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. 2013 Jul 11;4(8):569–572. doi: 10.1007/s13238-013-3903-2

The sequence signature of an Ig-fold

Jia-Huai Wang 13903,23903,
PMCID: PMC4022342  NIHMSID: NIHMS582017  PMID: 23842991

Abstract

Ig superfamily (IgSF) constitutes the largest superfamily in human genome. In particular, Ig-like domains are the most abundant structural module within cell surface receptors, functioning in nervous as well as immune system. Here I describe some key sequence signature of an I-set Ig-like domain from known structures of IgSF members. These signature residues define the I-set Ig-like domain, which should aid structural and functional studies of cell surface receptors.

References

  1. Benian GM, Kiff JE, Neckelmann N, Moerman DG, Waterston RH. Nature. 1989;342:45–50. doi: 10.1038/342045a0. [DOI] [PubMed] [Google Scholar]
  2. Bork P, Holm L, Sander C. J Mol Biol. 1994;242:309–320. doi: 10.1006/jmbi.1994.1582. [DOI] [PubMed] [Google Scholar]
  3. Chothia C, Jones EY. Annu Rev Biochem. 1997;66:823–862. doi: 10.1146/annurev.biochem.66.1.823. [DOI] [PubMed] [Google Scholar]
  4. Freigang J, Proba K, Leder L, Diederichs K, Sonderegger P, et al. Cell. 2000;101:425–433. doi: 10.1016/S0092-8674(00)80852-1. [DOI] [PubMed] [Google Scholar]
  5. Gao GF, Tormo J, Gerth UC, Wyer JR, McMichael AJ, et al. Nature. 1997;387:630–634. doi: 10.1038/42523. [DOI] [PubMed] [Google Scholar]
  6. Harpaz Y, Chothia C. J Mol Biol. 1994;238:528–539. doi: 10.1006/jmbi.1994.1312. [DOI] [PubMed] [Google Scholar]
  7. Hemmingsen JM, Gernert KM, Richardson JS, Richardson DC. Protein Sci. 1994;3:1927–1937. doi: 10.1002/pro.5560031104. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Holden HM, Ito M, Hartshorne DJ, Rayment I. J Mol Biol. 1992;227:840–851. doi: 10.1016/0022-2836(92)90226-A. [DOI] [PubMed] [Google Scholar]
  9. Jones EY, Davis SJ, Williams AF, Harlos K, Stuart DI. Nature. 1992;360:232–239. doi: 10.1038/360232a0. [DOI] [PubMed] [Google Scholar]
  10. Kern PS, Teng M-K, Smolyar A, Liu J-H, Liu J, et al. Immunity. 1998;9:519–530. doi: 10.1016/S1074-7613(00)80635-4. [DOI] [PubMed] [Google Scholar]
  11. Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. Nature. 2001;409:860–921. doi: 10.1038/35057062. [DOI] [PubMed] [Google Scholar]
  12. Meijers R, Puettmann-Holgado R, Skiniotis G, Liu JH, Walz T, et al. Nature. 2007;449:487–491. doi: 10.1038/nature06147. [DOI] [PubMed] [Google Scholar]
  13. Newman PJ, Berndt MC, Gorski J, White GC, 2nd, Lyman S, et al. Science. 1990;247:1219–1222. doi: 10.1126/science.1690453. [DOI] [PubMed] [Google Scholar]
  14. Politou AS, Gautel M, Pfuhl M, Labeit S, Pastore A. Biochemistry. 1994;33:4730–4737. doi: 10.1021/bi00181a604. [DOI] [PubMed] [Google Scholar]
  15. Reid RA, Hemperly JJ. J Mol Neurosci. 1992;3:127–135. doi: 10.1007/BF02919404. [DOI] [PubMed] [Google Scholar]
  16. Richardson JS. Adv Protein Chem. 1981;34:167–339. doi: 10.1016/S0065-3233(08)60520-3. [DOI] [PubMed] [Google Scholar]
  17. Rudolph MG, Stanfield RL, Wilson IA. Annu Rev Immunol. 2006;24:419–466. doi: 10.1146/annurev.immunol.23.021704.115658. [DOI] [PubMed] [Google Scholar]
  18. Sawaya MR, Wojtowicz WM, Andre I, Qian B, Wu W, et al. Cell. 2008;134:1007–1018. doi: 10.1016/j.cell.2008.07.042. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Su XD, Gastinel LN, Vaughn DE, Faye I, Poon P, et al. Science. 1998;281:991–995. doi: 10.1126/science.281.5379.991. [DOI] [PubMed] [Google Scholar]
  20. Tan K, Zelus BD, Meijers R, Liu JH, Bergelson JM, et al. EMBO J. 2002;21:2076–2 086. doi: 10.1093/emboj/21.9.2076. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Teichmann SA, Chothia C. J Mol Biol. 2000;296:1367–1383. doi: 10.1006/jmbi.1999.3497. [DOI] [PubMed] [Google Scholar]
  22. Wang J-H, Springer TA. Immunol Rev. 1998;163:197–215. doi: 10.1111/j.1600-065X.1998.tb01198.x. [DOI] [PubMed] [Google Scholar]
  23. Wang R, Natarajan K, Margulies DH. J Immunol. 2009;183:2554–2564. doi: 10.4049/jimmunol.0901276. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Wu H, Kwong PD, Hendrickson WA. Nature. 1997;387:527–530. doi: 10.1038/387527a0. [DOI] [PubMed] [Google Scholar]
  25. Yang Y, Jun C-D, Liu J-H, Zhang R, Joachimiak A, et al. Mol Cell. 2004;14:269–276. doi: 10.1016/S1097-2765(04)00204-7. [DOI] [PubMed] [Google Scholar]

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