Abstract
Helminth parasites such as the nematode Heligmosomoides polygyrus strongly inhibit T helper type 2 (Th2) allergy, as well as colitis and autoimmunity. Here, we show that the soluble excretory/secretory products of H. polygyrus (HES) potently suppress inflammation induced by allergens from the common fungus Alternaria alternata. Alternaria extract, when administered to mice intranasally with ovalbumin (OVA) protein, induces a rapid (1–48 h) innate response while also priming an OVA-specific Th2 response that can be evoked 14 days later by intranasal administration of OVA alone. In this model, HES coadministration with Alternaria/OVA suppressed early IL-33 release, innate lymphoid cell (ILC) production of IL-4, IL-5, and IL-13, and localized eosinophilia. Upon OVA challenge, type 2 ILC (ILC2)/Th2 cytokine production and eosinophilia were diminished in HES-treated mice. HES administration 6 h before Alternaria blocked the allergic response, and its suppressive activity was abolished by heat treatment. Administration of recombinant IL-33 at sensitization with Alternaria/OVA/HES abrogated HES suppression of OVA-specific responses at challenge, indicating that suppression of early Alternaria-induced IL-33 release could be central to the anti-allergic effects of HES. Thus, this helminth parasite targets IL-33 production as part of its armory of suppressive effects, forestalling the development of the type 2 immune response to infection and allergic sensitization.
Introduction
The prevalence of allergic asthma has increased dramatically in developed countries over the last century,1 while over the same period the incidence of infections, especially with parasites, has sharply decreased. This has led to the hypothesis that the immune system is modulated in the presence of parasitic infections, and in their absence is prone to hyperactivity leading to immune-mediated diseases such as autoimmunity, inflammatory bowel disease, and allergy.2, 3, 4
Asthma is a multifactorial condition, characterized by airway obstruction, hyperactivity of the airways to stimuli, and fibrosis of the lungs.5 Most asthmatic individuals are characterized by a T helper type 2 (Th2) response to allergens, with increased type 2 cytokines and eosinophilia in the lungs. Recently, the critical roles of both the airway epithelium,6 and newly described type 2 innate lymphoid cells (ILC2s)7, 8, 9, 10, 11 in the initiation and maintenance of asthma have been established. Thus, asthmatic inflammation develops through the concerted action of innate and adaptive immunity, and it is not yet known at what level helminth infection could act to suppress pathology.
Many asthmatic individuals are allergic to fungal molds, and the presence of fungi such as Alternaria in the household during early life predicts the development of asthma in later life.12 High atmospheric concentrations of fungal spores (for instance during thunderstorms) also correlates with increased hospital admissions due to asthma exacerbations.13 Thus, fungal molds may be important both as initiators and as targets of allergic responses.14
Alternaria extract is known to provoke allergic immune responses in mice, both in chronic Th2-mediated15, 16 and in acute T cell-independent administration regimes.7, 17, 18, 19 Thus it is an ideal setting in which to examine the relative roles of innate and adaptive type 2 responses during asthmatic pathology, and the effect of helminths and their products on these responses. The development of lung eosinophilia to Alternaria extract in the early (<3 days post administration) phase can be attributed to Alternaria-induced ILC2 activation and IL-5 and IL-13 production.7 ILCs, a non-B, non-T lymphocyte subset that expresses ICOS, CD44, CD25, and ST2 (the IL-33 receptor), respond to the alarmin cytokines IL-25 or IL-33 by producing large amounts of IL-5 and IL-13, are required for resistance to some parasites,20 and are instrumental for allergic responses in the lung.7, 8, 9, 10, 11 After Alternaria administration, both early ILC2 responses and eosinophilia have been shown to be critically dependent on IL-33 signaling, and were abrogated or ablated in IL-33-, ST2- (IL-33 receptor) or MyD88- (the IL-33-receptor signaling adaptor) deficient mice.7, 17, 21 Critically, these early responses are unchanged in recombinase-activating gene (RAG)-deficient mice and are therefore independent of the adaptive immune system.7, 17
Heligmosomoides polygyrus is a natural parasite of wild mice, which is used as a laboratory model of chronic intestinal helminth infection.22 H. polygyrus infection has multiple immunomodulatory effects including induction of regulatory T cells,23, 24 regulatory B cells,25 and suppressive or suppressed dendritic cells.26, 27, 28 Infection also suppresses inflammatory responses in models of asthma, food allergy, diabetes, and colitis.4 Many of the suppressive effects of infection can be attributed to H. polygyrus excretory/secretory (HES) products, including Treg induction29 and dendritic cell suppression.26, 30 Our aim is to identify suppressive molecules in HES with a view to develop these as novel therapeutic agents for human disease.
Recently, we described suppression of allergic airway responses in an alum adjuvant-dependent model of asthma by coadministration of HES.31 Alum-mediated sensitization is effected by the intraperitoneal route, and while this stimulates a strong pro-allergic Th2 response, initiating events may not well represent those at the airway epithelium. In particular, early lung alarmin responses are not induced during intraperitoneal alum administration, and ovalbumin (OVA)-Alum model responses (unlike those induced by Alternaria) are intact in MyD88-deficient mice, which lack receptor signaling from IL-1-family cytokines such as IL-33.32 In studying interactions between the innate and adaptive compartments, we therefore decided to examine a protocol in which airway inflammation is dependent on sensitization directly within the airways, using the clinically relevant Alternaria allergen and the model T-cell antigen OVA. As presented below, the HES products of H. polygyrus proved to be highly efficacious at suppressing the allergic response evoked in the airways.
Results
HES suppresses inflammation and pathology in a mouse model of asthma
In studying how helminth parasites may modulate allergic responses, we previously reported that H. polygyrus infection,33 or the administration of secreted products from cultured parasites (HES31) is able to suppress the expression of airway allergic inflammation in mice primed with allergens in alum adjuvant by the intraperitoneal route. Because this mode of sensitization is not physiologically related to the development of human asthma, we tested the ability of HES to inhibit allergy following airway sensitization, in a model of asthma similar to that described by Kobayashi et al.15
Mice were sensitized by intranasal administration of OVA protein with extract of the fungal organism Alternaria alternata, and the OVA-specific response was measured following the intranasal delivery of OVA protein alone 14 days later (Figure 1a). OVA challenge elicited a substantial eosinophilic infiltrate in the bronchoalveolar lavage (BAL) and lung tissue of mice which had been primed with OVA in the presence of Alternaria (Figure 1b,c; Supplementary Figure 1 online), while little change in neutrophils was observed (Figure 1d). No inflammation was seen in mice primed with soluble OVA alone, and only slight infiltration in animals receiving a phosphate-buffered saline (PBS) sham airway challenge (Figure 1e).
When HES was coadministered with the sensitizing dose, however, a striking reduction in inflammation was seen (Figure 1b,c,e; Supplementary Figure 1), with eosinophils reduced to levels of unchallenged mice. The suppressive effect of HES was ablated by heating to 95 °C for 20 min before administration (Figure 1f), implying that this activity is dependent on native protein conformation, and is in contrast to the heat-stable suppressive effects of HES when administered at sensitization in the OVA-Alum model of asthma.31 Notably, HES is known to contain a heat-labile molecule with the ability to signal through the mammalian TGF-β receptor.29 To investigate the role of the TGF-β pathway, we tested the effect of administering an amount of recombinant TGF-β which equated to the activity within HES. At the same time, we also tested Bovine Serum Albumin (BSA) as an unrelated protein to examine whether any form of antigen competition was reducing the allergic response to OVA. In neither case could the suppressive effect of HES be recapitulated (Figure 1g).
HES suppresses both innate and adaptive type 2 immunity
The allergic response in OVA-Alternaria-primed mice displayed all the canonical features of type 2 immune responsiveness. Thus, the type 2 cytokines IL-4 and IL-5 were significantly upregulated in BAL supernatants from allergic mice, along with a trend for increased IL-13 (Figure 2a). In mice receiving HES at priming, these cytokine responses were suppressed without any evident switch to IFN-γ or IL-17A (Figure 2a). BAL fluids also contained elevated levels of the type 2 myeloid cell response markers RELM-α and Ym1,34 which were again suppressed by HES coadministration, although only significantly so in the case of RELM-α (Figure 2b).
Within the lungs of sensitized mice, the dominant Th2 response was reflected by enhanced ex vivo intracellular staining of lymphocytes for IL-4, IL-5, and IL-13 by CD4+ T cells, alongside a small increase in IFN-γ and a trend for increased IL-17A production. Th2 cytokine expression was diminished in recipients of HES (Figure 2c), although to a lesser degree than noted for total cytokines in the BAL (Figure 2a). We also examined the ILC compartment, defined by expression of ICOS in the absence of classical lineage markers (ICOS+Lineage–). A marked increase in the production of IL-4, as well as IL-5 and IL-13, was found within this subset in allergic mice each of which was almost completely abolished in mice that had received HES at sensitization (Figure 2d; Supplementary Figure 2).
We further characterized cytokine-producing cells in the lungs of these mice by calculating absolute numbers of CD4+ T cell and ILC2 cytokine-producing cells (Figure 2e,f). Both IL-4-, IL-5-, and IL-13-producing CD4+ T cells and ILC2s were dramatically reduced by HES coadministration. Although numbers of ILC2s producing IL-4, IL-5, and IL-13 in allergic mice were respectively 50-fold, 3-fold, and 10-fold lower than cytokine-producing CD4+ T cells, the reduction in cytokine-producing cell numbers with HES addition in ILC2s was 6.6-, 4.9-, and 8.3-fold, and in CD4+ T cells it was only 3.2-, 3.4-, and 3.7-fold, respectively. With the known ability of ILC2s to make extremely large amounts of IL-5 and IL-13,35 they are likely to have a disproportionately large role in the production of these cytokines, and hence the potent suppression of ILC2s by HES could have a major impact.
HES is more effective at suppressing ILC2 than OVA-specific T-cell responses
To measure allergen-specific, rather than total, cytokine responses, we transferred OVA-specific transgenic DO11.10 T cells to mice before sensitization with Alternaria extract, OVA and HES. As before, we found significant decreases in lung ILC2 IL-13 production when HES was coadministered (Figure 2g). In the lung-draining lymph nodes, however, the marked increase in proportions and numbers of DO11.10 T cells expressing IL-4 in the allergic responders was unaffected by administration of HES (Figure 2h; Supplementary Figure 3), with similar results seen in lung DO11.10 cells (Supplementary Figure 3). We also examined Foxp3 expression within the transferred DO11.10 population; this was particularly high in the OVA:OVA control group that did not receive Alternaria and presumably reflects tolerance induction by soluble antigen.36 Most notably, following OVA-Alternaria priming the proportions of DO11.10 cells expressing Foxp3 were unchanged by HES administration (Figure 2i), indicating that expansion of Foxp3+ regulatory T cells does not readily account for the suppression of allergy in vivo.
Taken together, these data indicate that in this model HES suppresses total Th2 responses, but does not appear to suppress OVA-specific Th2 responses, while suppression of ILC2 responses is very potent. Therefore, we hypothesized that the suppression of allergic inflammation in this model by HES is more dependent on suppression of ILC2 than direct modulation of the OVA-specific T-cell compartment. Thus, we decided to investigate the role of ILC and the cytokines that induce them further.
Allergic responses to Alternaria depend on MyD88 and IL-33, but not on IL-25 or TLR4 stimulation
To ensure this model is fully dependent on an adaptive immune response to OVA, it was repeated in RAG-deficient mice, which showed no BAL or lung eosinophilic or ILC2 responses at challenge (Figure 3a,b; Supplementary Figure 4A). As ILC2s are known to be activated by IL-25 and IL-33,7, 20 the course of allergic inflammation was followed in mice deficient in IL-17RB (the IL-25-specific subunit of the receptor), IL17RBxST2 (the IL-25 and IL-33 receptors), and MyD88xTRIF, as IL-33 requires MyD88-mediated signal transduction or TLR4. In IL-17RB-deficient mice, BAL and lung eosinophil (Figure 3c; Supplementary Figure 4B) and ILC2 (Figure 3d) responses were similar to those in wild-type BALB/c mice, and suppression with HES coadministration was equally profound in the presence or absence of IL-25 signaling. In contrast, IL17RBxST2-deficient mice had severely reduced BAL and lung eosinophil and ILC2 responses, and no suppression with HES administration was evident (Figure 3e,f; Supplementary Figure 4C). MyD88xTRIF-deficient mice had no detectable BAL or lung eosinophilic or ILC2 response with any treatment (Figure 3g,h; Supplementary Figure 4D). Finally, TLR4-deficient mice showed similar levels of BAL and lung eosinophilia, and ILC2 IL-13 production (Figure 3i,j; Supplementary Figure 4E). As MyD88, but not TLR4 signaling, was found to be required for the type 2 response to Alternaria,37 and Alternaria has been reported to stimulate high levels of IL-337, 17 it is likely that the inability of MyD88xTRIF-deficient mice to respond in our model is due to the lack of IL-33 signaling. Taken together, these results indicate an important role for IL-33 (but not IL-25 or TLR4) signaling in this model.
HES suppresses early innate responses to Alternaria
Alternaria administration is known to induce ILC2 responses and eosinophil accumulation in the first days after administration, in a mechanism dependent on IL-33 signaling, before and independent of involvement of the adaptive immune system.7, 17 We therefore tracked the immune response over the first 48 h following the in vivo exposure to Alternaria and HES. In this setting, HES coadministration completely ablated the BAL and lung eosinophil response to Alternaria (Figure 4a,b). To accurately assay ILC2 activation (in the absence of Phorbol Myristate Acetate/Ionomycin stimulation), we administered Alternaria/HES to IL-13-GFP reporter mice, and found substantial suppression by HES of the expansion of IL-13-GFP+ ILC2s at 48 h post administration which were lineage negative but ICOS+, CD44+, and CD25+ (Figure 4c; Supplementary Figure 5). We also assessed ILC2 intracellular cytokine production over the first 48 h after Alternaria/HES administration and found decreased ILC2 production of IL-4, IL-5, and IL-13 (Figure 4d–f). As in the Alternaria-OVA model, when HES was heat treated, it lost its ability to suppress early eosinophilia and ILC2 IL-13 production (Figure 4g,h). To address the role of the TGF-β mimic in HES, we again administered recombinant TGF-β, and were not able to replicate the suppressive effect of HES (Figure 4i). To discount any T-cell contribution to this effect, we repeated the exposure in RAG-deficient mice; despite the absence of adaptive lymphocytes, marked eosinophilia (Figure 4j) and ILC2 expression of IL-13 were observed at 48 h following Alternaria administration (Figure 4k), both of which were suppressed by HES. In addition, we were able to exclude a physical effect, such as digestion, of HES upon Alternaria extract by replicating suppression in mice given HES 6 h before the separate administration of Alternaria (Figure 4l).
HES suppresses Alternaria-induced IL-33 release
To capture the early events following Alternaria exposure, BAL and lung tissue samples were analyzed for cytokines and type 2 markers at 1, 24, and 48 h post administration with and without HES (Figure 5a–d). BAL IL-5, RELM-α, and Ym1 were all induced by 24 h after Alternaria administration, and these responses were all suppressed by HES coadministration (Figure 5a–c). These responses are all independent of the adaptive immune system, as they are unchanged in RAG-deficient mice (Supplementary Figure 6). IL-33 was only detectable in the BAL 1 h after Alternaria administration (Figure 5d) as reported previously,7, 17 and was also potently suppressed by HES at this time point. Similarly to the effects seen at later time points, the suppression of IL-33 at 1 h by HES was again shown to be heat labile (Figure 5e). Finally, to confirm the active production of IL-33 by live cells, we utilized IL-33-Citrine reporter mice,21 which showed upregulation of IL-33 expression in epithelial cells after Alternaria administration, and a suppression of this response with HES (Figure 5f). Suppression of IL-33 reporter expression was also evident in the Alternaria/OVA model, with a significant upregulation of IL-33-Citrine in allergic mice, and suppression when HES was coadministered with the sensitizing dose (Figure 5g; Supplementary Figure 7).
Recombinant IL-33 administration abrogates HES suppression
As the proximal event in the Alternaria-induced response appears to be IL-33 production, and that response is suppressed by HES, we evaluated whether provision of exogenous IL-33 would circumvent HES suppression of downstream eosinophilia and ILCs activation. First, the short-term in vivo response to IL-33 itself in RAG-deficient mice, given in the absence of Alternaria, was tested. As shown in Figure 6a–c, although HES could slightly decrease the BAL eosinophilic response to IL-33, both lung eosinophilia and ILC2 IL-13 production were unchanged.
Finally, we investigated whether the ability of exogenous IL-33 to short-cut HES suppression also pertained to the development of the adaptive allergic response to OVA challenge in the airways. Mice were sensitized with Alternaria-OVA, with or without HES and recombinant IL-33, as shown in Figure 6d. The reduction in BAL eosinophilia with HES (Figure 6e), the Th2 response in the lung (Figure 6f), and the ILC2 IL-13+ response (Figure 6g) were all negated by a single administration of IL-33 at sensitization only.
Discussion
The ability of helminth infections to downmodulate allergic reactivity in vivo31, 33, 38 has stimulated the search for molecular mechanisms of suppression that may offer new routes to prevention and treatment of allergic disease in humans. An important step toward this goal is that non-living secreted products of these parasites can recapitulate protection against allergy in vivo.4 We now show that HES, secreted by H. polygyrus, suppresses the early IL-33 to Alternaria and suppresses the later type 2 (especially ILC2) allergic response. This is the first example to our knowledge of a soluble parasite product suppressing early alarmin and ILC pathways.
Our results do not exclude pathways of suppression other than reduced IL-33 release by HES in allergic responses, in fact it seems likely that H. polygyrus has developed a plethora of suppressive molecules to act against type 2 immune responses at multiple levels. However, we believe the most likely mechanism of HES suppression in this model is blockade of early IL-33 release upon allergen administration, leading to a smaller early ILC2 response, and smaller allergic recall responses at later time points.
IL-33 is a pivotal alarm cytokine in infection and allergy, directly stimulating not only ILCs,7 but also macrophages, osteoclasts, Th2 cells, mast cells, DCs, and other subsets expressing T1/ST2, the IL-33 receptor.39 Downstream IL-33 elicits high levels of IL-5 and IL-13 production by IL-33-stimulated ILC2s, culminating in a potent pro-allergic response that can be protective against helminth infection. Hence, the ability of helminth products to inhibit IL-33 release may have evolved to promote parasite survival, and can account for some of the anti-allergic effects of parasite infection in vivo. Indeed, IL-33 itself can promote immunity to nematodes,40, 41 and IL-33-deficient mice are impaired in their expulsion of parasite species such as Nippostrongylus brasiliensis.20
HES suppressed IL-33 responses to Alternaria administration; however, the upstream mechanisms involved in IL-33 release are still somewhat controversial. It is established that IL-33 does not require caspase-mediated cleavage to activate its receptor, unlike the related IL-1-family members IL-1β and IL-18, suggesting that it acts as an alarmin molecule, released when cells undergo necrosis.42 Indeed, rather than being converted into an active form during apoptosis, IL-33 is inactivated by caspases,43 inferring that it serves as a danger signal released under damage-induced, but not programmed, cell death. However, living cells can also release IL-33 in response to mechanical stress,44 danger signals such as ATP,17 the epithelial-derived factor Trefoil Factor 2,45 and indeed IL-33 itself induces IL-33 transcription in live cells.21 Therefore, IL-33 released by dying cells may induce further IL-33 production by healthy cells.
It is possible that HES acts solely in the extracellular milieu to suppress IL-33 release, for example, by reducing levels of extracellular ATP. Several active apyrases have been identified in HES,46 which degrade ATP and ablate its ability to bind to inflammatory purinergic signaling receptors. Alternatively, as macrophage IL-33 production is suppressed by endogenous TGF-β,47 the TGF-β activity of HES29 could have a similar role in this model. When we attempted to replicate the effects of HES by using recombinant mammalian TGF-β, however, we saw no effect. The possibilities remain, however, that the HES TGF-β mimic is more efficacious in vivo and/or acts in synergy with other HES components.
An intriguing finding in the recall setting, in which Alternaria+OVA-primed mice were challenged in airways with OVA, is that ILC2 responses were found to be T cell dependent, as they were absent from RAG-deficient mice or from intact mice sham challenged with PBS after Alternaria/OVA sensitization. The T-cell factor responsible for ILC2 induction is unknown, but it is tempting to speculate that T-cell IL-2 is responsible as Alternaria-responsive lung ILC2s express the IL-2 receptor CD257 and IL-2 can activate ILC2s.48
The suppression of allergic responses by soluble parasite mediators has major implications for the Hygiene Hypothesis and the search for novel therapeutic agents against allergic disease. The suppression of initial IL-33 production has a clear effect upon ILC2 generation, and most likely impacts on activation of other innate cell types, which together enables the parasite to survive in the host. Further, these changes can help explain the observation that parasite-infected individuals have a lower probability of developing allergy and asthma. Identification of the parasite immunomodulators involved in this suppression could result in the development of novel therapeutic agents that may be used to replicate the protective effects of parasitic infection at the molecular level, resulting in new strategies for protection against allergic disease.
Methods
Parasites and reagents. The life cycle of H. polygyrus bakeri was maintained, and HES products prepared, as described elsewhere.49 Class IV Ovalbumin (Sigma, Gillingham, Dorset, UK) was lipopolysaccharide (LPS) depleted by Triton X-114 phase separation,50 and the levels of LPS present in HES and depleted OVA were below 0.1 and 0.01 IU LPS per μg protein respectively by the Limulus Amoebocyte Lysate assay (Lonza, Slough, UK). HES was heat inactivated at 95 °C for 20 min. A. alternata extract (Greer) was dissolved in PBS and filter sterilized. Bovine Serum Albumin (BSA) was purchased from Sigma. The carrier-free recombinant TGF-β and IL-33 (R&D Systems, Abingdon, UK) was dissolved in sterile PBS.
Mice. BALB/c, C57BL/6, IL-17BR-deficient, IL-17BRxST2-double deficient, MyD88xTRIF-double deficient, TLR4-deficient, RAG-2-deficient, DO11.10, IL-33-Citrine,21 and IL-13-GFP20 mice were bred in-house at the University of Edinburgh and accommodated according to Home Office regulations.
Airway allergy models. In early time-point experiments, 5 μg HES was administered with 50 μg Alternaria extract in 50 μl PBS. Mice were killed 1, 24, or 48 h later as indicated. In the Alternaria+OVA model (see Figure 1a), 20 μg LPS-depleted OVA protein, 50 μg Alternaria extract, and/or 10 μg HES were administered intranasally in 50 μl PBS. Challenges of 20 μg OVA protein in 50 μl PBS were administered intranasally on days 14, 15, and 16 after sensitization, and mice killed on day 17. In some experiments, 20 μg BSA, 200 ng rIL-33, or 4 ng rTGF-β was coadministered with Alternaria extract. For DO11.10 cell transfer, single-cell suspensions of spleen and lymph-node cells were CD4+ purified by MACS separation (Miltenyi Biotec, Bisley, UK) according to the manufacturer's instructions. In all, 1 × 106 CD4+ cells were transferred by intravenous injection.
Tissue preparation. At kill, bronchoalveolar cells were prepared by lavaging lungs with 500 μl PBS containing 0.5% BSA (for cytokine measurement in cell-free supernatant), followed by another three lavages to collect remaining cells. Single-cell suspensions of lung tissue were prepared by digesting the right lobes of the lung in 2 U ml−1 liberase TL (Roche, Burgess Hill, UK) and 80 U ml−1 DNase (Life Technologies, Paisley, UK) at 37 °C with agitation for 35 min. Draining mediastinal lymph nodes and digested lung tissue were macerated through 70 μm cell strainers. For histology, lungs were inflated with, and collected into, 10% buffered formalin, incubated overnight at 4 °C, then transferred to 70% ethanol, paraffin embedded and sectioned, and stained following standard protocols for Hemotoxylin and Eosin and Periodic Acid Schiff.
Flow cytometry. Cells were surface stained with fluorescently labeled antibodies to CD11c, SiglecF, Gr1, CD11b, CD4, TcRβ, CD3, CD19, CD8α, CD49b, KJ1–26, ICOS, CD25, CD44, and ST2 or the relevant isotype controls. For intracellular Foxp3 staining, the eBioscience Foxp3 Fix/Perm kit (eBioscience, Hatfield, UK) was used. For intracellular cytokine staining, cells were stimulated for 4 h at 37 °C with 500 ng ml−1 Phorbol Myristate Acetate, 1 μg ml−1 Ionomycin, and 10 μg ml−1 Brefeldin A (Sigma). Cells were surface stained, then permeabilized with the BD Biosciences Fixation/Permeabilisation kit (BD Biosciences, Oxford, UK) before staining for IFN-γ, IL-4, IL-5, IL-10, IL-13, and IL-17A. Live/dead Fixable Yellow or Aqua dyes (Invitrogen) were used to exclude dead cells. Samples were analyzed by flow cytometry using Becton-Dickinson FACSCanto or LSR-II flow cytometers (BD Biosciences). Cell types were characterized as: CD11c+SiglecF+ (alveolar macrophages), SiglecF+CD11c–CD11b+GR1lo (eosinophils), Gr1hiCD11bhiCD11c–SiglecF– (neutrophils) and CD4+CD11b− (T helper cells). ILC2s were characterized as lineage– (CD3/CD19/CD4/CD5/CD8α/TcRβ/CD49b/CD11b/CD11c) and ICOS+.
ELISA. RELM-α and Ym-1 were measured by ELISA, using rabbit anti-mouse RELM-α, and biotinylated rabbit anti-mouse RELM-α, compared with a recombinant RELM-α standard (Peprotech, London, UK), or the Chitinase 3-like/ECF-L (Ym1) DuoSet kit (R&D Systems) according to the manufacturer's instructions. IL-33 was measured using the R&D Systems ELISA kit according to the manufacturer's instructions.
Cytokine Bead Array. Cytokine levels were detected in cell-free BAL supernatant. IL-4, IL-5, IL-10, IL-13, IFN-γ, and IL-17A levels were detected using BD cytometric bead array Flex-set kits (BD Biosciences), and were acquired on a BD FACSArray.
Statistics. All data were analyzed using Prism 6 (Graphpad Prism, La Jolla, CA). Groups were analyzed by one-way ANOVA, with a Šídák's multiple comparisons post test comparing all groups with the OVA only positive control. Unless otherwise indicated differences are not significant. ***P<0.001, **P<0.01, *P<0.05.
Acknowledgments
We thank the American Asthma Foundation (HJMcS, NFB, RMM), the Wellcome Trust (KAS, RMM), Asthma UK (HJMcS) and the MRC (ANJMcK) for funding support, and Kara Filbey, Yvonne Harcus and Elaine Robertson for production of parasite materials and assistance with the studies presented.
The authors declared no conflict of interest.
Footnotes
SUPPLEMENTARY MATERIAL is linked to the online version of the paper at http://www.nature.com/mi
Supplementary Material
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