Epidermal Merkel Cells are Mechanosensory Cells that Tune Mammalian Touch Receptors

Abstract

Touch submodalities, such as flutter and pressure, are mediated by somatosensory afferents whose terminal specializations extract tactile features and encode them as action potential trains with unique activity patterns¹. Whether non-neuronal cells tune touch receptors through active or passive mechanisms is debated. Terminal specializations are thought to function as passive mechanical filters analogous to the cochlea’s basilar membrane, which deconstructs complex sounds into tones that are transduced by mechanosensory hair cells. The model that cutaneous specializations are merely passive has been recently challenged because epidermal cells express sensory ion channels and neurotransmitters^2,3; however, direct evidence that epidermal cells excite tactile afferents is lacking. Epidermal Merkel cells display features of sensory receptor cells^4,5 and make “synapse-like” contacts^5,6 with slowly adapting type I (SAI) afferents^7–9. These complexes, which encode spatial features such as edges and texture¹, localize to skin regions with high tactile acuity, including whisker follicles, fingertips and touch domes. Here, we show that Merkel cells actively participate in touch reception in mice. First, Merkel cells display fast, touch-evoked mechanotransduction currents. Second, optogenetic approaches in intact skin show that Merkel cells are both necessary and sufficient for sustained action-potential firing in tactile afferents. Third, recordings from touch-dome afferents lacking Merkel cells demonstrate that Merkel cells confer high-frequency responses to dynamic stimuli and enable sustained firing. These data are the first to directly demonstrate a functional, excitatory connection between epidermal cells and sensory neurons. Together, these findings indicate that Merkel cells actively tune mechanosensory responses to facilitate high spatio-temporal acuity. Moreover, our results suggest a division of labour in the Merkel cell-neurite complex: Merkel cells signal static stimuli, such as pressure, whereas sensory afferents transduce dynamic stimuli, such as moving gratings. Thus, the Merkel-cell neurite complex is unique sensory structure with two receptor cell types specialized for distinct elements of discriminative touch.

We first asked whether Merkel cells display touch-activated currents. Merkel cells from Atoh1/nGFP mice were purified by flow cytometry for whole-cell recordings¹⁰ (Fig. 1a–b). Merkel cells showed displacement-dependent inward currents (Fig. 1c–d) whereas keratinocytes lacked mechanosensitive currents over the same stimulus range (N=4). Merkel-cell currents averaged 370±80 pA at peak and 20±6 pA at steady state (Extended Data Fig. 1 and Table 1). They displayed steep displacement-operating ranges (1.6±0.1 μm; Fig. 1d and 1e) and millisecond rise times (Fig. 1f and Extended Data Table 1), which were limited by stimulus-probe velocity. This suggests fast gating mechanisms, similar to force-gated channels in hair cells and invertebrate mechanosensory neurons¹¹.

Figure 1. Merkel cells exhibit touch-evoked ionic currents and preferentially express Piezo2.

a, Schematic of whole-cell recordings from dissociated Merkel cells¹⁰. b, Merkel cells were identified based on GFP fluorescence and were stimulated by a glass probe driven by piezoelectric actuator. Scale bar, 10 μm. c, Representative traces of mechanosensitive currents from two Merkel cells (V_hold=−70 mV). Inactivation kinetics were estimated from single-exponential fits (red lines). d, Current-displacement relationships from individual Merkel cells (N=6; indicated by distinct colors). Currents were normalized to peak and fitted with Boltzmann functions (R² > 0.97). e–g, Activation and inactivation kinetics and operating ranges for individual Merkel cells. h, Current-voltage relationship of mechanosensitive currents (N=5). Peak current at each holding potential was normalized to peak current at −75 mV. Reversal potential was estimated by linear regression (red line; R² = 0.88). Inset: representative traces at each holding potential (denoted by colors). i, qPCR analysis of Piezo1 and Piezo2 transcripts in purified Merkel cells and epidermis. Markers of keratinocytes (KRT14 and KRT1) and Merkel cells (Atoh1) verified selective enrichment of Merkel cells. **P<0.0001, ***P≤0.001 (N=4).

We next asked whether biophysical properties of touch-activated currents matched those of identified mechanosensitive channels. Currents showed fast inactivation time constants (8±2 ms; Fig. 1g), similar to those of dorsal root ganglia (DRG) neurons¹². Mechanotransduction currents showed a linear current-voltage relation (reversal potential, 8±3 mV, Fig. 1h), indicating non-rectifying, non-selective cation channels. Moreover, they were attenuated by Ruthenium Red (RR; Extended Data Fig. 1). These biophysical properties are consistent with mechanosensitive channels encoded by Piezo genes (Piezo2: τ_inactivation=7±1 ms; E_rev=9±2 mV; RR block ~80%)¹³. Indeed, quantitative PCR analysis showed that Merkel cells express Piezo1 and Piezo2, and that Piezo2 is enriched in Merkel cells compared with epidermis (Fig. 1i).

Merkel cells also exhibited robust touch-evoked increases in cytoplasmic Ca²⁺ (Extended Data Fig. 1). As these cells were not voltage clamped, calcium signals likely reflected calcium entry through mechanotransduction channels, opening of voltage-activated calcium channels and subsequent calcium-induced calcium release, as is the case for hypotonic-activated responses in Merkel cells¹⁰. Collectively, our findings demonstrate for the first time that Merkel cells are capable of transducing touch stimuli into excitatory responses in the absence of sensory neurons or keratinocytes.

How might the Merkel cell’s rapidly inactivating mechanotransduction currents lead to slowly adapting responses in vivo? Like hair cells and Drosophila bristles¹⁴ Merkel-cell mechanotransduction channels display steady-state currents that are ~10% of peak responses (Extended Data Fig. 1). These currents are likely to be amplified by voltage-activated calcium channels^4,10. Indeed, an accompanying manuscript demonstrates that inward currents of ≤20 pA are sufficient to depolarize Merkel cells to voltage-activated ion-channel thresholds¹⁵. Moreover, computational modelling predicts that a rapidly adapting transduction current with a small steady-state component can account for SAI firing patterns¹⁶. Finally, each SAI afferent innervates a cluster of Merkel cells, whose contributions will be integrated at spike initiation zones.

We next tested whether activating Merkel cells in the intact skin is sufficient to excite tactile afferents. We used optogenetics to selectively depolarize Merkel cells without directly stimulating their associated sensory afferents (Fig. 2a). A previous microarray screen identified cholecystokinin (CCK) as a Merkel cell-specific transcript in the epidermis⁴. To express Channelrhodopsin-2¹⁷ (ChR2) in Merkel cells in vivo, we crossed Cck-IRES-Cre mice¹⁸ with mice harboring a ChR2-tdTomato fusion at the Gt(Rosa)26Sor locus¹⁹. Heterozygote Cck^Cre/+;ChR2^loxP/+ mice showed strong expression of ChR2-tdTomato in touch-dome Merkel cells, whose fluorescence was easily identifiable in intact skin (Fig. 2b). Whole-cell recordings in vitro confirmed that ChR2⁺ Merkel cells exhibited light-activated inward currents (N=5, Extended Data Fig. 2). We confirmed the absence of ChR2 expression in SAI afferents via immunohistochemistry of skin cryosections (Fig. 2c) and whole-mounts (Extended Data Fig. 3a–e). ChR2 expression was not observed in any cutaneous afferent (N=21 mice). Epidermal ChR2-tdTomato expression was limited to Merkel cells; however, ChR2-tdTomato was observed in some dermal cell types (Extended Data Figs. 3).

Figure 2. Merkel cells are necessary and sufficient to elicit sustained action-potential trains in touch-dome afferents.

a, Schematic of mouse ex vivo skin-nerve recordings. b, Confocal image of a ChR2-expressing touch dome in a living skin-nerve preparation. Scale bar, 20 μm. c, Immunostaining of skin cryosections shows expression of ChR2-tdTomato in Merkel cells (Keratin-8, K8) but not in touch-dome afferents (Neurofilament heavy, NFH). Scale bar, 20 μm. d, During electrophysiological recording, ChR2-expressing Merkel cells and blue-light stimuli were imaged separately using different filter sets (bottom insets). Merged image illustrates the illuminated area (top panel). Confocal reconstruction of this touch dome is in Extended Data Fig. 2a–e. Scale bar, 200 μm. e, Light pulses of increasing intensities elicited phase-locked action potentials from the touch dome in d. e′, Comparison of spike shapes evoked by light (blue) and touch (black) confirmed single-unit recording. f, Mean instantaneous firing frequency (IFF) versus light intensity for a single touch-dome afferent. Blue trace shows mean IFFs from e. Red trace shows mean IFFs evoked by light intensities presented in decreasing order. The averages of these stimuli (black) were analysed further. f′, Mean IFFs on a log-intensity scale (N=12 single units). Data were fit with a four-parameter Weibull sigmoidal function (R²=0.95). g–h, A sustained light-evoked response from the touch-dome afferent in d–e with corresponding ISI histogram. i–j, Optogenetic silencing of ArchT-expressing Merkel cells. i, Representative 3-min recording. j, Box-plot of firing rates during light-off (N=3 units, n=20 10-s periods) and light-on (same units, n=23 10-s periods). Two outliers are firing rates from initial light-on periods. P=0.001.

To acquire touch-dome specific responses, we used laser-coupled fibre optics with a collimator lens to restrict illumination to touch domes (Fig. 2d). When touch domes were presented with 5-s light pulses, action potentials were observed in phase with light stimulation (Fig. 2e). All afferents that displayed light-evoked responses were touch-sensitive (N=12), and were classified as SAI afferents based on physiological criteria. We confirmed that the touch- and light-evoked activity derived from single units with multidimensional spike-sorting²⁰ and by comparing spike waveforms (Fig. 2e′). Light-evoked responses showed increased firing with increased light intensities (Fig. 2f–f′). Illumination of tissue that lacked Merkel cells, including skin areas adjacent to touch domes and saphenous nerve trunks, did not evoke action potentials (Extended Data Fig. 4). Illumination of touch domes with green light (545 nm), which does not activate ChR2, also failed to elicit afferent firing. Light-evoked responses from SAI afferents (N=3 units) were also observed when ChR2-tdTomato expression was driven by the epidermis-specific K14^Cre locus²¹ (Extended Data Fig. 5), confirming that light-evoked responses requires the presence of ChR2-expressing epidermal cells. Thus, we conclude that depolarization of epidermal Merkel cells is sufficient to excite action potentials in SAI afferents. To our knowledge, this is the first functional proof of an excitatory connection between any epidermal cell type and tactile afferents in skin.

In SAI afferents, touch stimuli elicit biphasic responses with a dynamic phase characterized by high-frequency firing at touch onset, and a static phase characterized by sustained firing with highly variable inter-spike intervals (ISIs)^7–9. To test whether Merkel-cell photostimulation recapitulated these properties, we recorded action potential trains elicited by 3-min light stimuli (Fig. 2g–h). In excellent agreement with canonical SAI responses^7–9, light-evoked responses showed continuous firing throughout stimulation with coefficients of variation (CoV) of ISIs >0.5 (mean±SD, 1.17±0.14, N=12). Interestingly, light-evoked responses lacked high-frequency firing at stimulus onset (e.g., Fig. 3a–b). Thus, selective activation of epidermal Merkel cells is sufficient to elicit action potential trains whose activity patterns mimic the static phase of touch-evoked SAI responses.

Figure 3. Atoh1^CKO and Piezo2^CKO mice show intermediately adapting (IA) responses.

a, Mechanically evoked responses from touch-dome afferents in control and Atoh1^CKO (K14^Cre;Atoh1^LacZ/flox) mice. Top trace shows ramp-and-hold displacements at three magnitudes with corresponding action potential trains below. Dashed line marks the point of skin contact (0 mm). Boxes indicate dynamic (dark gray: 1.5 s after displacement command onset) and static phases for analysis (light gray: 4 s after the beginning of hold command). b, IFFs of the responses in a. c, Proportion of IA responses to supra-threshold displacements in touch-dome afferents (N=5 control and N=6 Atoh1^CKO units). d, Mean number of spikes in dynamic and static phases of saturating responses. e, Mean interspike intervals (ISIs) of Atoh1^CKO (N=6 units), Piezo2^CKO (N=6 units) and their respective control genotypes (N=5 units per genotype). Asterisks indicate statistically significant differences between mutant and control genotypes in Fisher’s exact test (c) and Student’s t test (d–e). *P<0.05; **P<0.02; ***P<0.01.

We next tested whether optogenetic silencing of Merkel cells inhibits touch-evoked firing in SAI afferents. We selectively expressed Archaerhodopsin-3 (ArchT), a green-light-sensitive, hyperpolarizing proton pump²², in Merkel cells (Cck^Cre/+;ArchT^loxP/+; Extended Data Fig. 6). During 3-min displacements, touch domes were presented with a series of 10-s light pulses. We observed a tenfold reduction in median touch-evoked firing rates during light stimuli (N=3; Fig. 2i–j). Inhibition grew progressively stronger during sustained displacement, becoming almost complete with successive light presentations (Fig. 2i). Thus, Merkel-cell depolarization is necessary for robust static phase firing in SAI afferents.

To determine whether Merkel cells also contribute to the dynamic phase of touch-evoked SAI responses, we analysed epidermal-specific Atoh1 conditional knockout (Atoh1^CKO) mice (K14^Cre;Atoh1^LacZ/flox), which completely lack Merkel cells²³. Touch domes were innervated by myelinated afferents that contain nodes of Ranvier, suggesting that they are capable of firing action potentials (Extended Data Fig. 7). A previous unbiased survey of touch-sensitive afferents reported a selective loss of SAI responses in Hoxb1^Cre;Atoh1^Flox/LacZ mice, which lack Merkel cells from development but retain innervation of touch domes and footpads²⁴. Here, we used a targeted approach to analyse firing properties of afferents that selectively innervate touch domes, which were identified during recording based on FM1-43 uptake²⁵. We found that touch domes in Atoh1^CKO mice were innervated by mechanosensitive Aβ afferents (conduction velocity: 10.2–18.5 m/s; N=6); however, their firing patterns differed markedly from SAI responses^8,9 in control genotypes (Fig. 3a–b; N=5). First, static phase firing was truncated in Atoh1^CKO mice compared with control afferents, which maintained firing throughout 5-s stimuli (Fig. 3a–b). Thus, responses of Atoh1^CKO touch-dome afferents could be classified as intermediately adapting^9,26 (IA; Fig. 3c). Second, Atoh1^CKO responses displayed spike counts (Fig. 3d and Extended Data Table 2 and firing rates that were markedly lower than control genotypes (mean±SD: Atoh1^CKO: 25±8 Hz, Control: 59±25 Hz; P=0.004). Notably, Atoh1^CKO lacked high-frequency firing and short ISIs in both dynamic and static phases (peak firing rates: Atoh1^CKO: 79±40 Hz; Control: 238±69 Hz; P=0.003; Extended Data Fig. 8 and Extended Data Table 2). Together, these data indicate that touch-dome afferents have mechanosensory terminals capable of responding to touch, but do so with substantially altered firing properties.

We next compared the responses of touch-dome afferents in Atoh1^CKO with epidermal-specific Piezo2 knockout mice¹⁵ (Piezo2^CKO). In the latter, Merkel cells and touch-dome afferents develop normally and are retained through adulthood¹⁵. Although these mutations disrupt distinct molecular pathways and cause different anatomical phenotypes, we found a remarkable degree of concordance between static-phase firing patterns. Mutant touch-dome afferents displayed a similar proportion of IA responses (Fig. 3c)¹⁵ and showed similar increases in mean ISIs during static displacement (Fig. 3e and Extended Data Fig. 8). Together, these data indicate that Piezo2-dependent Merkel-cell signaling is essential for proper SAI responses to sustained pressure.

Our study sheds new light on the role of Merkel cells in touch reception. Our findings demonstrate that Merkel cells are touch-sensitive cells that actively tune mechanosensory afferents by conferring two features of the SAI response: sustained responses and high-freqency firing. First, by maintaining firing throughout mechanical stimulation, SA afferents inform the brain about pressure^1,27. Our optogenetic approach demonstrates that Merkel-cell activation elicits, and silencing reversibly suppresses, sustained SAI firing. This provides the first direct evidence that Merkel cells are not simply passive mechanical filters in the skin. Moreover, recordings from Atoh1^CKO and Piezo2^CKO mice show that SAI afferents cannot properly convey static phase information without intact Merkel cells. Second, during active tactile exploration, high-frequency firing is important for encoding object features (e.g., edges and curvature) with high information content^27,28. Although touch-dome afferents in Piezo2^CKO showed similar dynamic responses to control mice, Atoh1^CKO afferents showed markedly reduced dynamic firing. Thus, Merkel cells perform Piezo2-independent functions that enhance dynamic responses, which is predicted to facilitate high spatio-temporal acuity of tactile perception. Consistent with this prediction, Atoh1^CKO mice display behavioral deficits in texture preference²⁹. These effects might be due to differences in SAI afferent development, touch-dome mechanics or Piezo2-independent signalling mechanisms.

How might Merkel cells contribute to the SAI afferent’s unique firing patterns? Our findings suggest two new models for touch reception. First, the Merkel cell-neurite complex is a compound sensory system with two receptor cell types that mediate different aspects of touch transduction³⁰ (Fig. 4). A similar division is found in the visual system, which also provides information on object shape and movement. In retina, rods are optimized for low-light conditions and cones for high-acuity, color vision. Second, the contribution of Merkel cells to dynamic firing indicates that they could function in signal amplification, analogous to outer hair cells in the mammalian cochlea. These mechanosensory cells actively expend energy to tune the cochlea’s frequency selectivity and mechanical sensitivity. A key question that remains is the nature of the excitatory mechanisms that convey signals between Merkel cells and SAI afferents.

Figure 4. Model of active Merkel-cell inputs in touch reception.

Deformation of the skin opens mechanotransduction channels in SAI afferents (1) to initiate action potential firing at the onset of dynamic stimuli (2). The presence of Merkel cells boosts dynamic firing through Piezo2-independent mechanisms. Skin deformation simultaneously activates Piezo2-dependent¹⁵ mechanotransduction channels in Merkel cells (3) to depolarize these cells, which produces calcium entry (4) and release of unidentified neurotransmitters (5) that trigger sustained firing (6). Schematic after Iggo and Muir⁷.

Methods

Experimental Animals

All experimental procedures followed National Institute of Health guidelines and were approved by Columbia University Institutional Animal Care and Use Committee (IACUC). Preliminary studies performed at Baylor College of Medicine (BCM) were approved by the BCM IACUC.

Optogenetic experiments were performed on 6–10 week old male and female mice. For optogenetic activation of Merkel cells, Cck^Cre/+;ChR2^loxP/+ and K14^Cre;ChR2^loxP/+ mice were generated by crossing Ai27D mice (B6.Cg-Gt(ROSA)26Sor^{tm27.1(CAG-COP4*H134R/tdTomato)Hze/J}), which conditionally express a ChR2-tdTomato fusion protein from the Gt(Rosa)26Sor locus¹⁹, with one of two Cre-expressing strains. For Cck^Cre/+;ChR2^loxP/+, we used Cck-IRES-Cre mice (Cck^{Tm1.1(Cre)Zjh/J}), a knock-in mouse line that expresses Cre recombinase directed by the endogenous Cholecystokinin (Cck) promoter/enhancer elements¹⁸. For K14^Cre;ChR2^loxP/+, transgenic K14-Cre (Tg^KRT14-cre1Amc/J) mice²¹ were used. For optogenetic inhibition of Merkel cells, Cck^Cre/+;ArchT^loxP/+ mice were generated by crossing Cck-IRES-Cre mice¹⁸ with B6.Cg-Gt(ROSA)26Sor^{tm40.1(CAG-AOP3/EGFP)Hze/J} mice, which conditionally express a ArchT-EGFP fusion protein from the GT(Rosa)26Sor locus (MGI Ref. ID: J:191265).

Atoh1 conditional knockout (Atoh1^CKO) mice were generated as described previously²³. Mice of the K14^Cre;Atoh1^LacZ/flox genotype lacked expression of Atoh1 in K14-expressing cells and were designated as Atoh1^CKO mice. Genotypes that lacked either Cre and/or LacZ were designated as controls. Female mice (8–15 week old) were used for experiments.

Piezo2^CKO and control genotypes were generated as described in the accompanying manuscript¹⁵. Female mice (6–19 weeks) were used for experiments.

For whole cell patch clamp experiments, Merkel cells were dissociated from male and female Atoh1/nGFP pups (P2-P5)³¹ and Cck^Cre/+;ChR2^loxP/+ pups (P5).

Immunohistochemistry

For cryosections, mouse skin was shaved, depilated (Surgi-cream) and dissected either from the back or from the hind limb of Cck^Cre/+;ChR2^loxP/+ mice or from female Atoh1^CKO mice and littermate controls (8–10 weeks of age). Tissue was fixed in 4% paraformaldehyde (PFA), cryoprotected in 30% sucrose, frozen and sectioned at a thickness of 16–20 μm. Cryosectioned skin was labelled at 4°C overnight with primary antibodies against Keratin-8 (TROMA1, DSHB, 1:100), Neurofilament H (Abcam: ab4680, 1:2000), Nestin (Aves Labs, NES, 1:200), S100 (Dako, Z0311, 1:500) or βIV spectrin (Gift from Dr. Matthew Rasband, 1:200³²). Secondary goat AlexaFluor-conjugated antibodies (Invitrogen) directed against rat (Alexafluor 488; A11006), chicken (Alexafluor 647; A21449), rabbit (Alexafluor 488; A11034) IgG were used for 1 h at room temperature (1:1000).

For whole-mount immunostaining, skin pieces (2–5 mm in diameter) containing two to five touch domes (recorded and neighbouring touch domes) were dissected from the skin-saphenous nerve preparation after ex-vivo recording. The following steps were all performed at 4°C: Tissue was fixed in 4% paraformaldehyde (PFA) for 2–4 hours and blocked overnight with 5% normal goat serum containing 0.3% TritonX-100 (5% NGST) + 10% DMSO + M.O.M. blocking reagent (Vector Labs, MKB-2213, 2 drops/ml). The next day tissue was washed with PBS containing 0.3% TritonX-100 (PBST) for several hours and incubated with primary antibodies in 5% NGST for 3–6 days. Primary antibody concentrations were the same as indicated for cryosections. After four washes (30 min to 1 h each) with PBST, tissue was incubated with secondary antibodies in 5% NGST for two days (1:500). After four washes with PBST (30 min to 1 h each), skin was dehydrated in serial tetrahydrofuran solutions and cleared in dibenzyl ether, according to published methods³³. Skin was imaged in dibenzyl ether by confocal microscopy (Zeiss exciter equipped with 20X, 0.8NA and 40X 1.3 NA objective lenses). For whole mounts, we used the same antibodies as for cryosections, plus an additional two: primary antibody against Neurofilament 200 (Sigma-Aldrich, N0142, 1:300); secondary antibody against mouse IgG (Invitrogen, Pacific Blue, P31582).

In vitro electrophysiology

The Merkel cell isolation and patch clamp recording procedure were described previously¹⁰. Currents were recorded from Merkel cells after 1–2 days in culture with an Axopatch 200B amplifier, a Digidata 1440A interface and a personal computer running pClamp 10 software (Axon Instruments). Pipette resistance ranged from 0.9–3.5 MΩ. The perforated patch technique was used for all whole-cell recordings. Pipette tips were filled with internal solution and backfilled with internal solution supplemented with 100–180 μg/ml Amphotericin B (Sigma-Aldrich). After a gigaohm seal was established, the series resistance decreased to 10–20 MΩ within 5 min. Membrane capacitance was measured from the decay constant during a 1 ms voltage step using pClamp software. Signals were filtered at 5 kHz and digitized at 25 μs. Leak currents were compensated during whole-cell recordings with a P/6 leak subtraction protocol. Currents in the whole-cell configuration were recorded in extracellular solution containing (in mM): 140 NaCl, 5 KCl, 10 HEPES (pH 7.4, adjusted with NaOH), 10 D-glucose, 2 MgCl₂, and 2 CaCl₂. The pipette solution contained (in mM): 70 KOH, 70 KCl, 10 NaCl, 1 MgCl_2, 0.5 CaCl₂, 5 EGTA, 2 MgATP, and 10 HEPES (pH 7.2, adjusted with D-gluconate).

The somata of dissociated Merkel cells were stimulated for 50 ms by families of displacements (0.3-μm steps) every 5 s, with a glass probe (tip diameter: 2–3 μm) driven by a piezoelectric actuator (model PA8/12; Piezosystem Jena; power supply ENV40 C; Piezosystem Jena). The glass probe was positioned at an angle of 48° to the cover slip. Displacements were triggered by a pClamp-controlled command voltage passed to the actuator driver through a low-pass filter (f_cutoff: 500 Hz; model LPF-100A, Warner Instruments). The rise time of the driving signal was 0.6±0.1 ms, calculated as the latency for the probe to travel 10–90% of a half-maximal displacement. The speed of the mechanical stimulator was 2 μm/ms. In combination with the rise time of the driving signal, the latency of the stimulator was estimated at ~1 ms. Mechanically evoked currents were measured at a holding potential of −70 mV. We chose dendritic Merkel cells for recordings, which typically show fast activation and inactivation kinetics (Fig. 1c). In addition, mechanosensitive currents with fast activation kinetics were occasionally recorded from oval-shaped Merkel cells. These tended to show both fast (<10 ms) and slow inactivation kinetics (10–200 ms).

Displacement magnitudes were visually calibrated daily. To ensure that mechanosensitive channels were not activated at rest, displacements began from an offset position located 1–2 μm away from the soma³⁴. Thus, each stimulus family included ~6 displacements that did not contact the soma. To correct for this variable offset, displacements are reported relative to each cell’s mechanical threshold (labelled as “0” in Fig. 1d). Mechanical threshold was defined as the displacement that elicited a peak current ≥4 times the SD of the pre-stimulus noise level (12.5 ms before stimulus onset). For clarity, this offset has been subtracted from the stimulus families shown in Fig. 1d.

Given that stimulus-response relations are normalized to each cell’s mechanical threshold, their lateral shifts likely reflect a compliance in series with mechanotransduction machinery. One possibililty is the coupling between the cell and the coverslip, which was not systematically controlled in these in vitro recordings.

Current-displacement relationships were fitted for the normalized current with a Boltzmann equation of the form: ${\mathrm{I}}_{\text{norm}}(\mathrm{x})=1/(1+\text{exp}(-((\mathrm{x}-{\mathrm{x}}_{50})/\mathrm{s})))$, where x is the displacement (in μm), x₅₀ is the displacement that produces half-maximal amplitude of the peak current, and s is the current sensitivity to displacement. For estimating the activation kinetics, the period from 10 to 90% of a maximal evoked current was calculated and denoted as rise time t_10–90%. For estimating the inactivation kinetics, single-exponential fitting was conducted with Clampfit for 47 and 50 ms from peak current time point for touch- and light-evoked current, respectively. Both activation and inactivation kinetics where the displacement was x₅₀ were estimated by linear interpolation of adjacent four points. For calculating the operating range, we adopted the method used to study hair cells: the operating range of the I_norm(x) relation was the net deflection required to evoke from 10 to 90% of the maximum response³⁵. To estimate reversal potential, mechanical stimuli were delivered at multiple holding potentials (−75 to +50 mV in 25 mV increments). Holding potentials were stepped 150 ms prior to mechanical stimulation (50 ms).

For the Ruthenium Red blockade experiment, 50 mM stock solution was prepared in DMSO and dissolved into extracellular solution at a final concentration of 100 μM. Mechanical stimulation was given at least five times after reaching the mechanical threshold of each Merkel cell. To quantify the blocking effects of Ruthenium Red, we compared maximal inward current (peak current (I_peak), averaged from a 250-μs time window), with current at the end of touch stimulation (steady state current (I_ss), averaged from a 5-ms time window).

FM1-43 Dye Injections

FM1-43 (Biotium; #70020) was used to visualize SAI receptive fields (touch domes) in Atoh1-nGFP and Atoh1^CKO mice. FM1-43 was diluted at 1.5 mM in sterile PBS and injected subcutaneously (70 μl per mouse). Hindlimb skin for ex vivo skin-nerve electrophysiology was harvested 12–14 h after injection.

Ex vivo skin-nerve electrophysiology

Light- and touch-evoked responses in the skin were recorded after dissecting the hindlimb skin and saphenous nerve according to published methods⁹. Briefly, the skin was placed epidermis-side-up in a custom chamber and perfused with carbogen-buffered synthetic interstitial fluid (SIF) kept at 32°C with a temperature controller (model TC-344B, Warner Instruments). The nerve was kept in mineral oil in a recording chamber, teased apart and placed onto a silver recording electrode connected with a reference electrode to differential amplifier (model 1800, A-M Systems). The extracellular signal was digitized using a DT304 A/D board (DataWave Technologies) and recorded using Sci-Works Experimenter software (DataWave Technologies). SAI receptive fields (touch domes) were visualized using a fluorescence microscope equipped with tdTomato (for Cck^Cre/+;ChR2^lox/P and K14^Cre;ChR2^lox/P mice) and GFP (for Cck^Cre/+;ArchT^loxP/+, Atoh1/nGFP and Atoh1^CKO mice) filter sets. Light stimuli were delivered with a fiber-optic coupled blue laser, and a stereomicroscope coupled with a Xenon arc lamp (described below).

For these studies, we focused on touch-dome afferents, which innervate Merkel cells in wildtype animals, as described by Iggo and Muir⁷. The afferents generally have no spontaneous firing, respond selectively to pressure applied directly to a touch dome, are particularly sensitive to moving stimuli but are insensitive to hair tugging and skin stretch⁷. To identify responses from these afferents in mutant and control genotypes, we used a mechanical search paradigm with a fine glass probe. Afferents were classified as ‘touch-dome afferents’ according to the following criteria: 1) Aβ conduction velocity (≥9 m/s), 2) punctate receptive fields restricted to one or more fluorescently labeled touch domes, 3) insensitive to pressure applied to skin areas adjacent to touch domes, 4) insensitive to hair tugging but responsive when the hair is bent to compress the touch dome. Touch-sensitive afferents that did not meet these criteria were not analyzed further. Responses were classified as intermediately adapting (IA) if firing ceased during the first 4 s of the static phase, and slowly adapting (SA) if spikes were observed throughout the duration of the 5-s hold phase.

Recordings and analysis of Piezo2^CKO and their controls were performed blind to genotype. For other strains, directed recordings could not be performed blind to genotype because transgenic and control Merkel cells differed in the appearance under the fluorescence microscope used to confirm the presence of touch domes in the receptive field. In the Atoh1^CKO strain, FM1-43 labelling differs from control mice because the former lack FM1-43-labeled Merkel cells²⁴ (Extended Data Fig. 7). In transgenic mice expressing ChR2 or ArchT, the presence of fluorescent Merkel cells was confirmed for each touch dome analysed.

Mechanical responses were elicited with von Frey monofilaments and a custom-built mechanical stimulator. The automated mechanical stimulator applied stimuli with an indenter (tip diameter: 1.6 mm), and stimuli were commanded using a model XPS comitial motion controller and driver system (Newport) connected to a PC computer. Movement of the indenter was controlled with custom-made software and measured with a laser distance-measuring device (OptipNCDT 1402, Micro-Epsilon). Touch stimuli consisted of ramp and 5-s hold indentations. First-order approximation of approach speed was 3.2 mm/s. Mechanical displacements ranged from 0.4–1.6 mm in depth. The period between successive displacements was 60–70 s. For optogenetic silencing, mechanical stimulation was delivered with a glass probe (tip diameter ~50 μm) mounted on a mechanical stimulator.

Conduction velocity was measured by electrically stimulating identified receptive fields. Spike sorting and data analysis were done off-line in MATLAB and Wave clus²⁰.

Optical stimulation

For ex vivo electrophysiology of Cck^Cre/+;ChR2^loxP/+ and K14^Cre;ChR2^loxP/+ mice, light responses were evoked with a fibre-optic-coupled DPSS laser (473 nm; model BL473T3-150FC, Shanghai Laser & Optics Century Co.). A collimator lens was mounted on the end of the optical fibre (100 μm core) to prevent lateral spread of the light stimulus. The light source was positioned one focal distance above the skin so that the light stimulus (150–200 μm in diameter) was focused when projected on the touch dome. Light intensity was measured with a PM100USB power meter (Thorlabs). Duration of light stimuli was controlled via TTL delivered from a pulse stimulator (model 2100, A-M Systems). To reconstruct intensity-response curves we used 5-s light flashes of seven different intensities. All recordings were performed in low-light conditions and a period between successive illuminations (30 s) allowed for ChR2 recovery after desensitization³⁶. To test sustained light responses, we used 3-min constant illuminations of 50 μW.

For ex vivo electrophysiology of Cck^Cre/+;ArchT^loxP/+ mice, inhibitory green-light pulses were delivered by the LAMBDA LS Xenon Arc Lamp (Sutter Instruments) coupled to a stereoscopic microscope (Olympus) equipped with a 545-nm (30-nm half-width) excitation filter. Recorded touch domes were positioned in the center of the illuminated field (5-mm diameter). Displacements (3 min) were delivered with a small glass probe (tip diameter ~50 μm). To inhibit Merkel-cell activity we used a constant intensity of 50 mW/cm² (measured at 545-nm). Duration of 10-s light pulses was monitored with a photodiode. The period between successive illuminations was also 10 s. Each recording started with a 10-s light-off period and then light-on and -off periods alternated. Every recording ended with a light-on period. The dynamic phase (first 10 s) was not included in the calculation in Fig. 2j.

To acquire light-evoked current from isolated Merkel cells that expressed ChR2, blue light stimulation was given by the LAMBDA XL light source (Sutter Instruments) for 50 ms, controlled by Metafluor software (version 7.6.3, Molecular Devices). The holding potential was −70 mV. The expression of ChR2-tdTomato in Merkel cells was visually confirmed before approaching with the pipette. 100 nM all trans-Retinal was added into extracellular solution just before recording.

Live-cell calcium imaging

After two days in culture, Merkel cells were loaded for 30 min with 3 μM fura-2 acetoxymethyl ester (Molecular Probes) in a modified Ringer’s solution (in mM): 140 NaCl, 5 KCl, 10 HEPES (pH 7.4), 10 D-Glucose, 2 MgCl₂, and 2 CaCl₂ (osmolality: 290 mmol·kg−1). Cells were given 30 min in extracellular solution to digest the ester bonds before imaging. Merkel cells were depolarized with high potassium extracellular solution containing (in mM): 75 NaCl, 70 KCl, 10 HEPES (pH 7.4), 10 D-glucose, 2 MgCl₂, and 2 CaCl₂ (osmolality: 290 mmol·kg⁻¹) as a positive control. Data were acquired with Metafluor software (version 7.6.3, Molecular Devices), and analysed with custom programs written in Igor Pro (version 5.03, Wavemetrics). Displacements (2–3 μm) were applied with a stepper motor.

Quantitative PCR analysis

Complementary DNA was synthesized with oligo-dT primers and SuperScript III (Invitrogen) from pooled Merkel cells according to published protocols (~25,000 Merkel cells collected from six P3-4 pups³⁷). Keratinocytes were harvested from three P3-4 pups and were assayed as total epidermal cell suspensions. Primers were designed with Primer3 (http://biotools.umassmed.edu/bioapps/primer3_www.cgi). Primer pairs were optimized for qPCR and validated for specificity and sensitivity in control specimens. Standardized SYBR Green amplification protocols were used on the StepOnePlus Real-time PCR System (Applied Biosystems) as suggested by the manufacturer. All gene expression experiments.used 30 ng of cDNA. Melting curves were generated for all products to confirm a single amplicon for each product. To determine gene expression in each sample, cycle thresholds (C_T) of the gene of interest were normalized to the reference gene GAPDH (ΔC_T). Quantitative PCR experiments were peformed twice, with four technical replicates per experiement. Primer sequences were:

GAPDH	5′ CACAATTTCCATCCCAGACC 3′ 5′ GTGGGTGCAGCGAACTTTAT 3′
KRT14	5′ AGATGGAGCAGCAGAACCAG 3′ 5′ CAGGAAGGACAAGGGTCAAG 3′
KRT1	5′ ATTGCTGCGTGACTTCCAG 3′ 5′ GGCTACTGCTTCCGCTCA 3′
Atoh1	5′ CCCACAGAAGTGACGGAGAG 3′; 5′ GAGGAAGGGGATTGGAAGAG 3′
Piezo1	5′ GGAAGAGGACTACCTTGGTG 3′ 5′ GCTGACCTTGTCACTGAAGA 3′
Piezo2	5′ CTTGTGAGGTCGGGTGGT 3′ 5′ ATGAGGGGATGGGGAGAG 3′

Statistics and sample sizes

Fisher’s exact test was used to evaluate differences in afferent populations (Fig. 3c). Differences between population means were assesed with unpaired Student’s t test (two tail) for normally distributed data. Since fewer than 10 afferents were included in Figs. 3d–e and Extended Data Fig. 8, we also used two-tail Mann-Whitney test, which confirmed that medians of populations indicated with asterisks were statistically different (P<0.001 for all comparisons). Variances between control and mutant genotypes were not statistically different, with the exception of static-phase ISIs from Piezo2^CKO mice (P<0.01; U value=1, Mann-Whitney).

Sample sizes were chosen based on published and pilot studies. For in vitro electrophysiology, we conducted pilot studies to measure touch-activated currents in four Merkel cells. Power analysis showed that at least two recordings are sufficient to discriminate touch activated currents from voltage- and calcium-activated potassium currents, which are the majority of transmembrane currents measured in a previous study¹⁰. For optogenic Merkel-cell silencing, the sample size was limited by the number of adult animals available for ex vivo skin-nerve preparation recording. For ex vivo recordings from Atoh1^CKO and Piezo2^CKO mice, we based samples sizes on our previous survey of touch-sensitive afferents in Atoh1^CKO mice²⁴. Among Aβ afferents, we observed eight SAI afferents in control mice (n=8/39) but none in Atoh1^CKO genotypes (n=0/27)²⁴. Thus, we reasoned that at least five afferents per group would be sufficient to observe differences in response properties of touch-dome afferents in directed recordings.

Extended Data

Extended Data Figure 1. a–b, Mechanically activated currents in Merkel cells were inhibited by Ruthenium Red (RR).

a, Representative trace of mechanically evoked current induced by 1-μm mechanical displacement. Application of RR (100 μM) attenuated mechanically activated current. b, Peak currents (I_peak) were estimated from 250 μs around peak and steady-state currents (I_ss) were estimated from the last 5 ms (black bar in 1a) of mechanical displacements. Data were normalized by I_peak for each cell. With Ruthenium Red, I_peak was reduced to 38±7% of control condition. Steady state currents were also reduced by RR (N=4; control: 9±1% of I_peak; RR: 2±1% of I_peak). c–i, Merkel cells display reversible Ca²⁺ responses to focal displacements applied to somata. c, Representative pseudocolor images of fura-2 ratios (340:380) of a Merkel cell at rest. d, A Merkel cell activated by depolarizing (high-K⁺) solution. e, A brightfield image showing the position of the stimulus probe. f–h, Peak responses corresponding to each displacement. ‘Fold Δ’ is the fold change in fluorescence ratio from baseline. Scale bar, 10 μm. i, Representative time course of mean fura-2 ratios during the touch stimuli shown above. Stimulus onset in f–h is indicated by arrows. Calcium responses were stimulus dependent. Similar responses were observed from 11 Merkel cells.

Extended Data Figure 2. ChR2⁺ Merkel cells display light-activated inward currents.

a, Light-activated currents were recorded with whole-cell, tight-seal voltage clamp methods. b, Fluorescent image of a ChR2-tdTomato expressing Merkel cell. Scale bar, 10 μm. c, Representative trace for light-activated inward currents at a holding potential of −70 mV. Inactivation kinetics were measured by fitting a single exponential curve (red).

Extended Data Figure 3. Immunostaining of ChR2-expressing touch domes.

a–e, Whole-mount staining and confocal axial projection of the touch dome shown in Fig. 2d. a, Merged image. b–d, Expression of ChR2-tdTomato was present in Merkel cells (Keratin-8, K8), but absent from sensory terminals (Neurofilament Heavy, NFH). e, Some terminal Schwann cells (Nestin)³⁸ also expressed ChR2 (arrowheads in b & e). f–i, Immunostaining of skin cryosections. f, Merged image. g–i, ChR2-tdTomato was present in some S100⁺ Schwann cells that also expressed Nestin, a marker for type II terminal Schwann cells³⁸ (arrowheads in f–i). Scale bars, 20 μm.

Extended Data Figure 4. Light-evoked activity is specific to touch-dome illumination.

a & f, Responses to light stimuli centred on a touch dome. b–e, When the light stimulus was positioned around the touch dome, no light-evoked activity is observed. Illuminating a cluster of ChR2⁺ dermal cells did not evoke any responses (c). f, To confirm that the absence of light-evoked activity was not due to the loss of Merkel cells and/or neuronal fibres, the experiment ended by re-positioning the light stimulus over the touch dome to re-elicit light-evoked activity. Images have been thresholded for clarity. Scale bars, 200 μm.

Extended Data Figure 5. K14^Cre;ChR2^loxP/+ mice exhibit light-evoked SAI activity.

a, Confocal image of a touch dome illustrating ChR2-tdTomato expression driven by K14^Cre. ChR2-tdTomato expressed much stronger in Merkel cells than in neighbouring keratinocytes. b, Light-evoked responses from the touch dome shown in a to seven light intensities as indicated. Spike sorting and clustering analysis were used to identify the unit that fired in phase with light (lower trace with spike positions and their amplitudes). c, Mean IFFs for light with varying illumination intensities on a log-intensity scale (N=3 recordings). Scale bar, 20 μm.

Extended Data Figure 6. Confocal axial projection of a touch dome shows selective ArchT-EGFP expression in Merkel cells driven by Cck^Cre.

ArchT-EGFP expression was not observed in touch-dome afferents. Scale bar, 20 μm.

Extended Data Figure 7. Structure of touch-dome afferents in Atoh1^CKO mice.

Immunostaining of skin cryosections from Atoh1^CKO and control genotypes are shown. Antibodies labelling myelinated afferents (NFH; cyan), Merkel cells (Keratin-8; yellow), nodes of Ranvier (βIV spectrin; magenta) show that the general structure of touch-dome afferents, including myelinated branches and Nodes of Ranvier (arrowheads), appears normal even in the absence of Merkel cells. Cell nuclei are labelled with DAPI (blue). Scale bar, 20 μm.

Extended Data Figure 8. Comparison of ISI distributions in Atoh1^CKO, Piezo2^CKO, and control genotypes.

a, Histogram of ISI distribution during saturating responses in Atoh1^CKO (Mean±SD, 43.4±59.2 ms, Median: 29.8 ms; n=466 intervals from N=6 units) and control genotypes (Mean±SD, 16.5±12.9 ms, Median: 13.8 ms; n=1412 intervals from N=5 units). Inset on the left illustrates all ISIs, including those >150 ms, which were excluded from the main histograms [14/466 intervals in Atoh1^CKO and 1/1412 in control genotypes]. At right, bar graphs shows the minimum ISIs during dynamic and static phases. Minimum ISIs were longer in Atoh1^CKO than control mice for both phases, indicating a loss of high-frequency firing during dynamic stimuli and static displacement (**P<0.02, ***P<0.01; Student’s t test). Mann-Whitney tests indicated that median values were also significantly different (P<0.001). b, Histogram of ISI distribution for Piezo2^CKO (Mean±SD, 41.9 ±32.3 ms, Median: 23.4 ms; n=792 intervals from N=6 units) and control genotypes (Mean±SD, 13.9±1.4 ms, Median: 11.8 ms; n=1845 intervals from N=5 units). Main histograms excluded long intervals (>150 ms; 4/792 intervals in Piezo2^CKO and 2/1845 in control mice.) Minimum ISIs were not significantly different in the dynamic phase (P≥0.76; Student’s t test and Mann-Whitney test); indicating that high-frequency firing is preserved in touch-dome afferents in these mice. For static phase firing, the means were not significantly different (P=0.095; Student’s t test); however non-parametric analysis indicated that medians differed between genotypes (P=0.0043; Mann Whitney test).

Extended Data Table 1.

Properties of mechanically and light-evoked currents in Merkel cells.

Activation kinetics (rise time, t_10–90%) was estimated as the period from 10–90% of maximally evoked currents. Inactivation kinetics (tau_inactivation) were estimated by fitting single exponential functions 5 ms after I_peak. All values were estimated by linear interpolation at displacements nearest to the half-peak response. Measurements were conducted at V_h=−70mV.

		(mean ± SEM)
Mechanically activated	Mean peak current (pA)	370 ± 80
	Mean steady state current (pA)	20 ± 6
N = 6 6 trials	Rise time t10–90% (ms)	1.0 ± 0.1
	τinactivation (ms)	8.1 ± 1.7
Light activated	Mean peak current (pA)	38 ± 2
	Mean steady state current (pA)	18 ± 1
N = 5 56 trials	Rise time t10–90% (ms)	6.4 ± 0.4
	τinactivation (ms)	12 ± 1

Extended Data Table 2.

Summary of touch-dome responses from Atoh1^CKO and control mice.

Maximum response among experimental set was chosen as representative data. Dynamic phase: period from stimulus onset (when the indenter began moving) to end of stimulation onset (indenter reaches the hold displacement depth). Static phase: initial 4s period after indenter reached commanded displacement. Unit of all values were milliseconds. Min: minimum, Max: maximum, Ave: averaged, SD: standard deviation, IA: Intermediately adapting response, CoV: coefficient of variation in static phase.

	Data ID	Dynamic phase					Static phase
		# of spikes	Min (ms)	Max (ms)	Ave±SD (ms)	Median (ms)	# of spikes	Min (ms)	Max (ms)	Ave±SD (ms)	Median (ms)	Ratio of IA (%)	CoV
Atoh1 CKO	KO 1	41	15.4	24.5	19.3±2.3	19.5	132	20.9	53.3	30.1±5.0	29.8	33	0.16
	KO 2	37	15.4	61.8	27.3±10.6	25.1	56	27.1	300.1	69.2±51.9	49.0	50	0.75
	KO 3	49	6.2	594.3	35.2±88.9	13.6	39	10.6	667.3	101.0±137.1	50.9	100	1.36
	KO 4	31	15.0	42.8	22.9±5.9	22.6	26	28.4	71.4	42.6±9.7	41.8	100	0.23
	KO 5	18	15.5	33.6	22.4±5.2	23.6	24	26.1	233.8	58.0±46.6	41.5	100	0.80
	KO 6	35	19.3	26.4	23.2±3.5	23.5	12	32.1	286.8	98.6±74.9	61.7	100	0.76
Control	Wild 1	45	7.2	35.0	12.9±6.2	10.0	201	9.4	175.7	19.9±16.3	15.4	17	0.82
	Wild 2	77	4.2	81.7	18.7±11.4	16.4	95	22.0	95.4	42.0±13.2	39.1	0	0.32
	Wild 3	74	4.8	792.8	21.5±91.6	10.3	169	4.3	80.1	23.2±15.9	19.0	0	0.69
	Wild 4	89	3.3	11.5	4.9±1.8	4.0	274	3.9	48.2	14.5±7.2	13.1	0	0.51
	Wild 5	91	3.3	39.4	8.4±6.8	5.3	312	2.9	32.8	12.8±5.2	12.3	0	0.41