7,8-tetrahydro-1,3-benzothiazolo[3,2-a]imidazole.

Fig. 2.

Fig. 2.

Molecular structure of I. Displacement ellipsoids are presented at the 50% probability level. H atoms are depicted as small spheres of arbitrary radius.

Fig. 3.

Fig. 3.

A portion of the crystal structure of I demonstrating the chains along [100]. The intermolecular secondary Br···N interactions are depicted by dashed lines.

Crystal data

C16H15BrN2S2 Z = 2
Mr = 379.34 F(000) = 384
Triclinic, P1 Dx = 1.634 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.3132 (3) Å Cell parameters from 4428 reflections
b = 7.5663 (3) Å θ = 2.8–32.3°
c = 14.4543 (7) Å µ = 2.93 mm1
α = 95.033 (1)° T = 120 K
β = 97.188 (1)° Prism, colourless
γ = 101.938 (1)° 0.15 × 0.10 × 0.10 mm
V = 771.03 (6) Å3

Data collection

Bruker APEXII CCD diffractometer 4508 independent reflections
Radiation source: fine-focus sealed tube 3927 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.025
φ and ω scans θmax = 30.0°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 2003) h = −10→10
Tmin = 0.668, Tmax = 0.758 k = −10→10
10352 measured reflections l = −20→20

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.073 H-atom parameters constrained
S = 1.05 w = 1/[σ2(Fo2) + (0.0377P)2 + 0.1351P] where P = (Fo2 + 2Fc2)/3
4508 reflections (Δ/σ)max = 0.001
191 parameters Δρmax = 0.67 e Å3
0 restraints Δρmin = −0.32 e Å3

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Br1 0.52846 (2) 0.33371 (2) 0.103656 (13) 0.01782 (6)
S1 0.31673 (8) 0.75383 (8) 0.55165 (4) 0.02712 (12)
N1 −0.0318 (2) 0.3490 (2) 0.10823 (11) 0.0169 (3)
C2 0.1565 (3) 0.3866 (2) 0.15151 (13) 0.0150 (3)
C3 0.2697 (2) 0.3284 (2) 0.09002 (13) 0.0146 (3)
N4 0.1494 (2) 0.2541 (2) 0.00724 (10) 0.0136 (3)
C4A 0.1551 (3) 0.1754 (2) −0.08424 (13) 0.0147 (3)
C5 0.3302 (3) 0.1399 (2) −0.11797 (13) 0.0159 (3)
H5A 0.3921 0.0696 −0.0739 0.019*
H5B 0.4195 0.2568 −0.1199 0.019*
C6 0.2819 (3) 0.0326 (3) −0.21646 (14) 0.0194 (4)
H6A 0.3978 0.0462 −0.2464 0.023*
H6B 0.2372 −0.0981 −0.2106 0.023*
C7 0.1308 (3) 0.0964 (3) −0.27918 (13) 0.0208 (4)
H7A 0.1110 0.0295 −0.3429 0.025*
H7B 0.1735 0.2276 −0.2844 0.025*
C8 −0.0560 (3) 0.0635 (3) −0.23845 (13) 0.0186 (4)
H8A −0.1458 0.1253 −0.2726 0.022*
H8B −0.1133 −0.0684 −0.2457 0.022*
C8A −0.0175 (3) 0.1366 (2) −0.13656 (13) 0.0154 (3)
S9 −0.19453 (6) 0.18940 (6) −0.07481 (3) 0.01700 (10)
C9A −0.0272 (2) 0.2722 (2) 0.02379 (13) 0.0153 (3)
C10 0.2059 (3) 0.4782 (2) 0.24789 (13) 0.0164 (3)
C11 0.0607 (3) 0.4836 (3) 0.30255 (14) 0.0191 (4)
H11 −0.0658 0.4267 0.2767 0.023*
C12 0.0991 (3) 0.5705 (3) 0.39362 (14) 0.0204 (4)
H12 −0.0014 0.5733 0.4291 0.024*
C13 0.2850 (3) 0.6542 (3) 0.43388 (13) 0.0199 (4)
C14 0.4292 (3) 0.6527 (3) 0.37994 (14) 0.0232 (4)
H14 0.5554 0.7108 0.4058 0.028*
C15 0.3898 (3) 0.5664 (3) 0.28802 (14) 0.0217 (4)
H15 0.4900 0.5676 0.2520 0.026*
C16 0.5684 (3) 0.8198 (3) 0.58283 (16) 0.0302 (5)
H16A 0.6001 0.8615 0.6502 0.045*
H16B 0.6187 0.9185 0.5472 0.045*
H16C 0.6242 0.7154 0.5682 0.045*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Br1 0.01313 (9) 0.02030 (10) 0.01932 (10) 0.00599 (7) −0.00109 (6) −0.00219 (7)
S1 0.0271 (3) 0.0327 (3) 0.0173 (2) 0.0007 (2) 0.0029 (2) −0.0057 (2)
N1 0.0157 (7) 0.0163 (7) 0.0187 (8) 0.0026 (6) 0.0042 (6) 0.0015 (6)
C2 0.0154 (8) 0.0140 (8) 0.0158 (8) 0.0029 (7) 0.0033 (7) 0.0023 (6)
C3 0.0134 (8) 0.0155 (8) 0.0154 (8) 0.0051 (7) 0.0010 (6) 0.0008 (6)
N4 0.0109 (7) 0.0153 (7) 0.0145 (7) 0.0034 (6) 0.0011 (5) 0.0010 (6)
C4A 0.0145 (8) 0.0121 (8) 0.0175 (9) 0.0030 (6) 0.0023 (7) 0.0016 (6)
C5 0.0140 (8) 0.0160 (8) 0.0186 (9) 0.0050 (7) 0.0036 (7) 0.0004 (7)
C6 0.0195 (9) 0.0217 (9) 0.0179 (9) 0.0083 (8) 0.0030 (7) −0.0010 (7)
C7 0.0221 (9) 0.0247 (10) 0.0159 (9) 0.0070 (8) 0.0025 (7) −0.0004 (7)
C8 0.0178 (9) 0.0193 (9) 0.0167 (9) 0.0036 (7) −0.0016 (7) −0.0013 (7)
C8A 0.0136 (8) 0.0140 (8) 0.0182 (8) 0.0025 (7) 0.0028 (7) 0.0007 (6)
S9 0.01080 (19) 0.0210 (2) 0.0186 (2) 0.00355 (17) 0.00092 (16) 0.00057 (17)
C9A 0.0119 (8) 0.0160 (8) 0.0186 (8) 0.0030 (7) 0.0033 (7) 0.0031 (7)
C10 0.0192 (9) 0.0129 (8) 0.0167 (8) 0.0027 (7) 0.0028 (7) 0.0010 (6)
C11 0.0176 (9) 0.0174 (9) 0.0208 (9) 0.0017 (7) 0.0021 (7) 0.0001 (7)
C12 0.0211 (9) 0.0208 (9) 0.0193 (9) 0.0037 (8) 0.0051 (7) 0.0010 (7)
C13 0.0252 (10) 0.0187 (9) 0.0145 (8) 0.0037 (8) 0.0019 (7) −0.0011 (7)
C14 0.0196 (9) 0.0252 (10) 0.0208 (10) −0.0006 (8) 0.0014 (7) −0.0028 (8)
C15 0.0205 (9) 0.0235 (10) 0.0194 (9) 0.0009 (8) 0.0063 (7) −0.0012 (8)
C16 0.0286 (11) 0.0311 (12) 0.0249 (11) −0.0003 (9) −0.0030 (9) −0.0030 (9)

Geometric parameters (Å, º)

Br1—C3 1.8693 (18) C7—H7B 0.9900
S1—C13 1.7673 (19) C8—C8A 1.498 (3)
S1—C16 1.793 (2) C8—H8A 0.9900
N1—C9A 1.312 (2) C8—H8B 0.9900
N1—C2 1.400 (2) C8A—S9 1.7529 (19)
C2—C3 1.391 (2) S9—C9A 1.7354 (19)
C2—C10 1.467 (3) C10—C15 1.399 (3)
C3—N4 1.391 (2) C10—C11 1.405 (3)
N4—C9A 1.374 (2) C11—C12 1.387 (3)
N4—C4A 1.411 (2) C11—H11 0.9500
C4A—C8A 1.349 (2) C12—C13 1.403 (3)
C4A—C5 1.492 (2) C12—H12 0.9500
C5—C6 1.537 (3) C13—C14 1.389 (3)
C5—H5A 0.9900 C14—C15 1.396 (3)
C5—H5B 0.9900 C14—H14 0.9500
C6—C7 1.524 (3) C15—H15 0.9500
C6—H6A 0.9900 C16—H16A 0.9800
C6—H6B 0.9900 C16—H16B 0.9800
C7—C8 1.537 (3) C16—H16C 0.9800
C7—H7A 0.9900
C13—S1—C16 103.71 (10) C8A—C8—H8B 109.9
C9A—N1—C2 104.13 (15) C7—C8—H8B 109.9
C3—C2—N1 110.13 (16) H8A—C8—H8B 108.3
C3—C2—C10 130.54 (17) C4A—C8A—C8 124.20 (17)
N1—C2—C10 119.33 (16) C4A—C8A—S9 113.31 (14)
C2—C3—N4 106.03 (15) C8—C8A—S9 122.44 (13)
C2—C3—Br1 131.99 (14) C9A—S9—C8A 89.99 (9)
N4—C3—Br1 121.98 (13) N1—C9A—N4 114.32 (16)
C9A—N4—C3 105.38 (15) N1—C9A—S9 134.58 (14)
C9A—N4—C4A 114.32 (15) N4—C9A—S9 111.08 (13)
C3—N4—C4A 140.26 (16) C15—C10—C11 117.62 (17)
C8A—C4A—N4 111.27 (16) C15—C10—C2 123.61 (17)
C8A—C4A—C5 124.77 (17) C11—C10—C2 118.73 (17)
N4—C4A—C5 123.97 (16) C12—C11—C10 121.15 (18)
C4A—C5—C6 110.25 (15) C12—C11—H11 119.4
C4A—C5—H5A 109.6 C10—C11—H11 119.4
C6—C5—H5A 109.6 C11—C12—C13 120.61 (18)
C4A—C5—H5B 109.6 C11—C12—H12 119.7
C6—C5—H5B 109.6 C13—C12—H12 119.7
H5A—C5—H5B 108.1 C14—C13—C12 118.75 (18)
C7—C6—C5 112.55 (15) C14—C13—S1 124.86 (16)
C7—C6—H6A 109.1 C12—C13—S1 116.38 (15)
C5—C6—H6A 109.1 C13—C14—C15 120.45 (19)
C7—C6—H6B 109.1 C13—C14—H14 119.8
C5—C6—H6B 109.1 C15—C14—H14 119.8
H6A—C6—H6B 107.8 C14—C15—C10 121.38 (18)
C6—C7—C8 110.44 (16) C14—C15—H15 119.3
C6—C7—H7A 109.6 C10—C15—H15 119.3
C8—C7—H7A 109.6 S1—C16—H16A 109.5
C6—C7—H7B 109.6 S1—C16—H16B 109.5
C8—C7—H7B 109.6 H16A—C16—H16B 109.5
H7A—C7—H7B 108.1 S1—C16—H16C 109.5
C8A—C8—C7 109.02 (15) H16A—C16—H16C 109.5
C8A—C8—H8A 109.9 H16B—C16—H16C 109.5
C7—C8—H8A 109.9
C9A—N1—C2—C3 −0.4 (2) C8—C8A—S9—C9A −175.86 (16)
C9A—N1—C2—C10 178.60 (16) C2—N1—C9A—N4 0.5 (2)
N1—C2—C3—N4 0.2 (2) C2—N1—C9A—S9 −178.31 (16)
C10—C2—C3—N4 −178.66 (17) C3—N4—C9A—N1 −0.4 (2)
N1—C2—C3—Br1 −178.84 (14) C4A—N4—C9A—N1 −178.63 (15)
C10—C2—C3—Br1 2.3 (3) C3—N4—C9A—S9 178.71 (12)
C2—C3—N4—C9A 0.07 (19) C4A—N4—C9A—S9 0.45 (19)
Br1—C3—N4—C9A 179.24 (12) C8A—S9—C9A—N1 177.7 (2)
C2—C3—N4—C4A 177.6 (2) C8A—S9—C9A—N4 −1.11 (14)
Br1—C3—N4—C4A −3.2 (3) C3—C2—C10—C15 17.2 (3)
C9A—N4—C4A—C8A 0.7 (2) N1—C2—C10—C15 −161.53 (18)
C3—N4—C4A—C8A −176.6 (2) C3—C2—C10—C11 −164.91 (19)
C9A—N4—C4A—C5 −179.12 (16) N1—C2—C10—C11 16.3 (3)
C3—N4—C4A—C5 3.5 (3) C15—C10—C11—C12 −1.1 (3)
C8A—C4A—C5—C6 −6.7 (3) C2—C10—C11—C12 −179.12 (17)
N4—C4A—C5—C6 173.18 (16) C10—C11—C12—C13 −0.5 (3)
C4A—C5—C6—C7 39.6 (2) C11—C12—C13—C14 1.7 (3)
C5—C6—C7—C8 −63.1 (2) C11—C12—C13—S1 −177.96 (15)
C6—C7—C8—C8A 49.1 (2) C16—S1—C13—C14 −6.6 (2)
N4—C4A—C8A—C8 175.79 (16) C16—S1—C13—C12 173.04 (16)
C5—C4A—C8A—C8 −4.3 (3) C12—C13—C14—C15 −1.2 (3)
N4—C4A—C8A—S9 −1.6 (2) S1—C13—C14—C15 178.47 (16)
C5—C4A—C8A—S9 178.26 (14) C13—C14—C15—C10 −0.5 (3)
C7—C8—C8A—C4A −17.4 (3) C11—C10—C15—C14 1.7 (3)
C7—C8—C8A—S9 159.79 (14) C2—C10—C15—C14 179.55 (18)
C4A—C8A—S9—C9A 1.59 (15)

Footnotes

Supporting information for this paper is available from the IUCr electronic archives (Reference: RK2426).

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814008976/rk2426sup1.cif

e-70-0o596-sup1.cif (24.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814008976/rk2426Isup2.hkl

e-70-0o596-Isup2.hkl (220.8KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814008976/rk2426Isup3.cml

CCDC reference: 998505

Additional supporting information: crystallographic information; 3D view; checkCIF report


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