Table 4.
Database | Link | Annotation | Potential functions | Phenotype associations | Reference | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
miRNA loci | miRNA targets | miRNA-processing genes | miRNA stability and biogenesis | Gain or loss of target sites | Expression | Diseases | |||||
miRvar | http://genome.igib.res.in/mirlovd | √ | × | × | √ | N.A. | × | √ | [41] | ||
PolymiRTS 2.0 | http://compbio.uthsc.edu/miRSNP | √ | √ | × | × | miRNA seed SNPs, 3'UTR SNPs | √ | √ | [24] | ||
Patrocles | http://www.patrocles.org/Patrocles.htm | √ | √ | √ | √ | 3'UTR SNPs | × | × | [19] | ||
miRNASNP | http://www.bioguo.org/miRNASNP | √ | √ | × | √ | miRNA seed SNPs, 3'UTR SNPs | × | × | [13] | ||
dbSMR | http://miracle.igib.res.in/polyreg | × | √ | × | × | 3'UTR SNPs | × | × | [34] | ||
SNP effects on microRNA targeting | http://www.bigr.medisin.ntnu.no/mirsnpscore | × | √ | × | × | 3'UTR SNPs | × | × | [35] | ||
miRdSNP | http://mirdsnp.ccr.buffalo.edu/browse-genes.php | × | √ | × | × | 3'UTR SNPs | × | √ | [53] | ||
MirSNP | http://cmbi.bjmu.edu.cn/mirsnp | √ | √ | × | × | 3'UTR SNPs | × | × | [32] |