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. Author manuscript; available in PMC: 2015 Jul 1.
Published in final edited form as: Proteins. 2013 Nov 23;82(7):1128–1141. doi: 10.1002/prot.24478

Table II.

2OVG lattice: MM-PBSA energies of crystal packing interfacesa

Interfaceb ΔEvdwc ΔEele ΔEele + ΔGPB ΔGtot
1 −79.99 ± 5.31d 224.47 ± 19.94 43.08 ± 7.56 −49.56 ± 2.76
−77.03 ± 0.07 79.47 ± 18.24 37.14 ± 1.91 −52.13 ± 1.79
2 −10.35 ± 1.79 346.29 ± 8.50 11.37 ± 2.05 −0.73 ± 0.57
−14.26 ± 1.51 244.82 ± 7.04 12.43 ± 1.45 −3.96 ± 0.40
3e −26.12 ± 2.04 119.31 ±11.94 18.25 ± 1.33 −12.06 ± 1.82
−31.71 ± 0.66 46.24 ± 8.10 19.66 ± 1.41 −17.12 ± 1.11
4 −28.48 ± 1.18 261.88 ± 7.93 22.37 ± 1.83 −11.30 ± 0.96
−27.62 ± 1.82 149.00 ± 5.87 20.21 ± 1.82 −12.59 ± 0.94
5 −12.17 ± 1.12 267.78 ±11.33 13.35 ± 1.14 −1.78 ± 0.89
−5.55 ± 0.61 134.99 ± 1.85 5.79 ± 0.55 −1.45 ± 0.22
6 −9.16 ± 1.41 92.96 ±16.55 4.47 ± 1.18 −6.90 ± 2.14
−6.92 ± 1.78 63.46 ±17.88 5.55 ± 1.43 −3.43 ± 0.87
a

For each packing interface, MM-PBSA energies (kcal/mol) are presented for the WT (rows with normal font) and mutant (rows with italicized font) crystal simulations.

b

The source and target chains for each interface are the following: 1: A(x,y,z), A(-x,-x+y,-z-1/3); 2: A(x,y,z), A(-x,-x+y,-z+2/3); 3: A(x,y,z), A(-y+1,x-y+1,z-1/3); 4: A(x,y,z), A(x-y,-y+1,-z+1/3); 5: A(x,y,z), A(y-1,x,-z); 6: A(x,y,z), A(y,x,-z). For the heterotypic interfaces (3, 4, and 5), each energy term are averaged over six unique copies formed by the simulated unit cell. Energy terms for the homotypic interfaces (1, 2, and 6) are averaged over three unique copies.

c

The energy term designations follow as in Table I.

d

Standard errors are computed as in Table I.

e

Interface 3 contains the Q27P mutation site and is denoted by bold and underlined font.