Abstract
Background
Multiple tick saliva proteins, the majority of which are unknown, confer tick resistance in repeatedly infested animals. The objective of this study was to identify the 24-48 h fed Amblyomma americanum tick saliva immuno-proteome. The 24-48 h tick-feeding phase is critical to tick parasitism as it precedes important events in tick biology, blood meal feeding and disease agent transmission. Fed male, 24 and 96 h fed female phage display cDNA expression libraries were biopanned using rabbit antibodies to 24 and 48 h fed A. americanum female tick saliva proteins. Biopanned immuno-cDNA libraries were subjected to next generation sequencing, de novo assembly, and bioinformatic analysis.
Results
More than 800 transcripts that code for 24-48 h fed A. americanum immuno-proteins are described. Of the 895 immuno-proteins, 52% (464/895) were provisionally identified based on matches in GenBank. Of these, ~19% (86/464) show high level of identity to other tick hypothetical proteins, and the rest include putative proteases (serine, cysteine, leukotriene A-4 hydrolase, carboxypeptidases, and metalloproteases), protease inhibitors (serine and cysteine protease inhibitors, tick carboxypeptidase inhibitor), and transporters and/or ligand binding proteins (histamine binding/lipocalin, fatty acid binding, calreticulin, hemelipoprotein, IgG binding protein, ferritin, insulin-like growth factor binding proteins, and evasin). Others include enzymes (glutathione transferase, cytochrome oxidase, protein disulfide isomerase), ribosomal proteins, and those of miscellaneous functions (histamine release factor, selenoproteins, tetraspanin, defensin, heat shock proteins).
Conclusions
Data here demonstrate that A. americanum secretes a complex cocktail of immunogenic tick saliva proteins during the first 24-48 h of feeding. Of significance, previously validated immunogenic tick saliva proteins including AV422 protein, calreticulin, histamine release factor, histamine binding/lipocalins, selenoproteins, and paramyosin were identified in this screen, supporting the specificity of the approach in this study. While descriptive, this study opens opportunities for in-depth tick feeding physiology studies.
Electronic supplementary material
The online version of this article (doi:10.1186/1471-2164-15-518) contains supplementary material, which is available to authorized users.
Keywords: Amblyomma americanum, Tick saliva proteins, Biopanning, Immuno-proteome
Background
Ticks are reservoirs and vectors of numerous animal and human pathogenic microorganisms, including bacteria, viruses, and protozoans. Although in terms of public health impact ticks are considered second to mosquitoes, they surpass any arthropod vector in terms of diversity of disease agents that they transmit and their impact on livestock production [1, 2]. For many years ticks and tick borne diseases were considered a veterinary problem, where economic losses run into several millions of US$ annually [3]. In Brazil alone, loses due to the cattle tick, Rhipicephalus microplus were estimated at 2 billion US$ annually [4]. However in recent years, the impact of human tick borne diseases in public health have been growing.
Amblyomma americanum, previously considered a nuisance, is among important tick species in public health [5]. This tick previously established in southeastern United States has now spread to the northeast [6, 7]. A. americanum has been reported as the most pre-dominant tick species found on humans in this part of the United States [8]. This species transmits several human tick borne disease agents including Ehrlichia chaffeensis, Ehrlichia ewingii, and Francisella tularensis [9–14]. A. americanum also transmits the causative agents of southern tick associated rash illness (STARI) [15, 16], Ehrlichia ruminatium-like Panola Mountain Ehrlichia (PME) [17, 18], and has also been linked to Heartland virus [19]. There is also evidence that A. americanum may transmit Rickettsia amblyommii to humans [20]. In veterinary health, A. americanum transmits Theileria cervi to deer [21], and E. ewingii to dogs [22]. There are reports of mortality in deer fawns that were attributed to a combination of heavy A. americanum infestation and T. cervi infections [23].
Although chemical acaricide based strategies represent the dominant prevention method against tick borne disease infections, the focus is moving to developing new, more efficient and environmentally friendly strategies [24]. One of the possible alternative strategies could be the production of anti-tick vaccines. This idea is not new, as it is known for more than 80 years that immunity to tick infestation could be induced by vaccination with a whole tick or salivary gland homogenates [25, 26]. Currently, the focus is on identification of efficacious tick protein antigens, which could be expressed as recombinant vaccine antigens [27–29]. Generally, there are two groups of these antigens. The first, so called “exposed antigens” includes tick proteins that are injected into the host during the tick feeding process. The second group of antigens, known as “concealed antigens”, refers to molecules which are not in direct contact with the host and usually do not induce an immunological response, such as tick gut components [30]. In our lab we are interested in “exposed antigens” and in the prospect of finding target anti-tick vaccine antigens, in which subsequent tick infestations of immunized animals will trigger an anamnestic (elevated) antibody response and serve as a “de facto” booster shot. In this way the need for manual administering of booster shots to the host will be eliminated.
Bioactive molecules in tick saliva play important roles in facilitating blood meal feeding and transmission of tick borne disease agents. The tick feeding style of lacerating host tissue and then sucking up blood that bleeds into the wounded area is expected to stimulate host defense responses aimed at stopping blood loss and initiating tissue repair responses. Expected host responses to tick feeding activity include vasoconstriction, platelet aggregation, fibrin clot formation, inflammation, and complement activation [31]. Studies to find tick saliva proteins that facilitate feeding were modeled after the expected host responses to tick feeding. In this way vasodilators [32–35], inhibitors of platelet aggregation [36–38], anti-coagulants [39–52], anti-inflammatory proteins [53, 54], and inhibitors of complement activation [55–59] were described in several tick species. Other studies have identified apparent pain blockers, a metallo dipeptidyl carboxypeptidase from saliva of Ixodes scapularis [60] and a thiol-activated metalloendopeptidase from saliva of R. microplus [61]. In a related study, Mulenga et al. [62] and Mulenga and Azad [63] described a functional histamine release factor (HRF) in tick saliva. The presence of HRF in tick saliva was considered counter-intuitive in that HRF is pro-inflammatory [64], and on the other hand, ticks should stop the inflammation response to feed successfully.
The idea of immunizing animals against tick feeding was prompted by observations that repeated tick infestation of animals conferred protective anti-tick immunity [65, 66]. In subsequent studies immune sera of tick resistant animals bound numerous protein bands from tick salivary gland protein extracts [67, 68], suggesting that numerous tick saliva proteins provoked anti-tick immunity in repeatedly infested animals. The objective of this study was to identify and characterize 24-48 h fed A. americanum tick saliva immunogenic protein coding cDNAs. We are interested in 24-48 h post attachment tick saliva proteins because this tick feeding stage precedes some of the most important facets of tick parasitism, blood meal feeding, transmission, and acquisition of tick borne disease agents.
Methods
Ticks
Unfed A. americanum ticks for this study were purchased from tick laboratories located at Texas A&M University and Oklahoma State University. In our lab, ticks were kept at favorable conditions (room temperature and > 85% relative humidity) and fed on New Zealand White Rabbits according to the animal use protocol #2011-189 approved by Texas A & M University IACUC to AM. Six male ticks were pre-fed for three days before placing female ticks to feed. To prevent ticks from entering the inner ear, they were restricted onto the top of the rabbit ear using an orthopedic stockinet containment cell adhered onto rabbit skin using the Kamar Adhesive (Kamar Products Inc., Zionsville, IN). Fed male ticks were collected from several feeding experiments, while female ticks were manually detached at 24 and 96 h post attachment and processed for RNA extraction as described below.
Following detachment, pieces of rabbit skin were manually cleaned off the tick mouthparts using soft tissue forceps. Subsequently ticks were washed in dietylpyrocarbonate (DEPC) treated water and dried on a paper towel. Pools of eight to ten ticks were chopped up using a sharp razor blade and homogenized in 1 mL TRIzol (Life Technologies, Carlsbad, CA, USA) and stored at −80°C until total RNA extraction.
Messenger RNA extraction and cDNA preparation
Total RNA was extracted according to the detailed protocol provided by TRIzol reagent manufacturer (Life Technologies). Isolation of mRNA from prepared total RNA was done using Straight A’s™ mRNA Isolation System (Novagen, Madison, WI, USA). Total RNA was mixed with Magnetictight Oligo(dT) Particles (20 μg of particles per 1 μg of total RNA). After appropriate washes mRNA was eluted in 0.5 mL of nuclease free water by incubating at 60°C for 10 minutes. Subsequently mRNA was concentrated by mixing sample with 2 μL of Glycogen (10 mg/mL), 50 μL of 3 M sodium acetate, and 331 μL of 2-propanol, and centrifugation at 14000 × g for 5 minutes. The mRNA pellet was washed with 0.5 mL of 70% ethanol and dissolved in 25 μL of nuclease free water. Concentration of mRNA samples was determined by measuring absorbance at 260 nm using the DU 640B spectrophotometer (Beckman Coulter, Brea, CA, USA).
Fed male, 24 and 96 h fed female A. americanumphage display expression cDNA libraries
Phage display cDNA expression libraries were constructed using T7Select OrientExpress cDNA cloning System (Novagen, Madison, WI, USA). A total of 4 μg of mRNA was used to synthesize cDNA using the OrientExpress™ Oligo(dT) cDNA Synthesis Kit (Novagen, Madison, WI, USA) according to instructions. Prior to proceeding with the rest of the protocol, success of cDNA synthesis was verified by PCR amplification of tick actin gene sequence using 5′GGACAGCTACGTGGGCGACGAGG3′ and 5′CGATTTCACGCTCAGCCGTGGTGG3′ primers, and MyTaq Red Mix (Bioline USA Inc., Taunton, MA, USA). Prepared cDNA was stored at −20°C. Following verification of cDNA synthesis, cDNA ends were modified by ligating EcoRI and HindIII sticky ends at the 5′ and 3′ ends. Subsequently modified cDNA was ligated to directional EcoRI/HindIII linkers. After appropriate treatment and fractionation to remove excess linkers, cDNA was ligated into T7Select vector arms using T4 ligase (Novagen, Madison, WI, USA). Following ligation the library was packaged using T7 packaging extracts previously thawed on ice and mixed by stirring with a pipet tip. The packaging reaction was incubated for 2 h at room temperature and was stopped by adding 270 μL of sterile M9TB medium with carbenicillin (final concentration 50 μg/mL). The packaging reaction was mixed by inverting with 20 μL of chloroform and stored at 4°C.
The phage titer in the packaging reaction was determined by plaque assay [69]. Serial dilutions of packaging reaction in M9TB medium with carbenicillin, ranging from 1:103 to 1:106, were prepared. Fresh culture of Escherichia coli BLT5403 strain (OD600 = 1) in M9TB medium with carbenicillin was used as host cells for T7 phages. From each dilution, 100 μL were mixed with 250 μL of host cells and 3 mL of molten top agarose, and plated on LB agar plates with carbenicillin (final concentration 50 μg/mL). Plates were incubated at 37°C for 4 h and formed plaques were counted. The phage titer was calculated according to the formula provided in the user manual. After determining the titer, the library was amplified using the plate lysate amplification protocol according to instructions in the user manual. Phage was diluted to 1 × 106 per 10 mL of host cells (OD600 = 0.6-1.0). One mL of phages/host cells mixture was combined with 10 mL of molten top agarose and plated on 150 mm LB agar plates with carbenicillin. Plates were incubated at 37°C for 3–4 hours. When plaques on the plates became nearly confluent, each plate was incubated with 10 mL of phage extraction buffer (20 mM Tris–HCl pH 8.0, 100 mM NaCl, 6 mM MgSO4) overnight at 4°C. Phage elutes were collected, mixed with 0.5 mL of chloroform, and clarified by centrifugation at 3000 g for 5 minutes. The supernatant was mixed with 0.1 volume of sterile 80% glycerol and stored at −80°C. The titer of amplified libraries was determined using protocol described above.
Verifying quality of phage display libraries
Following amplification, the quality of the amplified libraries was verified by checking the length of cloned cDNA sequences. 10–15 plaques per library were inoculated in 5 mL of host cells (fresh culture of BLT5403 strain in LB medium with cabenicillin, OD600 = 0.5-0.6). Culture was incubated at 37°C with shaking until lysis was observed. Lysate was clarified by centrifugation at 8000 g for 10 minutes. For phage extraction 1.25 mL of 20% PEG-8000/2.5 M NaCl were mixed with 5 mL of the lysate and incubated on ice at least 30 minutes. Phages were pelleted by centrifugation at 11000 g for 20 minutes, and then re-suspended in 100 μL of STE Buffer (10 mM Tris–HCl pH 8.0, 100 mM NaCl, 1 mM EDTA). The suspension was centrifuged at 14000 g for 10 minutes and the supernatant containing phages was transferred to a fresh tube. Phage extracts were used as templates for PCR amplification of cloned cDNA using the T7Select UP (5′GGAGCTGTCGTATTCCAGTC3′) and T7Select DOWN (5′AACCCCTCAAGACCCGTTTA3′) primers. PCR products were separated by electrophoresis on 2% agarose gel.
Production of antibodies to fed male and 24 h female A. americanumtick saliva proteins
Production of antibodies to 48 h fed A. americanum tick saliva proteins was previously described [70]. The same protocol was used to produce antibodies to 24 h fed A. americanum tick saliva proteins. Rabbits were infested with 30 female ticks (15 per ear) every 24 h three times per week. This routine was repeated for four times after which antibody response to tick saliva proteins was verified. Blood was collected from rabbits approximately two weeks after the last round of tick feeding according to the protocol #2011-189 approved by Texas A & M University IACUC to AM. Rabbits were exsanguinated following humane standards by qualified veterinarians as approved by the Texas A & M University Comparative Medicine Program. Blood was left to clot overnight at 4°C to achieve maximum serum separation. Collected serum was stored at −80°C. Prior to tick infestations, rabbits were bled according to approved Texas A & M University protocols to collect pre-immune serum controls.
Biopanning protocol and phage extraction
Four rounds of biopanning were done to generate immuno-reactive biopanned libraries. In the first step, parent libraries, fed male, 24 and 96 h fed female phage display libraries were immuno-screened with antibodies to 24 and 48 h fed A. americanum tick saliva proteins using a biopanning kit according to instructions by the manufacturer (Novagen, Madison, WI, USA). 96-well EIA/RIA plates (Corning, Corning, NY, USA) were used in our biopanning protocol. Prior to antibody application, wells were rinsed with deionized water several times. In the first step, a 100 μL of serum diluted 1:4 or 1:10 in ELISA Coating Buffer (BioLegend, San Diego, CA, USA) were applied per well and left overnight at 4°C. After antibody binding, wells were washed three times with ELISA coating buffer. Subsequently wells were incubated at 4°C overnight with 200 μL of 5% solution of blocking reagent provided with the kit. Following blocking, wells were washed 5 times with deionized water. Following washing wells were incubated with 1 × 108 pfu (plaque forming units) of each parent library in 100 μL of TBST (Tris-Buffered Saline with 0.05% Tween) overnight at 4°C. Subsequently unbound phages were removed by washing (5×) with TBST. To elute bound phages, wells were incubated with 200 μL of T7 phage elution buffer (0.1% SDS solution) at room temperature for 20 min. Eluted phages were amplified by inoculating 50 mL of host cells (fresh culture of BLT5403 strain in LB medium with cabenicillin, OD600 = 0.5-0.6) and incubation at 37°C with shaking until lysis of host cells was observed. The lysate was clarified by centrifugation at 8000 g for 10 minutes. The clarified extract was subjected to phage extraction using 12.5 mL of 20% PEG8000/2.5 M sodium chloride. Pelleted phages were re-suspended in 1 mL of STE buffer. Titer of purified phages was determined as derscribed above. The biopanning protocol was repeated four times to generate immuno-reactive biopanned libraries. To generate false positive controls, parent libraries were also biopanned with rabbit pre-immune serum as described above.
Next generation sequencing
Parent libraries (fed male, 24 and 96 h fed female libraries) and biopanned libraries were subjected to next generation sequencing using Illumina HiSeq2000 system with the following options: paired-end sequencing, read length of 100 bp, and 800,000 reads per sample. Libraries were prepared for sequencing by PCR amplification using AccuPrime Pfx DNA Polymerase (Invitrogen – Life Technologies, Carlsbad, CA, USA). 100 μL PCR reaction contained 2 μL of phages, 10 μL of 10× AccuPrime Pfx Reaction Mix, 3 μL of each T7Select UP and T7Select DOWN primer (10 μM), 1 μL of AccuPrime Pfx DNA Polymerase (2.5 units/μL), and 81 μL of nuclease free water. PCR cycling conditions were initial denaturation of 2 min at 95°C, followed by 35 cycles for 15 s at 95°C, 30s at 50°C, and 3 min at 68°C. Following amplification, PCR products were purified using MicroElute Cycle-Pure Kit (Omega Bio-Tek, Norcross, GA, USA). Elution was performed in 20 μL of Elution Buffer and samples were stored at −20°C until sequencing started.
De novoassembly and sequence analysis
Sequence reads trimmed at the default .05 limit value were de novo assembled using CLC Genomics Workbench software version 6.0.2 (CLC Bio-Qiagen, Cambridge, MA, USA), with all other parameters set to the default settings. Contigs that were found in pre-immune serum biopanned libraries were considered non-specific and eliminated from further analysis. To annotate assembled contigs, sequences were batch scanned against tick sequences in GenBank using BlastX homology search. The Blast search reported in this study was done during March 2014, and there is a possibility that findings may change when new sequences are deposited in GenBank. To identify contigs that were present in multiple biopanned libraries, contig lists were compared using the bl2seq pairwise alignment tool at NCBI. Multiple sequence alignments were done using MacVector version 12 (Mac Vector, Inc., Cary, NC, USA).
Results and discussion
Biopanning, next generation sequencing and de novoassembly
Three parent phage display cDNA expression libraries, 24 h (PL1) and 96 h (PL2) fed female and fed male (PL3) A. americanum ticks, were successfully immuno-screened with antibodies (Ab) to 24 and 48 h fed female tick saliva proteins to generate four biopanned libraries (BPs). The 4 BPs include PL1 biopanned with 24 h Ab (BP6) and 48 h Ab (BP10), PL2 biopanned with 48 h Ab (BP13-14), and PL3 biopanned with 48 h Ab (BP15-16) (Table 1). Biopanning PL1-3 with pre-immune control serum obtained from rabbits prior to tick infestation generated negative control BPs (N-BP1-3) (not shown). PCR amplified PLs, BPs, and N-BPs were successfully sequenced using Illumina HiSeq2000 and individually de novo assembled using CLC Genomics Workbench. As summarized in Table 1, biopanning of PL1 (5889 contigs) with Ab to 24 and 48 h A. americanum tick saliva proteins yielded 109 (BP6) and 117 (BP10) contigs, respectively. Likewise biopanning of PL2 (6240 contigs) and PL3 (5464 contigs) with antibodies to 48 h A. americanum tick saliva proteins yielded 419 (BP13-14) and 266 (BP15-16) contigs, respectively. BlastX analysis showed that all contigs in N-BPs and 16 contigs in biopanned libraries coded for phage proteins. This analysis identified 895 contigs that code putative immunogenic A. americanum tick saliva proteins secreted during the first 24-48 h of feeding. The strategy to immuno-screen with antibodies to 24 h A. americanum tick saliva proteins was to attempt finding proteins that are injected into the host within 24 h of tick feeding. Additionally immuno-screening male tick phage library identified immunogenic proteins that are shared between female and male ticks. Data in Table 2 show that 56% (60/109) of BP6 contigs were not found in other biopanned libraries, while ~20% (52/266) of BP15-16 contigs were also found in female tick biopanned libraries.
Table 1.
Sequence reads and contig numbers in parent (PL) and biopanned (BP) libraries
| Library name | Description | Number of sequence reads | Number of de novoassembled contigs |
|---|---|---|---|
| PL1 | 24 h fed female tick | 1.400.000 | 5889 |
| PL2 | 96 h fed female tick | 2.000.000 | 6240 |
| PL3 | Fed male tick | 1.700.000 | 5464 |
| BP6 | PL1 biopanned with antibodies to 24 h A. americanum TSP1 | 3.800.000 | 109 |
| BP10 | PL1 biopanned with antibodies to 48 h A. americanum TSP1 | 1.700.000 | 117 |
| BP13-14 | PL2 biopanned with antibodies to 48 h A. americanum TSP1 | 4.000.000 | 419 |
| BP15-16 | PL3 biopanned with antibodies to 48 h A. americanum TSP1 | 4.200.000 | 266 |
1Tick saliva proteins.
Table 2.
Amblyomma americanum tick saliva proteins encoding cDNAs conserved in other tick species, but not in mammals
| Accession# | Source library | Top matches in GenBank [accession#] | e-values |
|---|---|---|---|
| GBAI01000007 | BP6 | unknown larval protein mRNA, complete cds Rhipicephalus annulatus [EF675686.1] | 1e-124 |
| immunogenic protein mRNA, complete cds Haemaphysalis longicornis [GQ499841.1] | 5e-111 | ||
| secreted protein, putative, mRNA Ixodes scapularis [XP_002399589.1] | 6e-77 | ||
| Hq05 mRNA, complete cds Haemaphysalis qinghaiensis [AY626791.1] | 4e-70 | ||
| GBAJ01000081 | BP10 | unknown larval protein mRNA, complete cds Rhipicephalus annulatus [EF675686.1] | 1e-06 |
| immunogenic protein mRNA, complete cds Haemaphysalis longicornis [GQ499841.1] | 0.003 | ||
| GBAJ01000082 | BP10 | unknown larval protein mRNA, complete cds Rhipicephalus annulatus [EF675686.1] | 2e-09 |
| immunogenic protein mRNA, complete cds Haemaphysalis longicornis [GQ499841.1] | 7e-07 | ||
| GBAI01000013 | BP6 | mucin-like protein Dermacentor variabilis [ACF35532.1] | 4e-40 |
| salivary mucin Amblyomma variegatum [DAA34695.1] | 2e-24 | ||
| chitinase, putative Ixodes scapularis [XP_002404149.1] | 6e-22 | ||
| GBAK01000244 | BP13-14 | mucin-like protein Dermacentor variabilis [ACF35532.1] | 3e-41 |
| salivary mucin Amblyomma variegatum [DAA34695.1] | 5e-24 | ||
| chitinase, putative Ixodes scapularis [XP_002404149.1] | 4e-23 | ||
| GBAK01000411 | BP13-14 | Cht mRNA for chitinase, complete cds Haemaphysalis longicornis [AB074977.1] | 7e-12 |
| GBAI01000021 | BP6 | AV422 mRNA, complete cds Amblyomma americanum [KC222016.1] | 2e-08 |
| GBAK01000213 | BP13-14 | 6 | |
| GBAL01000042 | BP15-16 | 7e-35 | |
| GBAI01000030 | BP6 | hypothetical secreted protein 1447 mRNA, complete cds Amblyomma variegatum [BK007660.1] | 4e-09 |
| GBAI01000032 | BP6 | unknown Haemaphysalis qinghaiensis [ABQ96857.1] | 2e-11 |
| GBAJ01000049 | BP10 | 1e-11 | |
| GBAI01000033 | BP6 | conserved hypothetical protein Ixodes scapularis [XP_002404412.1] | 3e-07 |
| GBAI01000037 | BP6 | conserved protein 364 Amblyomma variegatum [DAA34231.1] | 2e-12 |
| GBAI01000051 | BP6 | hypothetical secreted protein 1652 Amblyomma variegatum [DAA34045.1] | 2e-45 |
| putative salivary secreted protein Ixodes scapularis [AAY66581.1] | 4e-45 | ||
| salivary protein antigen P23 Ixodes scapularis (AEE89467.1, 2e-38) | 1e-41 | ||
| secreted salivary gland peptide Ixodes scapularis [XP_002435217.1] | 2e-38 | ||
| GBAI01000092 | BP6 | conserved hypothetical protein, mRNA Ixodes scapularis [XM_002413966.1]1 | 5e-40 |
| GBAI01000096 | BP6 | conserved hypothetical protein Ixodes scapularis [XP_002414011.1] | 1e-80 |
| GBAI01000102 | BP6 | hypothetical protein Haemaphysalis longicornis [BAE02551.1] | 7e-07 |
| GBAK01000356 | BP13-14 | 3e-05 | |
| GBAI01000061 | BP6 | putative cement protein Amblyomma variegatum [BK007766.1] | 4e-04 |
| conserved hypothetical protein, mRNA Ixodes scapularis [XM_002400050.1] | 0.3 | ||
| GBAJ01000018 | BP10 | 0.36 | |
| GBAK01000332 | BP13-14 | 0.37 | |
| GBAL01000162 | BP15-16 | 0.091 | |
| GBAJ01000021 | BP10 | conserved hypothetical protein Ixodes scapularis [XP_002403158.1] | 2e-56 |
| GBAJ01000051 | BP10 | hypothetical protein IscW_ISCW013255 Ixodes scapularis [XM_002413442.1] | 6e-91 |
| GBAK01000272 | BP13-14 | putative cement protein Amblyomma variegatum [DAA34732.1] | 4e-12 |
| GBAJ01000077 | BP10 | 3e-04 | |
| GBAJ01000078 | BP10 | hypothetical protein Haemaphysalis longicornis [BAE02552.1] | 3e-10 |
| GBAJ01000079 | BP10 | 2e-08 | |
| GBAK01000069 | BP13-14 | 4e-08 | |
| GBAJ01000086 | BP10 | conserved hypothetical protein Ixodes scapularis [XP_002399913.1] | 3e-41 |
| GBAK01000083 | BP13-14 | secreted salivary gland peptide, putative Ixodes scapularis [XM_002412128.1] | 2e-18 |
| GBAJ01000091 | BP10 | 6e-22 | |
| GBAJ01000099 | BP10 | hypothetical secreted protein 123 mRNA, complete cds Amblyomma americanum [BK007643.1] | 1e-10 |
| GBAK01000035 | BP13-14 | hypothetical protein IscW_ISCW001430 Ixodes scapularis [XP_002401466.1] | 1e-04 |
| GBAK01000049 | BP13-14 | mucin peritrophin salivary protein Amblyomma variegatum [DAA34644.1] | 3e-05 |
| GBAK01000045 | BP13-14 | hypothetical protein IscW_ISCW000843 Ixodes scapularis [XP_00240030.1] | 3e-39 |
| GBAL01000114 | BP15-16 | 1e-48 | |
| GBAK01000058 | BP13-14 | Ixodes scapularis hypothetical protein, mRNA Ixodes scapularis [XM_002412067.1] | 4 e-21 |
| GBAK01000062 | BP13-14 | conserved hypothetical protein, mRNA Ixodes scapularis [XM_002411503.1] | 2e-27 |
| GBAK01000109 | BP13-14 | hypothetical protein IscW_ISCW011068 Ixodes scapularis [XP_002411440.1] | 9e-06 |
| GBAK01000119 | BP13-14 | conserved hypothetical protein Ixodes scapularis [XP_002416006.1] | 1e-08 |
| GBAK01000123 | BP13-14 | hypothetical protein, mRNA Ixodes scapularis [XM_002436116.1] | 3e-07 |
| GBAK01000138 | BP13-14 | hypothetical protein Haemaphysalis longicornis [BAE02708.1] | 8e-07 |
| GBAK01000161 | BP13-14 | hypothetical protein, mRNA Ixodes scapularis [XM_002400149.1] | 3e-07 |
| GBAK01000165 | BP13-14 | conserved hypothetical protein Ixodes scapularis [XP_002435325.1] | 1e-27 |
| GBAK01000185 | BP13-14 | hypothetical protein IscW_ISCW024828 Ixodes scapularis [XP_002416135.1] | 7e-06 |
| GBAK01000195 | BP13-14 | secreted PAPA repeat protein Amblyomma variegatum [DAA34610.1] | 1e-04 |
| hypothetical protein Ixodes scapularis [(XP_002433942.1] | 6e-07 | ||
| GBAK01000417 | BP13-14 | conserved hypothetical protein Ixodes scapularis [XP_002434340.1] | 1e-10 |
| GBAK01000238 | BP13-14 | conserved hypothetical protein Ixodes scapularis [XP_002403178.1] | 1e-118 |
| GBAK01000260 | BP13-14 | hypothetical secreted protein 94 Amblyomma variegatum [DAA34289.1] | 4e-08 |
| GBAK01000306 | BP13-14 | hypothetical protein IscW_ISCW024139 Ixodes scapularis [XP_002408992.1] | 9e-44 |
| GBAL01000156 | BP15-16 | 1e-37 | |
| GBAK01000322 | BP13-14 | conserved hypothetical protein Ixodes scapularis [XP_002399367.1] | 4e-61 |
| GBAK01000324 | BP13-14 | cuticle protein 10.9 Ixodes ricinus [P84251.1] | 1e-39 |
| secreted salivary gland peptide Ixoders scapularis [XP_002407787.1] | 2e-39 | ||
| GBAK01000338 | BP13-14 | conserved hypothetical protein Ixodes scapularis [XM_002412107.1] | 1e-77 |
| GBAK01000367 | BP13-14 | hypothetical protein IscW_ISCW001471 Ixodes scapularis [XM_002399258.1] | 1e-26 |
| GBAL01000163 | BP15-16 | 3e-41 | |
| GBAK01000374 | BP13-14 | hypothetical protein IscW_ISCW002509 Ixodes scapularis [XP_002403210.1] | 5e-15 |
| GBAK01000408 | BP13-14 | CDC73 protein, putative Ixodes scapularis [XP_002410866.1] | 3e-46 |
| GBAK01000350 | BP13-14 | conserved hypothetical protein Ixodes scapularis [XP_002400434.1]2 | 4e-61 |
| GBAK01000378 | BP13-14 | putative secreted salivary protein Ixodes scapularis [AAY66509.1] | 4e-09 |
| GBAL01000023 | BP15-16 | conserved hypothetical protein Ixodes scapularis [XM_002411217.1] | 6e-24 |
| GBAL01000028 | BP15-16 | conserved hypothetical protein Ixodes scapularis [XP_002404724.1] | 1e-27 |
| GBAL01000035 | BP15-16 | putative secreted salivary protein Ixodes scapularis [AAY6670.1] | 6e-17 |
| GBAL01000036 | BP15-16 | putative salivary secreted peptide Ixodes pacificus [AAT92118.1] | 8e-35 |
| secreted salivary gland peptide, putative Ixodes scapularis [XP_002433339.1] | 7e-34 | ||
| GBAL01000048 | BP15-16 | conserved hypothetical protein Ixodes scapularis [XM_002407819.1] | 1e-09 |
| GBAK01000098 | BP13-14 | 1e-09 | |
| GBAL01000057 | BP15-16 | conserved hypothetical protein Ixodes scapularis [XM_002409429.1] | 2e-09 |
| GBAL01000078 | BP15-16 | conserved hypothetical protein Ixodes scapularis [XM_002415769.1] | 0.008 |
| GBAL01000118 | BP15-16 | putative cement protein mRNA, complete cds Amblyomma variegatum [BK007766.1] | 6e-35 |
| GBAL01000126 | BP15-16 | conserved hypothetical protein Ixodes scapularis [XP_002406503.1] | 3e-74 |
| GBAL01000148 | BP15-16 | conserved hypothetical protein Ixodes scapularis [XP_002413922.1] | 2e-76 |
| GBAL01000168 | BP15-16 | clone HqL09 unknown mRNA Haemaphysalis qinghaiensis [EF605265.1] | 9e-19 |
| GBAL01000169 | BP15-16 | hypothetical protein IscW_ISCW007130 Ixodes scapularis [XP_002403722.1] | 3e-13 |
| GBAL01000181 | BP15-16 | ubiquitously expressed transcript (UXT), putative Ixodes scapularis [XP_002410385.1] | 5e-56 |
| GBAL01000185 | BP15-16 | conserved hypothetical protein Ixodes scapularis [XP_002400069.1] | 6e-05 |
| GBAL01000196 | BP15-16 | hypothetical protein IscW_ISCW011816 Ixodes scapularis [XP_002412243.1] | 2e-10 |
| GBAL01000210 | BP15-16 | secreted protein, putative Ixodes scapularis [XP_002401383.1] | 1e-27 |
| GBAL01000221 | BP15-16 | secreted salivary gland peptide, putative Ixodes scapularis [XP_002401305.1] | 1e-22 |
| GBAL01000247 | BP15-16 | hypothetical protein IscW_ISCW011424 Ixodes scapularis [XP_002412199.1] | 3e-16 |
| GBAL01000249 | BP15-16 | secreted salivary gland peptide, putative Ixodes scapularis [XP_002414543.1] | 4e-06 |
| GBAL01000252 | BP15-16 | secreted protein, putative Ixodes scapularis [XP_002408033.1] | 0.29 |
| glycine rich protein 44 Amblyomma variegatum [DAA34246.1] | 0.98 | ||
| GBAL01000253 | BP15-16 | 65-kDa macrophage protein, putative Ixodes scapularis [XP_002413054.1] | 2e-42 |
| GBAL01000255 | BP15-16 | conserved hypothetical protein Ixodes scapularis [XM_002433956.1] | 3e-42 |
| GBAL01000260 | BP15-16 | conserved hypothetical protein Ixodes scapularis [XM_002435514.1] | 1e-36 |
1show conservation in mammals.
2highly identical to apoptosis response protein.
Of the 895 contigs from the A. americanum immuno-transcriptome, 431 (listed in an Additional file 1) did not show amino acid identities to previously annotated proteins in GenBank, while the remaining 464 sequences were provisionally annotated on the basis of their identity to protein sequences in GenBank. The provisionally annotated sequences include cross-tick species conserved orphan tick saliva proteins (Table 2), proteases (Table 3), protease inhibitors (Table 4), transporters and/or binding proteins (Table 5), enzymes (Table 6), ribosomal proteins (Table 7), and proteins of miscellaneous functions (Table 8). For clarity, the rest of this discussion is arranged under the different classes of provisionally identified proteins in this study.
Table 3.
Putative proteases in Amblyomma americanum tick saliva
| Accession# | Source library | Top matches in GenBank [accession#] | e-values |
|---|---|---|---|
| GBAK01000372 | BP13-14 | putative legumain-like protease precursor Dermacentor variabilis [ACF35522.1] | 3e-47 |
| GBAI01000003 | BP6 | protease, putative Ixodes scapularis [XP_002413749.1] | 4e-40 |
| leukotriene hydrolase Argas monolakensis [ABI52802.1] | 4e-32 | ||
| GBAJ01000102 | BP10 | protease, putative Ixodes scapularis [XP_002413749.1] | 2e-26 |
| leukotriene hydrolase Argas monolakensis [ABI52802.1] | 3e-21 | ||
| GBAK01000094 | BP13-14 | putative cathepsin B-like cysteine protease form 1 Dermacentor variabilis [ACF35525.1] | 5e-60 |
| cathepsin B-like cysteine protease form 1 Ixodes ricinus [ABO26563.1] | 3e-56 | ||
| GBAI01000024 | BP6 | cathepsin L-like cysteine proteinase A Rhipicephalus haemaphysaloides haemaphysaloides [AAQ16117.1] | 3e-14 |
| GBAJ01000008 | BP10 | 2e-82 | |
| GBAK01000180 | BP13-14 | 3e-28 | |
| GBAK01000182 | BP13-14 | Longipain Haemaphysalis longicornis [BAF43801.1] | 4e-55 |
| GBAK01000183 | BP13-14 | 7e-41 | |
| GBAK01000214 | BP13-14 | conserved hypothetical protein Ixodes scapularis [XP_002414190.1] | 7e-15 |
| serine carboxypeptidase, putative Ixodes scapularis [XP_002403464.1] | 2e-12 | ||
| GBAL01000134 | BP15-16 | conserved hypothetical protein Ixodes scapularis [XP_002414190.1] | 2e-13 |
| serine carboxypeptidase, putative Ixodes scapularis [XP_002414193.1] | 8e-11 | ||
| GBAJ01000040 | BP10 | serine carboxypeptidase, putative Ixodes scapularis [XP_002403464.1] | 2e-14 |
| GBAK01000358 | BP13-14 | angiotensin-converting enzyme, putative Ixodes scapularis [XP_002401260.1] | 2e-40 |
| GBAK01000026 | BP13-14 | neprilysin, putative Ixodes scapularis [XP_002404392.1] | 1e-42 |
| GBAK01000196 | BP13-14 | neprilysin, putative Ixodes scapularis [XP_002414107.1] | 1e-05 |
| GBAK01000111 | BP13-14 | metallopeptidase Amblyomma variegatum [DAA34047.1] | 4e-81 |
| GBAK01000132 | BP13-14 | metalloprotease Haemaphysalis longicornis [BAE72664.1] | 3e-06 |
| metalloprotease, putative Ixodes scapularis [XP_002407430.1] | 4e-06 | ||
| metalloprotease Argas monolakensis [ABI52779.1] | 3e-04 | ||
| GBAK01000269 | BP13-14 | ubiquitin fusion-degradation protein, putative Ixodes scapularis [XP_002414671.1] | 5e-62 |
Table 4.
Putative protease inhibitors in Amblyomma americanum tick saliva
| Accession# | Source library | Top matches in GenBank [accession#] | e-values |
|---|---|---|---|
| GBAI01000043 | BP6 | neutrophil elastase inhibitor Rhipicephalus microplus [ABH10604.1] | 2e-14 |
| GBAI01000058 | BP6 | 3e-07 | |
| GBAJ01000027 | BP10 | 2e-14 | |
| GBAL01000059 | BP15-16 | 9e-11 | |
| GBAK01000097 | BP13-14 | hypothetical protein Haemaphysalis longicornis [BAE02553.1] | 2e-12 |
| GBAL01000201 | BP15-16 | 3e-12 | |
| GBAK01000040 | BP13-14 | Chymotrypsin-elastase inhibitor ixodidin Rhipicephalus microplus [P83516] | 2e-06 |
| GBAJ01000043 | BP10 | Kunitz-like protease inhibitor precursor Amblyomma variegatum [DAA34606.1] | 2e-29 |
| GBAK01000277 | BP13-14 | putative salivary protein with Kunitz domains Ixodes scapularis [AAY66736.1] | 4e-04 |
| GBAJ01000023 | BP10 | putative Kunitz-BPTI protein Dermacentor variabilis [ACF35511.1] | 1e-13 |
| GBAK01000091 | BP13-14 | 2e-13 | |
| GBAK01000073 | BP13-14 | Carboxypeptidase inhibitor Rhipicephalus bursa [Q5EPH2.1] | 3e-33 |
| GBAJ01000071 | BP10 | ATPase inhibitor, putative Ixodes scapularis [XP_002399280.1] | 5e-29 |
| GBAK01000345 | BP13-14 | 9e-26 | |
| GBAK01000027 | BP13-14 | translation initiation inhibitor UK114/IBM1, putative Ixodes scapularis [XP_002434004.1] | 2e-12 |
| GBAL01000098 | BP15-16 | 2e-12 | |
| GBAK01000064 | BP13-14 | cystatin Haemaphysalis longicornis [ABZ89554.1] | 2e-63 |
| cystatin Dermacentor silvarum [ADZ23478.1] | 4e-62 | ||
| cystatin 2c Rhipicephalus microplus [AGW80659.1] | 1e-59 | ||
| GBAL01000180 | BP15-16 | cystatin 2b Rhipicephalus microplus [AGW80658.1] | 3e-51 |
| gut cystatin Rhipicephalus appendiculatus [AGB35873.1] | 3e-51 | ||
| putative secreted cystatin Dermacentor variabilis [ACF35514.1] | 3e-36 | ||
| GBAL01000013 | BP15-16 | cystatin Haemaphysalis longicornis [ABV71390.1] | 8e-14 |
Table 5.
Putative immunogenic binding proteins and transporters present in Amblyomma americanum tick saliva
| Accession# | Source library | Top matches in GenBank [accession#] | e-values |
|---|---|---|---|
| GBAJ01000035 | BP10 | hemelipoglycoprotein precursor, mRNA, complete cds Dermacentor variabilis [DQ422963.1] | 0.085 |
| GBAL01000006 | BP15-16 | heme lipoprotein precursor, mRNA, complete cds Amblyomma americanum [EF050790.3] | 0.43 |
| GBAK01000315 | BP13-14 | 4e-50 | |
| GBAI01000078 | BP6 | ferritin Amblyomma americanum [AAQ54708.1] | 7e-79 |
| GBAJ01000036 | BP10 | 3e-61 | |
| GBAJ01000098 | BP10 | 2e-45 | |
| GBAK01000211 | BP13-14 | 3e-96 | |
| GBAL01000165 | BP15-16 | 1e-37 | |
| GBAJ01000019 | BP10 | ferritin Haemaphysalis longicornis [AAQ54713.1] | 2e-17 |
| GBAI01000083 | BP6 | calmodulin, putative Ixodes scapularis [XP_002404770.1] | 3e-53 |
| GBAJ01000110 | BP10 | 7e-68 | |
| GBAK01000031 | BP13-14 | 7e-78 | |
| GBAL01000053 | BP15-16 | 1e-77 | |
| GBAJ01000101 | BP10 | calreticulin (crt-1) mRNA, complete cds Amblyomma americanum [U07708.1] | 3e-10 |
| GBAK01000025 | BP13-14 | 7e-25 | |
| GBAI01000101 | BP6 | calponin, putative Ixodes scapularis [XP_002402437.1] | 1e-56 |
| GBAL01000044 | BP15-16 | sarcoplasmic calcium-binding proteins I, III, and IV, putative Ixodes scapularis [XP_002434211.1] | 1e-04 |
| GBAK01000066 | BP13-14 | lipocalin Argas monolakensis [ABI152816.1] | 0.002 |
| GBAK01000093 | BP13-14 | salivary lipocalin Amblyomma variegatum [DAA34666.1] | 3e-06 |
| GBAL01000248 | BP15-16 | 1e-07 | |
| GBAI01000035 | BP6 | salivary lipocalin Amblyomma variegatum [DAA34698.1] | 9e-30 |
| GBAK01000144 | BP13-14 | 2e-05 | |
| GBAL01000122 | BP15-16 | 4e-04 | |
| GBAK01000151 | BP13-14 | serotonin and histamine binding protein Dermacentor reticulatus [AAL56644.1] | 7e-19 |
| GBAL01000133 | BP15-16 | lipocalin Argas monolakensis [ABI52807.1] | 6e-10 |
| GBAJ01000056 | BP10 | fatty acid-binding protein FABP Amblyomma variegatum [DAA34565.1] | 3e-06 |
| GBAL01000186 | BP15-16 | ATP binding protein, putative Ixodes scapularis [XP_002399785.1] | 0.49 |
| GBAK01000068 | BP13-14 | GTP-binding protein, putative Ixodes scapularis [XP_002412036.1] | 1e-07 |
| GBAJ01000103 | BP10 | histidine triad (hit) protein, putative Ixodes scapularis [XP_002412911.1] | 6e-48 |
| GBAL01000222 | BP15-16 | RNA-binding protein, putative Ixodes scapularis [XP_002410612.1]1 | 2.1 |
| GBAL01000072 | BP15-16 | RNA-binding nuclear protein, putative Ixodes scapularis [XP_002413820.1] | 6e-10 |
| GBAL01000055 | BP15-16 | RNA recognition motif protein, putative Ixodes scapularis [XP_002411413.1] | 2e-36 |
| GBAK01000395 | BP13-14 | DNA-binding protein C1D Amblyomma variegatum [DAA34443.1] | 2e-31 |
| sun-cor steroid hormone receptor co-repressor, putative Ixodes scapularis [XP_002402463.1] | 4e-26 | ||
| GBAK01000082 | BP13-14 | immunoglobulin G binding protein A Rhipicephalus appendiculatus [AAB68801.1] | 3e-58 |
| GBAK01000159 | BP13-14 | 9e-10 | |
| GBAK01000246 | BP13-14 | insulin-like growth factor binding protein-related protein 6 long mRNA, complete cds Amblyomma americanum [GU907779.1] | 1e-49 |
| insulin-like growth factor binding protein-related protein 6 short mRNA, complete cds Amblyomma americanum [GU907778.1] | 5e-46 | ||
| GBAL01000113 | BP15-16 | Evasin-1 Rhipicephalus sanguineus [E0C8P7.1] | 6e-08 |
| GBAL01000188 | BP15-16 | actin-binding protein Sla2, putative Ixodes scapularis [XP_002434768.1] | 2e-74 |
| GBAK01000236 | BP13-14 | cyclophilin A Haemaphysalis longicornis [BAG41813.1] | 4e-81 |
| GBAL01000024 | BP15-16 | 4e-81 | |
| GBAK01000404 | BP13-14 | monocarboxylate transporter, putative Ixodes scapularis [XP_002435530.1] | 0.003 |
| GBAL01000241 | BP15-16 | phosphatidylcholine transfer protein, putative Ixodes scapularis [XP_002408227.1] | 4e-43 |
| GBAK01000116 | BP13-14 | translocon-associated complex TRAP, alpha subunit, putative Ixodes scapularis [XP_002413372.1] | 2.2 |
| GBAL01000016 | BP15-16 | trafficking protein particle complex subunit 6B, putative Ixodes scapularis [XP_002402611.1] | 8e-54 |
| GBAK01000379 | BP13-14 | 9e-54 |
1contain G patch domain.
Table 6.
Putative immunogenic enzymes in Amblyomma americanum tick saliva
| Accession# | Source library | Top matches in GenBank [accession#] | e-values |
|---|---|---|---|
| GBAI01000009 | BP6 | FoF1 ATPase subunit6 Amblyomma americanum [ABA19091.1] | 9e-57 |
| GBAJ01000009 | BP10 | F1F0 ATP-synthase subunit Cf6, putative Ixodes scapularis [XP_002399676.1] | 8e-55 |
| GBAI01000048 | BP6 | 7e-46 | |
| GBAK01000355 | BP13-14 | vacuolar H + −ATPase V1 sector, subunit G, putative Ixodes scapularis [XP_002415521.1] | 1e-43 |
| GBAK01000200 | BP13-14 | ADP/ATP translocase Ixodes scapularis [AAY66969.1] | 9e-19 |
| GBAK01000110 | BP13-14 | inner mitochondrial membrane translocase TIM17-like protein, partial Ixodes scapularis [AAY66838.1] | 5e-40 |
| GBAK01000320 | BP13-14 | mitochondrial malate dehydrogenase, partial Ixodes scapularis [AAY66975.1] | 3e-34 |
| GBAI01000028 | BP6 | C1-tetrahydrofolate synthase, putative Ixodes scapularis [XP_002401635.1] | 2e-39 |
| GBAK01000202 | BP13-14 | cytochrome oxidase subunit 1 Amblyomma americanum [ABA19092.1] | 4e-74 |
| GBAL01000140 | BP15-16 | 5e-43 | |
| GBAI01000098 | BP6 | COX1 gene product (mitochondrion) Bothriocroton concolor [YP_006234392.1] | 9e-47 |
| GBAI01000099 | BP6 | cytochrome c oxidase subunit I Rhipicephalus zambeziensis [AAG23880.1] | 2e-40 |
| GBAK01000263 | BP13-14 | cytochrome c oxidase subunit I Amblyomma limbatum [ACM17834.1] | 1e-59 |
| GBAL01000112 | BP15-16 | cytochrome oxidase subunit 1 Ixodes scapularis [ADO64507.1] | 6e-55 |
| GBAL01000084 | BP15-16 | cytochrome c oxidase subunit I Rhipicephalus maculatus [AAG23878.1] | 4e-25 |
| GBAL01000143 | BP15-16 | cytochrome oxidase subunit 2 Amblyomma americanum [ABA19093.1] | 2e-42 |
| GBAK01000067 | BP13-14 | 3e-70 | |
| GBAK01000121 | BP13-14 | cytochrome oxidase subunit 3 Amblyomma americanum [ABA19094.1] | 1e-68 |
| GBAL01000031 | BP15-16 | 9e-69 | |
| GBAK01000343 | BP13-14 | cytochrome c oxidase polypeptide IV Ixodes scapularis [AAY66918.1] | 3e-55 |
| GBAK01000282 | BP13-14 | cytochrome c oxidase polypeptide Vb Ixodes scapularis [AAY66932.1] | 2e-37 |
| GBAJ01000050 | BP10 | cytochrome C oxidase, subunit VIb/COX12, putative Ixodes scapularis [XP_002416556.1] | 1e-07 |
| GBAK01000008 | BP13-14 | cytochrome oxidase subunit VIIc Ixodes pacificus [AAT92215.1] | 2e-32 |
| GBAJ01000041 | BP10 | ubiquinol cytochrome c reductase subunit QCR7 Amblyomma variegatum [DAA34591.1] | 7e-52 |
| GBAK01000326 | BP13-14 | 4e-47 | |
| GBAJ01000024 | BP10 | NADH:ubiquinone oxidoreductase, NDUFS2/49 kDa subunit, putative Ixodes scapularis [XP_002404495.1] | 3e-82 |
| GBAJ01000104 | BP10 | NADH-ubiquinone oxidoreductase ashi subunit, putative Ixodes scapularis [XP_002409125.1] | 2e-08 |
| GBAK01000386 | BP13-14 | estradiol 17-beta-dehydrogenase, putative Ixodes scapularis [XP_002434666.1] | 5e-33 |
| GBAL01000014 | BP15-16 | NADH dehydrogenase subunit 1 (mitochondrion) Amblyomma cajennense [YP_007475022.1] | 3e-40 |
| GBAK01000139 | BP13-14 | NADH dehydrogenase subunit 2 Amblyomma americanum [ABA19096.1] | 3e-10 |
| GBAK01000133 | BP13-14 | NADH dehydrogenase subunit 3 (mitochondrion) Amblyomma cajennense [YP_007475021.1] | 5e-27 |
| GBAL01000089 | BP15-16 | NADH dehydrogenase subunit 4 Amblyomma americanum [ABA19099.1] | 3e-33 |
| GBAI01000088 | BP6 | alkyl hydroperoxide reductase, thiol specific antioxidant, putative Ixodes scapularis [XP_002405466.1] | 2e-42 |
| thioredoxin peroxidase Ornithodoros parkeri [ABR23404.1] | 1e-41 | ||
| GBAL01000174 | BP15-16 | peroxidase, putative Ixodes scapularis [XP_002404935.1] | 1e-34 |
| GBAL01000029 | BP15-16 | thioredoxin reductase, putative Ixodes scapularis [XP_002404402.1] | 1e-68 |
| GBAI01000050 | BP6 | putative glutathione S-transferase Dermacentor variabilis [ACF35539.1] | 4e-94 |
| GBAK01000166 | BP13-14 | 7e-105 | |
| GBAL01000121 | BP15-16 | 7e-67 | |
| GBAL01000175 | BP15-16 | 1e-32 | |
| GBAK01000413 | BP13-14 | putative glutathione S-transferase Dermacentor variabilis [ACF35505.1] | 9e-32 |
| GBAK01000042 | BP13-14 | gamma-glutamyltransferase, putative Ixodes scapularis [XP_002407102.1] | 0.006 |
| GBAL01000137 | BP15-16 | 0.006 | |
| GBAL01000157 | BP15-16 | protein disulfide isomerase Amblyomma variegatum [ABD16189.1] | 0 |
| GBAK01000105 | BP13-14 | 0 | |
| GBAK01000289 | BP13-14 | protein disulfide isomerase Amblyomma variegatum [DAA34067.1] | 4e-57 |
| GBAI01000054 | BP6 | protein disulfide isomerase Haemaphysalis longicornis [ABS50238.1] | 1e-24 |
| GBAI01000015 | BP6 | protein disulfide isomerase-1 Haemaphysalis longicornis [BAF63672.1] | 9e-04 |
| GBAK01000337 | BP13-14 | protein disulfide isomerase-2 Haemaphysalis longicornis [BAF63671.1] | 3e-39 |
| GBAI01000074 | BP6 | sulfotransferase, putative Ixodes scapularis [XP_002435996.1] | 9e-14 |
| GBAJ01000030 | BP10 | 3e-19 | |
| GBAL01000144 | BP15-16 | 0.033 | |
| GBAJ01000034 | BP10 | sulfotransferase, putative Ixodes scapularis [XP_002436296.1] | 7e-14 |
| GBAL01000136 | BP15-16 | sulfotransferase, putative Ixodes scapularis [XP_002400534.1] | 3e-35 |
| GBAK01000319 | BP13-14 | glycosyl transferase, putative Ixodes scapularis [XP_002434372.1] | 2e-31 |
| GBAK01000388 | BP13-14 | 1e-38 | |
| GBAK01000266 | BP13-14 | acyl-CoA synthetase, putative Ixodes scapularis [XP_002401840.1] | 2e-31 |
| GBAK01000079 | BP13-14 | adenylosuccinate lyase, putative Ixodes scapularis [XP_002399354.1] | 4e-34 |
| GBAK01000191 | BP13-14 | casein kinase, putative Ixodes scapularis [XP_002400161.1] | 2e-30 |
| GBAL01000108 | BP15-16 | 1e-30 | |
| GBAK01000072 | BP13-14 | 3-hydroxyacyl-CoA dehydrogenase, putative Ixodes scapularis [XP_002415080.1] | 1e-79 |
| GBAI01000093 | BP6 | malonyl CoA-acyl carrier protein transacylase, putative Ixodes scapularis [XP_002402213.1] | 5e-15 |
| GBAI01000059 | BP6 | dihydrolipoamide acetyltransferase, putative Ixodes scapularis [XP_002401656.1] | 8e-05 |
| GBAJ01000090 | BP10 | RAB GTPase-activating protein, putative Ixodes scapularis [XP_002407414.1] | 2e-29 |
| GTPase-activating protein Amblyomma variegatum [DAA34545.1] | 3e-27 | ||
| GBAK01000234 | BP13-14 | ubiquitin protein ligase Ixodes scapularis [XP_002434331.1] | 2e-28 |
| GBAI01000014 | BP6 | SCF ubiquitin ligase Skp1 component Amblyomma variegatum [DAA34559.1] | 2e-46 |
| SCF ubiquitin ligase complex Ixodes scapularis [AAY66893.1] | 2e-46 | ||
| GBAK01000329 | BP13-14 | phosphoribosylformylglycinamidine synthase, putative Ixodes scapularis [XP_002405859.1] | 2e-35 |
| GBAK01000254 | BP13-14 | lysine-ketoglutarate reductase/saccharopine dehydrogenase Haemaphysalis longicornis [BAI44335.1] | 6e-77 |
| lysine-ketoglutarate reductase, putative Ixodes scapularis [XP_002404033.1] | 3e-70 | ||
| GBAK01000268 | BP13-14 | pterin-4-alpha-carbinolamine dehydratase, putative Ixodes scapularis [XP_002399841.1] | 1e-56 |
| GBAK01000157 | BP13-14 | ornithine aminotransferase, putative Ixodes scapularis [XP_002406120.1] | 2e-45 |
| GBAI01000082 | BP6 | methionyl-tRNA synthetase, putative Ixodes scapularis [XP_002433760.1] | 6e-32 |
| GBAK01000365 | BP13-14 | aspartyl-tRNA synthetase, putative Ixodes scapularis [XP_002404413.1] | 6e-39 |
| GBAL01000251 | BP15-16 | cysteine synthase, putative Ixodes scapularis [XP_002415219.1] | 3e-39 |
| GBAL01000103 | BP15-16 | ng,ng-dimethylarginine dimethylaminohydrolase, putative, mRNA Ixodes scapularis [XM_002404864.1] | 1e-05 |
| GBAL01000038 | BP15-16 | keratinocyte transglutaminase, putative Ixodes scapularis [XP_002402412.1] | 3e-46 |
| GBAK01000354 | BP13-14 | 2e-36 | |
| GBAK01000325 | BP13-14 | lysosomal acid phosphatase Haemaphysalis longicornis [ADN34299.1] | 9e-66 |
| GBAJ01000044 | BP10 | triosephosphate isomerase Rhipicephalus microplus [AFP81689.1] | 8e-103 |
| GBAL01000080 | BP15-16 | phosphoenolpyruvate carboxykinase Rhipicephalus microplus [ABO61883.1] | 2e-36 |
| phosphoenolpyruvate carboxykinase, putative Ixodes scapularis [XP_002404833.1] | 1e-32 | ||
| GBAK01000024 | BP13-14 | D-dopachrome tautomerase, putative Ixodes scapularis [XP_002401879.1] | 2e-10 |
| GBAJ01000109 | BP10 | transposase, putative Ixodes scapularis [XP_002415790.1] | 8e-19 |
| GBAI01000002 | BP6 | ribosomal protein S6 kinase, putative Ixodes scapularis [XP_002405308.1] | 3e-21 |
Table 7.
Ribosomal proteins in Amblyomma americanum tick saliva
| Accession# | Source library | Top matches in GenBank [accession#] | e-values |
|---|---|---|---|
| GBAI01000031 | BP6 | ribosomal protein Haemaphysalis qinghaiensis [ACD50888.1] | 2e-37 |
| ribosomal protein, putative Ixodes scapularis [XP_002400902.1] | 1e-34 | ||
| ribosomal protein, large P2 Ixodes pacificus [AAT92169.1] | 3e-34 | ||
| GBAK01000179 | BP13-14 | ribosomal protein Haemaphysalis qinghaiensis [ACD50888.1] | 2e-39 |
| ribosomal protein, putative Ixodes scapularis [XP_002400902.1] | 3e-34 | ||
| ribosomal protein, large P2 Ixodes pacificus [AAT92169.1] | 7e-34 | ||
| GBAI01000107 | BP6 | 60S ribosomal protein L2/L8 Ornithodoros coriaceus [ACB70396.1] | 2e-63 |
| GBAK01000392 | BP13-14 | 1e-52 | |
| GBAI01000079 | BP6 | ribosomal protein L3, putative Ixodes scapularis [XP_002416193.1] | 6e-73 |
| GBAJ01000010 | BP10 | 2e-72 | |
| GBAK01000172 | BP13-14 | 5e-87 | |
| GBAL01000021 | BP15-16 | 2e-88 | |
| GBAL01000022 | BP15-16 | 1e-36 | |
| GBAL01000146 | BP15-16 | 2e-10 | |
| GBAI01000049 | BP6 | 60S ribosomal protein L5, putative Ixodes scapularis [XP_002434050.1] | 1e-23 |
| GBAJ01000073 | BP10 | 60S ribosomal protein L9, putative Ixodes scapularis [XP_002407167.1] | 4e-118 |
| GBAK01000059 | BP13-14 | 3e-48 | |
| GBAK01000198 | BP13-14 | ribosomal protein L9, putative Ixodes scapularis [XP_002433785.1] | 2e-10 |
| GBAJ01000084 | BP10 | 60S ribosomal protein L10a Ixodes scapularis [AAY66960.1] | 6e-41 |
| GBAK01000385 | BP13-14 | 1e-54 | |
| GBAL01000009 | BP15-16 | 60S ribosomal protein L10A, putative Ixodes scapularis [XP_002404773.1] | 3e-135 |
| GBAJ01000105 | BP10 | 60S ribosomal protein L10, putative Ixodes scapularis [XP_002399224.1] | 2e-56 |
| GBAI01000057 | BP6 | ribosomal protein L11, putative Ixodes scapularis [XP_002409414.1] | 2e-92 |
| GBAK01000020 | BP13-14 | 3e-125 | |
| GBAJ01000028 | BP10 | ribosomal protein L12 Dermacentor variabilis [ACF35542.1] | 1e-102 |
| GBAK01000299 | BP13-14 | putative 60S ribosomal protein L13a Amblyomma maculatum [ADC97464.1] | 2e-129 |
| GBAJ01000052 | BP10 | putative 60S ribosomal protein L13e Amblyomma americanum [ADC97461.1] | 2e-97 |
| GBAK01000188 | BP13-14 | 60S ribosomal protein L14, putative Ixodes scapularis [XP_002403086.1] | 4e-19 |
| GBAL01000051 | BP15-16 | ribosomal protein L15, putative Ixodes scapularis [XP_002402071.1] | 8e-51 |
| GBAI01000047 | BP6 | ribosomal protein L17, putative Ixodes scapularis [XP_002435561.1] | 7e-100 |
| GBAJ01000080 | BP10 | 60S ribosomal protein L17 Ixodes scapularis [Q4PM54.1] | 2e-30 |
| GBAK01000155 | BP13-14 | 7e-48 | |
| GBAI01000036 | BP6 | ribosomal protein L18a Ixodes scapularis [AAY66898.1] | 1e-115 |
| GBAK01000375 | BP13-14 | 1e-32 | |
| GBAI01000086 | BP6 | ribosomal protein L19 Ixodes scapularis [AAY66930.1] | 3e-10 |
| GBAK01000273 | BP13-14 | 3e-10 | |
| GBAI01000052 | BP6 | ribosomal protein L21, putative Ixodes scapularis [XP_002403588.1] | 3e-87 |
| GBAJ01000002 | BP10 | 1e-104 | |
| GBAK01000009 | BP13-14 | 8e-105 | |
| GBAL01000033 | BP15-16 | 3e-44 | |
| GBAI01000065 | BP6 | ribosomal protein L22, putative Ixodes scapularis [XP_002412444.1] | 5e-47 |
| GBAJ01000088 | BP10 | ribosomal protein L23 Haemaphysalis qinghaiensis [AAY42210.1] | 7e-69 |
| GBAK01000232 | BP13-14 | 3e-29 | |
| GBAL01000079 | BP15-16 | 60S ribosomal protein L23 Ixodes scapularis [AAY66949.1] | 3e-45 |
| GBAK01000114 | BP13-14 | 60S ribosomal protein L24, putative Ixodes scapularis [XP_002409587] | 2e-32 |
| GBAI01000006 | BP6 | ribosomal protein L26 Ixodes scapularis [AAY66956.1] | 6e-62 |
| GBAI01000053 | BP6 | ribosomal protein L27A, putative Ixodes scapularis [XP_002411588.1] | 3e-72 |
| GBAJ01000076 | BP10 | 8e-74 | |
| GBAJ01000039 | BP10 | 60S ribosomal protein L27, putative Ixodes scapularis [XP_002434022.1] | 2e-81 |
| GBAK01000327 | BP13-14 | 1e-57 | |
| GBAI01000089 | BP6 | ribosomal protein L28, putative Ixodes scapularis [XP_002406865.1] | 2e-40 |
| GBAJ01000094 | BP10 | 3e-39 | |
| GBAK01000004 | BP13-14 | 4e-19 | |
| GBAL01000085 | BP15-16 | 6e-40 | |
| GBAI01000022 | BP6 | 60S ribosomal protein L29 Ornithodoros parkeri [ABR23378.1] | 9e-27 |
| GBAJ01000054 | BP10 | 5e-27 | |
| GBAK01000235 | BP13-14 | 4e-27 | |
| GBAL01000073 | BP15-16 | 9e-27 | |
| GBAI01000080 | BP6 | ribosomal protein L30 Ixodes pacificus [AAT92174.1] | 2e-77 |
| GBAK01000061 | BP13-14 | 6e-72 | |
| GBAI01000026 | BP6 | ribosomal protein L31, putative Ixodes scapularis [XP_002403582.1] | 5e-26 |
| ribosomal protein L31 Dermacentor variabilis [ACF35537.1] | 6e-25 | ||
| ribosomal protein L31 Argas monolakensis [ABI52770.1] | 1e-23 | ||
| GBAK01000248 | BP13-14 | ribosomal protein L31, putative Ixodes scapularis [XP_002403582.1] | 9e-15 |
| ribosomal protein L31 Dermacentor variabilis [ACF35537.1] | 2e-15 | ||
| ribosomal protein L31 Argas monolakensis [ABI52770.1] | 3e-15 | ||
| GBAK01000249 | BP13-14 | ribosomal protein L31, putative Ixodes scapularis [XP_002403582.1] | 2e-54 |
| ribosomal protein L31 Dermacentor variabilis [ACF35537.1] | 1e-57 | ||
| ribosomal protein L31 Argas monolakensis [ABI52770.1] | 2e-54 | ||
| GBAL01000017 | BP15-16 | ribosomal protein L31, putative Ixodes scapularis [XP_002403582.1] | 1e-68 |
| ribosomal protein L31 Dermacentor variabilis [ACF35537.1] | 5e-72 | ||
| ribosomal protein L31 Argas monolakensis [ABI52770.1] | 1e-68 | ||
| GBAI01000075 | BP6 | 60S ribosomal protein L32, putative Ixodes scapularis [XP_002399507.1] | 2e-47 |
| GBAK01000076 | BP13-14 | 9e-57 | |
| GBAL01000139 | BP15-16 | 4e-56 | |
| GBAL01000177 | BP15-16 | 7e-25 | |
| GBAI01000067 | BP6 | ribosomal protein L34 Dermacentor variabilis [ACF35536.1] | 9e-60 |
| GBAJ01000005 | BP10 | 1e-78 | |
| GBAJ01000007 | BP10 | 7e-74 | |
| GBAL01000158 | BP15-16 | 4e-59 | |
| GBAK01000216 | BP13-14 | 60s ribosomal protein L34 Ornithodoros parkeri [ABR23475.1] | 0.079 |
| GBAI01000084 | BP6 | 60S ribosomal protein L35-like protein Dermacentor variabilis [ACF35541.1] | 1e-50 |
| GBAJ01000065 | BP10 | 1e-56 | |
| GBAL01000099 | BP15-16 | 4e-62 | |
| GBAI01000104 | BP6 | ribosomal protein L35a Ixodes scapularis [AAY66948.1] | 4e-54 |
| GBAK01000296 | BP13-14 | 4e-66 | |
| GBAK01000203 | BP13-14 | ribosomal protein L37A Ornithodoros parkeri [ABR23427.1] | 6e-58 |
| ribosomal protein L37A Ixodes scapularis [AAY66836.1] | 6e-58 | ||
| GBAI01000108 | BP6 | 60S ribosomal protein L37 Ixodes scapularis [AAY66940.1] | 5e-41 |
| GBAJ01000022 | BP10 | 2e-43 | |
| GBAK01000262 | BP13-14 | 7e-20 | |
| GBAK01000291 | BP13-14 | ribosomal protein L39 Ixodes scapularis [AAY66991.1] | 8e-30 |
| GBAK01000220 | BP13-14 | ribosomal protein L40, putative Ixodes scapularis [XP_002401964.1] | 6e-60 |
| GBAI01000044 | BP6 | 60S ribosomal protein L44 Ornithodoros parkeri [ABR23416.1] | 1e-54 |
| GBAJ01000037 | BP10 | 1e-47 | |
| GBAK01000071 | BP13-14 | 1e-69 | |
| GBAI01000068 | BP6 | 40S ribosomal protein S2/30S Ornithodoros parkeri [ABR23354.1] | 2e-46 |
| 40S ribosomal protein, putative Ixodes scapularis [XP_002400781.1] | 6e-46 | ||
| GBAL01000191 | BP15-16 | 40S ribosomal protein S2/30S Ornithodoros parkeri [ABR23354.1] | 2e-58 |
| 40S ribosomal protein, putative Ixodes scapularis [XP_002400781.1] | 4e-59 | ||
| GBAI01000001 | BP6 | 40S ribosomal protein S3 Ornithodoros parkeri [ABR23477.1] | 4e-36 |
| GBAJ01000042 | BP10 | 2e-36 | |
| GBAK01000305 | BP13-14 | 2e-53 | |
| GBAK01000100 | BP13-14 | 40S ribosomal protein S3a Amblyomma variegatum [DAA34106.1] | 3e-92 |
| GBAK01000101 | BP13-14 | 40S ribosomal protein S3a Argas monolakensis [ABI52667.1] | 8e-28 |
| GBAL01000166 | BP15-16 | 5e-35 | |
| GBAK01000303 | BP13-14 | ribosomal protein S4 Ornithodoros parkeri [ABR23501.1] | 2e-50 |
| GBAL01000235 | BP15-16 | 40S ribosomal protein S4 Ixodes scapularis [Q4PMB3.1] | 6e-78 |
| GBAK01000108 | BP13-14 | 40S ribosomal protein S5 Dermacentor variabilis [AAO92286.1] | 2e-143 |
| GBAK01000383 | BP13-14 | truncated 40S ribosomal protein S7 Amblyomma variegatum [DAA34567.1] | 4e-43 |
| 40S ribosomal protein S7, putative Ixodes scapularis [XP_002405269.1] | 9e-41 | ||
| GBAK01000050 | BP13-14 | ribosomal protein S8, putative Ixodes scapularis [XP_002400259.1] | 1e-106 |
| GBAJ01000003 | BP10 | 40S ribosomal protein S12 Dermacentor variabilis [AAP04352.1] | 2e-91 |
| GBAK01000242 | BP13-14 | 7e-80 | |
| GBAL01000145 | BP15-16 | 1e-91 | |
| GBAJ01000074 | BP10 | 40S ribosomal protein S14, putative Ixodes scapularis [XP_002415092.1] | 5e-57 |
| GBAK01000028 | BP13-14 | 2e-82 | |
| GBAI01000064 | BP6 | ribosomal protein S15Aa Ixodes scapularis [AAY66923.1] | 3e-65 |
| GBAJ01000026 | BP10 | 3e-63 | |
| GBAI01000097 | BP6 | 40S ribosomal protein S15, putative Ixodes scapularis [XP_002406430.1] | 8e-41 |
| GBAJ01000100 | BP10 | 1e-54 | |
| GBAK01000141 | BP13-14 | 2e-54 | |
| GBAL01000182 | BP15-16 | 4e-28 | |
| GBAI01000062 | BP6 | acidic ribosomal protein P0 Rhipicephalus microplus [AGQ49465.1] | 1e-29 |
| GBAK01000283 | BP13-14 | ribosomal protein S17 Dermacentor variabilis [ACF35534.1] | 3e-59 |
| ribosomal protein S17 Argas monolakensis [ABI52710.1] | 1e-55 | ||
| ribosomal protein S17, partial Ixodes scapularis [AAY66942.1] | 2e-55 | ||
| GBAI01000085 | BP6 | ribosomal protein S19, putative Ixodes scapularis [XP_002408352.1] | 1e-38 |
| GBAJ01000004 | BP10 | 2e-25 | |
| GBAK01000158 | BP13-14 | 2e-97 | |
| GBAI01000070 | BP6 | ribosomal protein S20, putative Ixodes scapularis [XP_002405144.1] | 9e-58 |
| ribosomal protein S20 Argas monolakensis [ABI52775.1] | 8e-58 | ||
| GBAJ01000011 | BP10 | ribosomal protein S20, putative Ixodes scapularis [XP_002405144.1] | 5e-59 |
| ribosomal protein S20 Argas monolakensis [ABI52775.1] | 3e-59 | ||
| GBAK01000380 | BP13-14 | ribosomal protein S20, putative Ixodes scapularis [XP_002405144.1] | 1e-52 |
| ribosomal protein S20 Argas monolakensis [ABI52775.1] | 2e-51 | ||
| GBAI01000045 | BP6 | 40S ribosomal protein S21 Ixodes scapularis [Q4PM64.1] | 9e-45 |
| GBAJ01000020 | BP10 | 1e-51 | |
| GBAL01000117 | BP15-16 | 7e-44 | |
| GBAI01000103 | BP6 | 40S ribosomal protein S23 Ixodes scapularis [Q86FP7.1] | 9e-60 |
| GBAI01000056 | BP6 | ribosomal protein S24 Ixodes scapularis [AAY66904.1] | 2e-66 |
| GBAJ01000083 | BP10 | 4e-69 | |
| GBAK01000149 | BP13-14 | ribosomal protein S24 Dermacentor variabilis [AAY40467.1] | 2e-79 |
| GBAL01000012 | BP15-16 | 5e-77 | |
| GBAK01000274 | BP13-14 | ribosomal protein S25 Ixodes scapularis [AAY66882.1] | 5e-47 |
| GBAK01000217 | BP13-14 | ubiquitin/ribosomal protein S27a fusion protein Dermacentor variabilis [ACF35544.1] | 1e-79 |
| GBAL01000172 | BP15-16 | 8e-32 | |
| GBAL01000116 | BP15-16 | ubiquitin/40S ribosomal protein S27a Ornithodoros parkeri [ABR23473.1] | 6e-43 |
| GBAK01000021 | BP13-14 | 40S ribosomal protein S27 Ixodes scapularis [AAY66945.1] | 2e-44 |
| GBAL01000206 | BP15-16 | 3e-28 | |
| GBAL01000058 | BP15-16 | 40S ribosomal protein S28 Ornithodoros parkeri [ABR23349.1] | 4e-25 |
| GBAI01000066 | BP6 | 40S ribosomal protein S30 Ixodes scapularis [AAY66965.1] | 2e-44 |
| GBAK01000194 | BP13-14 | 3e-65 | |
| GBAL01000160 | BP15-16 | 4e-65 | |
| GBAK01000279 | BP13-14 | 60S acidic ribosomal protein P1, putative Ixodes scapularis [XP_002435967.1] | 3e-32 |
| GBAK01000387 | BP13-14 | 20S proteasome, regulatory subunit beta, putative Ixodes scapularis [XP_002406585.1] | 1e-79 |
| GBAI01000100 | BP6 | Mitochondrion 16S ribosomal RNA (16S rRNA) gene Amblyomma americanum [L34313.1] | 3e-42 |
| GBAK01000003 | BP13-14 | 3e-68 | |
| GBAL01000010 | BP15-16 | 3e-68 |
Table 8.
Putative immunogenic proteins of miscellaneous function in Amblyomma americanum tick saliva
| Accession# | Source library | Top matches in GenBank [accession#] | e-values |
|---|---|---|---|
| GBAK01000340 | BP13-14 | transmembrane protein, putative Ixodes scapularis [XP_002406433.1] | 7e-30 |
| GBAK01000341 | BP13-14 | 1e-12 | |
| GBAK01000135 | BP13-14 | signal sequence receptor beta Ixodes scapularis [XP_002414113.1] | 5e-108 |
| GBAL01000069 | BP15-16 | 2e-85 | |
| GBAK01000145 | BP13-14 | selenoprotein, putative Ixodes scapularis [XP_002400767.1] | 1e-11 |
| GBAK01000160 | BP13-14 | selenoprotein K, putative Ixodes scapularis [XP_002403087.1] | 1e-06 |
| selenoprotein K Amblyomma variegatum [DAA34408.1] | 2e-06 | ||
| GBAI01000072 | BP6 | salivary selenoprotein M precursor Ixodes scapularis [AAY66722.1] | 1e-29 |
| GBAK01000292 | BP13-14 | beta-actin mRNA, complete cds Dermacentor variabilis [EF488512.2] | 4e-13 |
| GBAK01000044 | BP13-14 | myosin heavy chain, skeletal muscle or cardiac muscle, putative Ixodes scapularis [XP_002433460.1] | 8e-60 |
| GBAI01000046 | BP6 | myosin alkali light chain protein Haemaphysalis longicornis [ADN34300.1] | 2e-41 |
| GBAJ01000045 | BP10 | 3e-35 | |
| GBAJ01000066 | BP10 | 2e-39 | |
| GBAK01000412 | BP13-14 | myosin light chain 1, putative Ixodes scapularis [XP_002414092.1] | 1e-31 |
| GBAK01000014 | BP13-14 | nonmuscle myosin essential light chain Ixodes scapularis [XP_002407055.1] | 1e-97 |
| GBAK01000264 | BP13-14 | paramyosin Haemaphysalis longicornis [AFR32950.1] | 3e-45 |
| GBAI01000090 | BP6 | beta-tubulin, putative Ixodes scapularis [XP_002403010.1] | 3e-10 |
| GBAK01000075 | BP13-14 | dynein light chain Ixodes scapularis [XP_002408929.1] | 1e-60 |
| dynein light chain type 1 Rhipicephalus microplus [AHH29554.1] | 2e-60 | ||
| GBAJ01000053 | BP10 | zinc finger protein, putative Ixodes scapularis [XP_002413941.1] | 2e-81 |
| GBAK01000084 | BP13-14 | zinc finger protein, putative Ixodes scapularis [XP_002406104.1] | 1e-28 |
| GBAL01000027 | BP15-16 | 8e-29 | |
| GBAL01000011 | BP15-16 | zinc finger protein, putative Ixodes scapularis [XP_002408238.1] | 1e-06 |
| GBAI01000010 | BP6 | KSR 2 misexpression suppressor Amblyomma variegatum [DAA34564.1] | 7e-42 |
| GBAK01000152 | BP13-14 | 3e-42 | |
| GBAL01000052 | BP15-16 | 3e-42 | |
| GBAK01000081 | BP13-14 | Misexpression suppressor of KSR, putative, mRNA Ixodes scapularis [XM_002411057.1] | 6e-11 |
| GBAK01000363 | BP13-14 | BRI1-KD interacting protein, putative Ixodes scapularis [XP_002434447.1] | 2e-07 |
| GBAL01000026 | BP15-16 | histone H2 Dermacentor variabilis [ACF35543.1] | 2e-66 |
| GBAL01000127 | BP15-16 | DEK domain-containing protein, putative Ixodes scapularis [XP_002400977.1] | 3e-23 |
| GBAK01000039 | BP13-14 | small nuclear ribonucleoprotein sm D2, putative Ixodes scapularis [XP_002411748.1] | 2e-62 |
| GBAL01000037 | BP15-16 | 9e-63 | |
| GBAK01000113 | BP13-14 | snrnp sm protein, putative Ixodes scapularis [XP_002410602.1] | 7e-05 |
| GBAL01000243 | BP15-16 | translation initiation factor 3 and TGF-beta interacting protein, putative Ixodes scapularis [XP_002400973.1] | 1e-54 |
| GBAI01000025 | BP6 | translation initiation factor eIF3, p35 subunit, putative Ixodes scapularis [XP_002412399.1] | 1e-57 |
| GBAL01000007 | BP15-16 | translation initiation factor 4 F cap-binding subunit Amblyomma variegatum [DAA34255.1] | 3e-05 |
| GBAL01000135 | BP15-16 | translation factor Amblyomma variegatum [DAA34728.1] | 4e-22 |
| GBAJ01000048 | BP10 | eIF2B-gamma protein, putative Ixodes scapularis [XP_002414374.1] | 4e-39 |
| GBAK01000330 | BP13-14 | translation initiation factor 4 F, helicase subunit, putative Ixodes scapularis [XP_002407236.1] | 1e-81 |
| DEAD box ATP-dependent RNA helicase, putative Ixodes scapularis [XP_002414033.1] | 2e-69 | ||
| GBAL01000220 | BP15-16 | ribosomal DEAD box protein, putative Ixodes scapularis [XP_002414143.1] | 3e-126 |
| DEAD box ATP-dependent RNA helicase, putative Ixodes scapularis [XP_002414033.1] | 8e-62 | ||
| GBAJ01000025 | BP10 | ATP-dependent RNA helicase pitchoune, putative Ixodes scapularis [XP_002401339.1] | 5e-128 |
| GBAK01000055 | BP13-14 | translation elongation factor EF-1 alpha/Tu, putative Ixodes scapularis [XP_002411147.1] | 5e-45 |
| GBAK01000396 | BP13-14 | elongation factor 1 gamma, putative Ixodes scapularis [XP_002410199.1] | 5e-12 |
| GBAK01000102 | BP13-14 | isolate RAHD_87 Ruka SINE elements Rhipicephalus appendiculatus [EU018131.1] | 3e-16 |
| GBAI01000020 | BP6 | transcription initiation factor IIA gamma chain, putative Ixodes scapularis [XP_002410024.1] | 1e-69 |
| GBAK01000153 | BP13-14 | transcription initiation factor IID subunit Argas monolakensis [ABI52792.1] | 5e-27 |
| GBAK01000297 | BP13-14 | 1e-18 | |
| GBAL01000213 | BP15-16 | transcription factor E2F7, putative Ixodes scapularis [XP_002401356.1] | 6e-06 |
| GBAL01000259 | BP15-16 | transcription initiation factor TFII-D, subunit TAF10, putative Ixodes scapularis [XP_002409390.1] | 7e-09 |
| GBAK01000321 | BP13-14 | transcription factor containing NAC and TS-N domains, putative Ixodes scapularis [XP_002413138.1] | 1e-17 |
| transcription factor Amblyomma variegatum [DAA34590.1] | 4e-12 | ||
| GBAK01000162 | BP13-14 | methyl-CpG binding transcription regulator, putative Ixodes scapularis [XP_002407962.1] | 3e-12 |
| GBAK01000056 | BP13-14 | cleavage/polyadenylation factor Ia subunit Clp1p, putative Ixodes scapularis [XP_002406587.1] | 3e-94 |
| GBAK01000239 | BP13-14 | z-protein, putative Ixodes scapularis [XP_002401042.1] | 6e-20 |
| GBAK01000270 | BP13-14 | 5e-20 | |
| GBAK01000212 | BP13-14 | coiled-coil domain-containing protein, putative Ixodes scapularis [XP_002402814.1] | 1e-32 |
| GBAL01000077 | BP15-16 | 9e-33 | |
| GBAL01000049 | BP15-16 | activating signal cointegrator 1 complex subunit, putative Ixodes scapularis [XP_002401442.1] | 8e-43 |
| GBAL01000076 | BP15-16 | 2e-16 | |
| GBAK01000231 | BP13-14 | cytochrome C, putative Ixodes scapularis [XP_002411082.1] | 2e-54 |
| GBAJ01000096 | BP10 | cytochrome C Dermacentor variabilis [AAY86487.1] | 2e-62 |
| GBAJ01000064 | BP10 | histamine release factor mRNA, complete cds Boophilus microplus [DQ009479.1] | 2e-62 |
| histamine release factor mRNA, complete cds Amblyomma americanum [DQ009481.1] | 1e-09 | ||
| IgE-dependent histamine release factor mRNA, complete cds Dermacentor variabilis [AF467699.1] | 2e-09 | ||
| histamine release factor mRNA, complete cds Dermacentor andersoni [DQ009480.1] | 2e-07 | ||
| GBAK01000197 | BP13-14 | histamine release factor mRNA, complete cds Boophilus microplus [DQ009479.1] | 2e-43 |
| histamine release factor mRNA, complete cds Amblyomma americanum [DQ009481.1] | 3e-19 | ||
| IgE-dependent histamine release factor mRNA, complete cds Dermacentor variabilis [AF467699.1] | 5e-23 | ||
| histamine release factor mRNA, complete cds Dermacentor andersoni [DQ009480.1] | 1e-23 | ||
| GBAK01000077 | BP13-14 | amercin Amblyomma americanum [ABI74752.1] | 1e-36 |
| persulcatusin Ixodes persulcatus [BAH09304.1] | 4e-21 | ||
| defensin 2 Haemaphysalis longicornis [ABW08118.1] | 1e-20 | ||
| GBAK01000137 | BP13-14 | putative beta thymosin Dermacentor variabilis [AAO92284.1] | 8e-36 |
| GBAK01000092 | BP13-14 | gephyrin, putative Ixodes scapularis [XP_002404228.1] | 1e-67 |
| GBAK01000219 | BP13-14 | SNAP-25 (synaptosome-associated protein) component of SNARE complex, putative Ixodes scapularis [XP_002404177.1] | 9e-46 |
| GBAL01000092 | BP15-16 | vAMP-7, putative Ixodes scapularis [XP_002400270.1] | 7e-50 |
| GBAJ01000033 | BP10 | metaxin, putative Ixodes scapularis [XP_002404066.1] | 2e-131 |
| GBAK01000335 | BP13-14 | chaperonin complex component, TCP-1 eta subunit, putative Ixodes scapularis [XP_002415178.1] | 3e-07 |
| GBAK01000037 | BP13-14 | fidipidine, putative Ixodes scapularis [XP_002416086.1] | 1e-06 |
| GBAJ01000072 | BP10 | tetraspanin-like protein Dermacentor variabilis [AAL75584.1] | 1e-87 |
| GBAI01000038 | BP6 | saposin, putative Ixodes scapularis [XP_002412058.1] | 6e-54 |
| GBAL01000086 | BP15-16 | UBX domain-containing protein, putative Ixodes scapularis [XP_002413353.1] | 0.004 |
| GBAK01000033 | BP13-14 | UBX domain-containing protein, putative Ixodes scapularis [XP_002403277.1] | 2e-09 |
| GBAK01000302 | BP13-14 | MYC-induced nuclear antigen, putative Ixodes scapularis [XP_002434908.1] | 1e-11 |
| GBAL01000246 | BP15-16 | mitotic spindle assembly checkpoint protein MAD2A, putative Ixodes scapularis [XP_002401838.1] | 1e-40 |
| GBAK01000377 | BP13-14 | tumor rejection antigen (gp96), putative Ixodes scapularis [XP_002413149.1] | 8e-61 |
| Hsp90 protein, putative Ixodes scapularis [XP_002414808.1] | 3e-18 | ||
| GBAJ01000015 | BP10 | heat shock 70 kDa protein 5 Haemaphysalis longicornis [ACA84007.1] | 5e-13 |
| heat shock protein, putative Ixodes scapularis [XP_002433656.1] | 4e-10 | ||
| GBAL01000001 | BP15-16 | heat shock 70 kDa protein 5 Haemaphysalis longicornis [ACA84007.1] | 2e-50 |
| heat shock protein, putative Ixodes scapularis [XP_002433656.1] | 8e-41 |
Orphan immunogenic tick saliva protein coding cDNAs
Table 2 lists 86 contig sequences that code for orphan immunogenic A. americanum tick saliva proteins that show high amino acid identity with other tick proteins, but not with non-tick organisms. Of the 86 sequences, 12 sequences each were identified in BP6 and BP10, while 34 and 28 sequences were identified in BP13-14 and BP15-16, respectively. It is notable that except for 23 sequences that show similarity exclusively to other metastriata tick proteins, the remaining 63 sequences show similarity either exclusively to Ixodes spp. ticks or to both metastriata and prostriata tick proteins. In general metastriata and prostriata tick protein sequences tend to show low amino acid conservation. Thus, the 63 sequences in Table 2 that show high conservation could represent important immunogenic tick saliva proteins that regulate key tick physiological functions. Observations here that majority of A. americanum sequences in Table 2 show similarity to prostriata than metastriata tick proteins could be due to that at the time of this write up, there were more I. scapularis protein sequence entries in GenBank than metastriata tick entries. Thus some of the sequences that show similarity exclusively to I. scapularis might also be conserved in other metastriata ticks if genome sequence data became available.
Some notable observations in Table 2 include the GBAI01000007 sequence, which showed 74-97% amino acid identity with putative immunogenic secreted proteins from saliva of Rhipicephalus annulatus, Haemaphysalis quinghaiensis, Haemaphysalis longicornis, and I. scapularis (not shown). Likewise sequence GBAI01000013 showed similarity to mucin-like proteins previously described in Dermacentor variabilis and Amblyomma variegatum [71, 72]. Mucins are heavily glycosylated proteins with numerous functions including lubrication, cell signaling, and host defense against pathogens [73, 74]. Sequences GBAI01000021, GBAK01000213, and GBAL01000042 match with recently described A. americanum secreted saliva protein AV422 [70]. This cross-tick species conserved protein is characterized with 14 conserved cysteine amino acid residues predicted to form 7 disulfide bonds. Mulenga et al. [70] revealed the role of described protein in interrupting host hemostasis and complement activation. It is also interesting to note that a protein that is 97% identical to AV422 was recently described in the R. microplus proteome [75]. Additionally, R. microplus proteome [75] contains sequences which show a high level of identity to GBAI01000007, GBAI01000051, GBAK01000417, GBAK01000324, and GBAK01000378 sequences related to immunogenic hypothetical A. americanum proteins. Highly conserved proteins such as AV422, and others described here could represent important target antigens for the development of universal anti-tick vaccines, which are highly advocated for [30]. Male biopanned library originating sequence GBAL01000253 showed 80% amino acid sequence identity with putative I. scapularis 65 kDa macrophage protein. The role(s) of its intracellular mammalian ortholog is poorly understood, but a predicted phosphorylation site and a series of Ca2+ binding domains indicate that this protein could be involved in processes determining macrophage activity in immune response [76].
A. americanumtick saliva immunogenic proteases
Proteases are central to the physiology of all organisms. In tick physiology, proteases were linked to embryo development [77, 78], blood meal feeding [79], and host blood processing in the midgut [80]. Interfering with tick protease function, as revealed by RNAi silencing [81, 82], and feeding of ticks on animals immunized with recombinant proteases [83], affected tick feeding efficiency and reproduction. Here for the first time, we indicate that some protease-like molecules including Leukotriene A-4 hydrolase (LTA4H), asparaginyl endopeptidase, cysteine proteinases, carboxy- and metallo-proteases, as well as ubiquitin fusion degradation protein, are present in A. americanum tick saliva at the beginning of the tick feeding process (Table 3).
The presence of LTA4H in A. americanum is interesting and counter-intuitive. In mammals, the LTA4H enzyme catalyzes the last step in biosynthesis of leukotriene B4 (LTB4), a potent chemo attractant and proinflammatory lipid mediator derived from arachidonic acid [84, 85] that is involved in immune responses [86], host defense against infection [87], platelet activation [88], and lipid metabolism [89]. The pro-host defense functions of LTA4H are contrary to what the tick is expected to do to accomplish feeding, to block inflammation and other host defense mechanisms. From this perspective, it will be interesting to investigate if A. americanum LTA4H is functional. There is a possibility that A. americanum LTA4H performs other functions at the tick-feeding site.
Of the 18 sequences in Table 3, six sequences GBAI01000024, GBAJ01000008, GBAK01000094, GBAK01000180, GBAK01000182 and GBAK01000183 are provisionally identified as cathepsin-like cysteine proteases. Accumulating evidence suggests that secretion of cysteine proteases in A. americanum tick saliva is relatable to tick and host interactions. In mammals, cathepsin B and L are ubiquitously expressed and multifunctional, intracellular and extracellular [90]. They are involved with protein turnover housekeeping function in lysosomes [91], degradation of extracellular matrix [92], elimination of cellular mediators of inflammation such as neutrophils [93], and recent studies have demonstrated extracellular activity of human cathepsin B and L associated with inflammation function [94]. Ticks are pool feeders that accomplish feeding by disrupting host tissue and sucking up the blood that bleeds into the wound [95]. This feeding style is expected to provoke host tissue repair response, to which inflammation and extracellular matrix modeling are important [96, 97]. Thus, if functional, it is conceivable that tick saliva cathepsin B and L-like cysteine proteases could speculatively disrupt tissue repair response by killing cellular mediators of inflammation and destroying the extracellular matrix. There is indirect evidence for other parasites that show cysteine proteases as major components of the parasitic excretory-secretory immuno-proteome in Spirometra mansoni [98] and Euclinostomum heterostomum [99]. In related studies Fasciola hepatica secretes a cathepsin-L protease linked to invasion of host tissue by this parasite [100], while application of cysteine protease inhibitors had anti-parasitic effects against Chagas’ disease [101] and malaria [102] parasites. A lone study showed that H. longicornis cathepsin-L like cysteine protease, longipain displayed babesiacidal activity via specific adherence to the parasite membranes [103], which could indicate a role for cysteine proteases in tick immunity. Recently, R. microplus proteome analysis [75] revealed the presence of cathepsin-like cysteine protease sequence which appeared similar to GBAK01000094, GBAK01000182 and GBAK01000183 sequences described in this study.
In Table 3 we also listed sequence GBAK01000372, which showed identity to putative legumain-like protease precursor in D. variabilis. Legumain is a lysosomal cysteine protease that has a strict specificity for hydrolysis of asparaginyl bonds [104]. In human trematode parasite of blood vessels Schistosoma mansoni, this protease plays an important role in host hemoglobin degradation to diffusible peptides [105]. The same role is predicted for tick legumains found in the gut of H. longicornis [106] and Ixodes ricinus [107], as well as in sialotranscriptome analyses of Amblyomma maculatum [108].
Three sequences in Table 3, GBAJ01000040, GBAK01000214, and GBAL01000134 are provisionally identified as serine carboxypeptidases. Very little is known on serine carboxypeptidases in tick physiology research. A lone study characterized a H. longicornis tick serine carboxypeptidase that is predominantly expressed in midgut and up regulated in response to tick feeding with the yeast expressed recombinant protein cleaving substrates similar to those of human serine carboxypeptidase cathepsin A [109]. Indirect evidence in helminth parasites, Strongyloides ratti [110] and Angiostrongylus cantonensis [111], excretory-secretory proteomes suggests that serine carboxypeptidases are part of the protein complex that regulates helminth parasite and host interactions. The presence of serine carboxypeptidases in A. americanum tick saliva may indicate that similar to other parasites, ticks use this class of proteins to regulate tick-host interactions. It is notable that cathepsin A, the mammalian serine carboxypeptidases, has been linked to vasodilation, with malfunctions or deficiencies of this protein causing vasoconstriction [112]. One of the host’s defense mechanisms to the tick feeding style of lacerating host tissue is vasoconstriction. Could tick saliva serine carboxypeptidase be involved in mediating the tick’s vasodilating function? On the other hand, sequence GBAK01000358 shows identity to angiotensin-converting enzyme, a carboxypeptidase responsible for converting angiotensin I to angiotensin II, which constricts the blood vessels [113].
Four of the 18 sequences in Table 3, GBAK01000026, GBAK01000111, GBAK01000132, and GBAK01000196 show identity to annotated tick metalloproteases, with the last sequence showing identity to I. scapularis endothelin-converting enzyme. Expression of metalloproteases in tick salivary glands has been widely reported [114–116], with RNAi silencing of some affecting tick feeding efficiency and fertility in R. microplus [117] and I. ricinus [118], while feeding ticks on rabbits immunized with a recombinant tick metalloprotease affected H. longicornis tick feeding efficiency [119]. In a lone study, an I. scapularis recombinant metalloprotease similar to reprolysin had gelatinase and fibrinolytic activities [120]. Preventing blood clotting is among the most important “must do’s” for ticks to successfully feed. From this perspective it is possible that the four metalloproteases found in A. americanum tick saliva could play important roles in facilitating tick feeding. It is also interesting to note that excretory-secretory proteomes of several blood feeding and/or dwelling parasites such as Haemonchus contortus [121] , Onchocerca volvulus [122], A. cantonensis [123, 124], Ancylostoma caninum [125], Ancylostoma ceylanicum [126], and Clonorchis sinensis [127] have metalloproteases, which regulate interactions of these parasites with their vertebrate hosts. It is also notable that metalloproteases are a major component of snake venom that is responsible for hemorrhage and may also interfere with the hemostatic system [128]. The occurrence of an endothelin-converting enzyme-like protein in tick saliva could be considered counter-intuitive in that in mammals this protease is involved in proteolytic processing of endothelins, which are potent vasoconstrictor molecules [129]. Ticks feed over a long period of time, and thus to continue feeding, host blood vessels must stay dilated. With the help of endothelins, the host constricts its blood vessels in response to injury as occurs during tick feeding to prevent further blood loss. The tick overcomes this defense by secreting vasodilator molecules into the feeding site. From this perspective the observation of an endothelin-converting enzyme-like protein in A. americanum was surprising.
A lone sequence, GBAK01000269 showed similarity to ubiquitin fusion-degradation protein, a protease, which is involved in degradation of ubiquitin tagged proteins [130]. Apart from the annotated I. scapularis sequence in GenBank, the ubiquitin fusion-degradation protein appears to have not been studied prior to this report. Ubiquitin and ubiquitin fusion-degradation protein are part of the protein clearance system. It will be interesting to investigate if the ubiquitin fusion-degradation protein observed is functional. If so, could it be used by ticks to prematurely clear host defense factors? It is interesting to note that in addition to ubiquitin fusion-degradation protein in Table 3, we also observed that A. americanum secretes ubiquitin ligase as well as ubiquitin/ribosomal protein S27a fusion protein (Tables 6 and 7) during feeding. Could it be that the tick uses its own ubiquitin and ubiquitin fusion-degradation protein to tag and trigger degradation of host defense factors?
Protease inhibitors
Secretion of protease inhibitors in tick saliva as observed is not surprising. Given that host defenses against parasites are predominantly mediated by proteases, it’s widely hypothesized in parasite and host interaction studies that parasites including ticks could utilize protease inhibitors to evade host defenses [131, 132]. Table 4 lists 19 sequences that have been provisionally identified as inhibitors, serine protease inhibitors (GBAI01000043, GBAI01000058, GBAJ01000023, GBAJ01000027, GBAJ01000043, GBAK01000040, GBAK01000091, GBAK01000277, GBAK01000097, GBAL01000201 and GBAL01000059), cysteine protease inhibitors (GBAK01000064, GBAL01000013, and GBAL01000180), tick carboxypeptidase inhibitor (GBAK01000073), ATPase inhibitor (GBAJ01000071 and GBAK01000345), and translation initiation inhibitor (GBAK01000027 and GBAL01000098). It is notable, but not surprising that more than half of inhibitors found in A. americanum saliva in this study are putative inhibitors of serine proteases. Serine proteases have the “lions share” as mediators of the host’s defense pathway to tick feeding [132], and thus it is conceivable that the majority of inhibitors in tick saliva will target serine proteases. It is interesting to note that the majority of reported tick salivary gland or tick saliva protease inhibitors inhibit serine proteases or serine protease mediated pathways including elastase [52, 133, 134], trypsin [52, 134, 135], thrombin [135], factor Xa [135], blood clotting in general [52, 135], and complement activation [52, 136]. Mammalian cysteine proteases play important roles in mediating host defense reactions [132, 137], and thus it is logical that A. americanum may secrete cystatins, the cysteine protease inhibitors in its saliva. One of the three cystatins, GBAL01000180 show high amino acid identity to R. microplus cystatin (AGW80658.1), a validated functional inhibitor of mammalian cysteine proteases [138]. Likewise the tick carboxypeptidase inhibitor found in A. americanum tick saliva shows high amino acid identity to a functionally characterized homolog in R. bursa, which has fibrinolytic function suggesting that it plays roles in blood meal feeding [139]. Nucleotides ADP, ATP, and UTP released into the extracellular environment play roles in inflammation [140], and are powerful chemotactic stimuli for immune response cells [141], functions that must be blocked for the tick to successfully feed. There is a possibility that the ATPase inhibitor found in A. americanum tick saliva could participate in blocking extracellular ATP function and in so doing, allow the tick to evade host defense reactions. The occurrence of the translation initiation inhibitor in A. americanum tick saliva is intriguing. The general function of the translation initiation inhibitor is to disrupt synthesis of new proteins. The most immediate question is to test whether or not tick translation initiation inhibitor is functional, and if so does it internalize into host cells? If so does it block synthesis of new proteins at the tick-feeding site?
A. americanumtick saliva transporters and/or ligand binding proteins
We have provisionally identified A.americanum tick saliva transporters and/or binding proteins in Table 5 based on their putative ligand: iron and heme, calcium, immunoglobulin G, histamine, lipid and and/or fatty acid, actin, nucleic acid, insulin and miscellaneous. Except for proteins in the miscellaneous group, the occurrences of the majority of proteins in Table 5 are relatable to suspected molecular interactions between the host and the tick.
Ferritin and hemelipoprotein
Six and three sequences are provisionally identified as ferritin (GBAI01000078, GBAJ01000019, GBAJ01000036, GBAJ01000098, GBAK01000111, and GBAL01000165) and hemelipoglycoprotein (HeLp) (GBAJ01000035, GBAK01000315, and GBAL01000006), respectively. Both ferritin [142–145] and HeLp [146, 147] have been cloned and characterized in multiple tick species. During feeding and blood meal processing ticks are faced with the high risk of oxidative stress because of huge amounts of iron in host blood, and heme, a bi-product of hemoglobin digestion [148]. Although mechanisms need further clarification, ticks are protected against iron and heme mediated oxidative stress by ferritin [149] and HeLP [150]. Hajdusek et al. [149] proposed that ferritin bound host blood-derived iron, while HeLp bound heme and delivered it to tick tissues to meet cell requirements. The observation in this study that ticks inject ferritin and HeLp into the host during tick feeding raises an interesting question of whether or not the tick utilizes tick saliva ferritin and HeLp to dump iron and heme into the host to avoid oxidative stress. Tick secretion of ferritin and HeLp into the feeding-site could also benefit tick borne disease agents that may need iron and/or heme to proliferate [151, 152]. Except for microbial organisms such as Borrelia burgdorferi, which do not require iron for growth [153], most microbial organisms need iron and/or heme to proliferate [154, 155]. As an anti-microbial defense, mammalian hosts utilize ferritin to sequester iron and deny microbial organisms’ access to it [156]. From this perspective, it is logical to speculate that presence of ferritin and HeLp in tick saliva is advantageous to microbial organisms in that secreted ferritin and HeLp will deliver iron and heme into the feeding site to the advantage of the transmitted tick borne disease agent. It interesting to note that ferritin was up regulated in D. variabilis ticks that were infected with Rickettsia montana [157].
Data in this study also advance our knowledge on the biology of tick ferritins. Two ferritin cDNAs have been described in ticks, ferritin-1 which is deemed intracellular because it does not have a signal peptide, and ferritin-2, deemed secreted because it has a signal peptide [142, 149]. It is notable that both of the two-ferritin sequences (GBAI01000078 and GBAJ01000019) in this study showed high amino acid identity to ferritin 1 and not ferritin 2 (not shown). The partial ferritin sequence fragment in this study, GBAI01000078 is 100% identical to A. americanum ferritin-1 (AAQ54708.1). In contrast, ferritin sequence GBAJ01000019 showed ~60% identity to tick ferritin-1 sequences and 98% amino acid identity to mammalian ferritin such as Canis lupus familiaris (NP_001003080.1) (not shown). Although further verification is needed data presented here indicates the presence of a third ferritin in ticks. It is also interesting to note that similar to dog ferritin-1 (NP_001003080.1), which is 98% identical to GBAJ01000019 does not have a signal peptide. These data may suggest that ferritin in A. americanum tick saliva are secreted in a non-canonical way. Consistent with findings in this study, tick ferritin and HeLp were detected in partially and fully engorged R. microplus proteome [75].
Calcium binding proteins
Table 5 lists sequences showing identity to four putative calcium binding proteins, including calmodulin (GBAI01000083, GBAJ01000110, GBAK01000031, and GBAL01000053), calponin (GBAI01000101), calreticulin (GBAJ01000101 and GBAK01000025), and sarcoplasmic calcium binding protein (GBAL01000044). To complete feeding ticks must keep host blood in a fluid state at the tick-feeding site and in the midgut. Thus, given that calcium (Ca2+) is the fourth co-factor of the blood clotting activation pathway [158], it is conceivable that ticks may secrete Ca2+ binding proteins into the tick-feeding site to bind and deplete Ca2+ and prevent activation of blood clotting. Apart from potential Ca2+ function, the four A. americanum tick saliva putative Ca2+ binding proteins in Table 5 could perform multiple other yet unknown functions in tick physiology. In relative terms, calreticultin (CRT) is the most studied tick calcium-binding protein; it is a validated cross-tick species conserved immunogenic tick saliva protein [159] that is currently used as a biomarker for human tick bites [160]. However beyond this, the role(s) of CRT at the tick-feeding site are unknown. Recombinant CRT of parasites such as Trypanosoma cruzi [161], H. contortus [162], Entamoeba histolytica [163], Trypanosoma carassii [164], blocks the complement activation cascade by binding C1q, the first factor of the cascade. Additionally H. contortus calreticulin was also shown to bind factor Xa [162], an important protease of the blood-clotting cascade [165]. In a related study (Kim and Mulenga, unpublished), showed that a yeast expressed recombinant A. americanum calreticulin bound C1q, but did not interfere with complement activation. From these data tick calreticulin may function differently when compared to other parasites. It is also interesting to note that both mammalian and parasite calreticulin were shown to enhance wound healing [166]. Whether or not, tick saliva calreticulin enhances wound healing has not been reported. If consistent with observations in other organisms, it would be counter-intuitive for tick calreticulin to enhance wound healing. Ticks begin the feeding process by creating a feeding lesion, and to continue feeding, ticks must block wound healing mechanisms for the feeding site to remain viable [167]. Similar to calreticulin, calmodulin is multifunctional protein that is primarily known for its roles in Ca2+ homeostasis in mammals [168]. Except for a single study that described a H. longicornis tick calmodulin-like protein [169], nothing is known about this protein in tick physiology. Similarly, there are no studies on the roles of calponin in tick physiology. In mammals, calponin performs multiple functions including regulation of actin, Ca2+, and ATPase [170–172]. Whether or not tick calponin is multi-functional remains to be determined. Similarly, there are no reported studies on the sarcoplasmic-calcium binding protein in ticks. This molecule has been characterized in multiple invertebrates [173–175], and is considered a key factor in human allergic reactions to shrimp [174, 175]. It will be interesting to find out what these proteins do at the tick-feeding site.
Fatty acid and histamine (lipocalin) binding proteins
Eight sequences (GBAI01000035, GBAK01000066, GBAK01000093, GBAK01000144, GBAK01000151, GBAL01000122, GBAL01000248, and GBAL01000133) and one sequence (GBAJ01000056) are provisionally identified as putative histamine binding/lipocalin and fatty acid binding protein, respectively. Presence of lipid derivatives in tick saliva has been demonstrated, and been shown to play important roles in tick feeding success. Prostaglandins (PGs), derivatives of arachidonic acid, are important vasodilators, which contributes to the tick’s ability to block vasoconstriction of host blood vessels as a host defense response to tissue injury during tick feeding [176]. Several studies demonstrated secretion of PGE2 [177–179] and prostacyclin (PGI) [32] in tick saliva. Tick saliva PGE2 was shown to interfere with function of macrophages [180] and dendritic [181] cells, which are important in host defense response [182, 183]. Despite the demonstration that PGs are secreted into tick saliva, their mode of secretion has not been elucidated. There is a possibility that lipid-binding proteins found in this study serve as PG transporters. We would like to caution here that A. americanum hemolymph PGE2 was found not bound to any carrier protein [35] suggesting that it may not require a transporter protein. Thus there is a possibility that putative lipid binding proteins described here may perform other functions at the tick feeding site that may not be related to transporting lipids from the tick into the tick-feeding site.
Ticks have to overcome the host’s inflammation response to complete feeding. Histamine is a potent pro-inflammatory molecule that is released by cellular mediators of inflammation such as mast cells and neutrophils [184]. Thus, it is logical that A. americanum tick saliva contains proteins like histamine-binding proteins/lipocalin to sequester histamine and stop the inflammation response. Histamine mediated cutaneous inflammation is one the host’s defense reactions to tick feeding, as demonstrated by adverse effects on tick attachment, feeding efficiency, and reproductive success when histamine was elevated at the feeding site [185, 186].
Nucleic acid binding proteins
Table 5 lists three putative nucleotide binding proteins, GBAK01000068, GBAL01000186, and GBAJ01000103 that have been provisionally identified as respective GTP-binding, ATP-binding, and histidine triad known as purine-binding protein [187]. In addition, four sequences related to RNA- (GBAL01000055, GBAL01000072, and GBAL01000222) and DNA- (GBAK01000395) binding proteins were identified. Tick feeding involves disrupting host cells, which could lead to release of nucleic acids outside the cell. Extracellular nucleic acids are potent pro-inflammatory molecules. Thus listed putative nucleic acid binding proteins could be part of the ticks system to modulate host inflammation response to tick feeding activity. Here it is appropriate to mention that a number of sequences which showed identity to different transcriptional and translational factors, which are predicted to interact with nucleic acids (GBAI01000020, GBAI01000025, GBAJ01000025, GBAJ01000048, GBAK01000039, GBAK01000055, GBAK01000102, GBAK01000113, GBAK01000153, GBAK01000162, GBAK01000297, GBAK01000321, GBAK01000330, GBAK01000337, GBAL01000007, GBAL01000037, GBAL01000127, GBAL01000135, GBAL01000213, GBAL01000220, GBAL01000243, and GBAL01000259), are listed in the Table 8.
Immunoglobulin and other miscellaneous binding proteins
Secretion of immunoglobulin G (IgG) in tick saliva was demonstrated [188], and thus the occurrence of IgG binding protein in A. americanum (GBAK01000082 and GBAK01000159) saliva is not surprising. While the possibility that this protein performing other functions at the tick-feeding site cannot be ruled out, it’s most likely that the IgG binding protein in A. americanum tick saliva is used to eliminate host antibodies from the tick body during the feeding process, as previously supposed [188, 189].
Sequence GBAK01000246 showed similarity to insulin-like growth factor binding protein-related protein 6 (IGFBP-rP6). Mulenga and Khumthong [190] characterized two alternative IGFBP-rP6 sequences in A. americanum, short and long, and using dual RNAi silencing showed reduction in feeding efficiency in treated females. Although the function of IGFBP-rP6 in the tick feeding process is still unclear, our results here confirm the presence of this protein in tick saliva and that it’s antigenic.
A lone sequence GBAL01000113 appeared similar to the chemokine binding protein evasin-1 from Rhipicephalus sanguineus, which displayed a high affinity for pro-inflammatory CCL3, CCL4, and CCL18 chemokines [191]. Pro-inflammatory chemokines are responsible for migration of lymphocytes to an injured site, which represents a key event in an immune response. Chemokines CCL3 and CCL4 both attract mononuclear cells, while CCL18 may be involved early in an immune response since it attracts naive CD45RA+ T cells [192]. Chemokine sequestration by a chemokine binding proteins, secreted at the feeding site, helps ticks to evade host immune response.
Table 5 listed two sequences related to cyclophilin A (GBAK01000236 and GBAL01000024), a ubiquitous protein, which binds tightly to potent immunosuppressant cyclosporine A [193] and shows peptidyl-prolyl cis-trans isomerase activity [194]. The immunosuppressive action is exerted through complex between cyclophiline A, cyclosporine A, and protein phosphatase known as calcineurin [195]. Phosphatase activity of calcineurin plays a role in activation of T cells [196]. Formation of cyclophiline A and cyclosporine A complex blocks calcineurin phosphatase activity, and subsequently inhibits T cell activation [197]. In addition, recently intracellular cyclophilin A was shown to be an important Ca2+ modulator in platelets [198]. Thus, we can speculate that cyclophilin A from tick saliva could be involved in both, evading host immune response and affecting primary hemostasis. It also seems that cyclophilin A plays a role in tick-pathogen interactions. Maeda et al. [199] suggested that cyclophilin A has regulatory role in the growth of Babesia parasites in H. longicornis ticks.
Anti-oxidant and other enzymes
Approximately 17% (81/464) of provisionally identified A. americanum immunogenic tick saliva protein sequences in this study are associated with anti-oxidant, energy metabolism, and other miscellaneous functions enzymes (Table 6). It is interesting to note that some of the housekeeping enzymes identified in this study were also found in R. sanguineus [200] and R. microplus [75] tick saliva proteomes ruling out the possibility that observations here could be a result of false antibody binding. In related studies, housekeeping proteins described here, were predicted to be secreted in saliva of A. americanum [201], I. scapularis [202], Dermacentor andersoni [203], and A. maculatum [108]. Except for putative anti-oxidants and a few others, the role(s) of the majority of listed enzymes in tick-host interactions are unclear. It is notable, but not surprising that ~50% of A. americanum tick saliva enzymes in Table 6 including glutathione-S transferase (GST), protein disulfide isomerase, alkyl hydroperoxide reductase, cytochrome c oxidase, oxidoreductase, gamma-glutamyltransferase, NADH dehydrogenase, thioredoxin reductase, and peroxidase, which are putatively associated with an anti-oxidant functions [204–208]. Injury as occurs at the tick-feeding site induces oxidative stress leading to production of reactive oxygen and nitrogen species (ROS and RNS) as part of the wound healing mechanism [209] and anti-microbial defenses [210]. Several lines of research have shown that many parasites including ticks [211, 212], helminths [213], Plasmodium spp. [214], Trypanosoma spp. [215], are susceptible to ROS and/or RNS, as revealed by high expression of anti-oxidant enzymes in these parasites or survival of these parasites when anti-oxidant systems of their hosts are impaired [216–218]. Thus it is fitting that A. americanum tick saliva will contain such a high number of putative antioxidants. Given the susceptibility of microbial organisms to oxidative stress products, anti-oxidants in tick saliva could be beneficial for transmission of tick borne diseases. It is also interesting to note that given that the tissue destroying effects of oxidative stress products are non-selective, there is a possibility that tick saliva anti-oxidants are protective to host tissue. Tick GST has been studied as a target anti-tick vaccine candidate and seems to confer protection in R. microplus and H. longicornis [219]. Here it is appropriate to mention that three sequences listed in Table 8 were provisionally identified as selenoproteins K (GBAK01000145 and GBAK01000160) and M (GBAI01000072). Recently, both of them were associated with regulation of cytosolic Ca2+ flux, as well as with protective role against oxidative damages [220, 221]. Presence of selenoproteins in saliva increases the power of ticks’ anti-oxidative mechanism. Another notable interesting enzyme is D-dopachrome tautomerase, the functional homolog of macrophage migration inhibitory factor [222], which could be involved in mediating host defense mechanism.
Ribosomal, heat shock proteins, histamine release factor, and other proteins of miscellaneous functions
Table 7 lists ribosomal proteins in A. americanum tick saliva. Although the high number of ribosomal proteins may be surprising, the presence of these proteins in tick saliva is relatable to events that facilitate tick-host interactions. Ribosomal proteins function is predominantly intracellular, but several studies have described extracellular functions of ribosomal proteins in mammals exerting anti-inflammatory activity [223–225]. One of the most studied, ribosomal protein S19 was recently shown to bind the pro-inflammatory cytokines [224]. Whether or not A. americanum putative S19 protein (GBAI01000085, GBAJ01000004, and GBAK01000158) will functionally bind pro-inflammatory cytokines remains to be investigated. It is conceivable that ribosomal-like proteins in tick saliva could be part of the tick’s system to evade the host’s inflammation defense response to tick feeding. Indirect evidence suggests that other parasites use ribosomal proteins to evade host defenses. A Leishmania S3a ribosomal protein was associated with balancing between Th1 and Th2 immune responses [226], while ribosomal protein L12 was crucial in gonococcal invasion of human reproductive cells [227].
Like ribosomal proteins, extracellular heat shock proteins (HSP) are potent anti-inflammatory molecules [228] and thus, presence of HSP70 and gp96-like proteins in A. americanum tick saliva (Table 8) could mean that the tick uses these proteins to evade the host’s inflammation defense against tick feeding. The observation of the tick histamine release factor (tHRF) in A. americanum confirms previously published studies that demonstrated presence of functional tHRF in D. variabilis tick saliva [62, 63]. What is interesting, however is that the occurrence of this protein in tick saliva is counter-intuitive in that if functional at the tick-feeding site, its actions will promote inflammation, which is what the tick is trying to defeat. It is notable that tHRF was linked to interactions between ticks and pathogens in that the encoding mRNA was up regulated in R. montana-infected D. variabilis [157] and associated with Borrelia transmission by I. scapularis ticks [229].
Among other notable proteins of miscellaneous function in A. americanum tick saliva (Table 8) include zinc finger-like proteins (GBAJ01000053, GBAK01000084, GBAL01000011, and GBAL01000027). Members of the zinc finger protein family are structurally diverse and are involved with many functions including, replication and repair, transcription and translation, metabolism and signaling, cell proliferation and apoptosis [230]. Typical zinc finger protein ligands include nucleic acids, proteins, and important small molecules [230].
Other interesting sequences include contigs GBAK01000239 and GBAK01000270 that were provisionally identified as z-proteins (Table 8), known as cofactors in coagulation factor Xa degradation by z-protein dependent protease inhibitor [231]. In murine model, z-protein and z-protein dependent protease inhibitor deficiency enhances thrombosis [232], which indicates their important role in preventing blood coagulation in homeostasis. Secretion of tick z-protein at the feeding site probably helps in local inhibition of the host coagulation cascade.
A lone sequence GBAK01000077 showed similarity to defensin proteins, an antimicrobial agent of innate immunity [233]. A defensins were described in several hard tick species. Persulcatusin, from Ixodes persulcatus, found to be predominantly expressed in the midgut of adult females, and as recombinant peptide displayed antibacterial activity toward Gram-positive bacteria [234]. Defensin gene in A. americanum was found to be expressed in both, midgut and salivary glands [235]. Data here is the first demonstration of defensin proteins in tick saliva. In addition to evading host defenses to tick feeding, and ensuring that blood does not clot, the tick must prevent bacterial or microbial colonization of the feeding site. Thus, it’s conceivable that defensin in tick saliva could be used to keep infections of the feeding site.
Other proteins found in A. americanum saliva were related to the protein translation machinery and structural related, myosin-like and paramyosin proteins. The roles of these proteins at the tick-feeding site remain to be explored. It is interesting to note that R. microplus paramyosin was reactive with tick immune sera [236, 237] suggesting that it was part of the immunogenic tick saliva protein complex that conferred anti-tick resistance in repeatedly infested animals.
At a glance, it is surprising that we identified a large number of intracellular proteins in tick saliva. We belive this could be due to the mode of salivary secretion. There are described mechanisms of exocytosis of proteins from salivary gland cells into the saliva [238, 239], but massive appearance of originally intracellular proteins in tick saliva suggests actuality of previously proposed holocrine or apocrine modes of salivary secretion [240].
Conclusion
Multiple tick salivary gland transcriptomes have predicted secreted tick salivary proteins [108, 114, 241–244], while two recent studies provided insight into the complexity of tick saliva proteomes [75, 200]. This study contributes to the emerging and growing knowledge on the complexity of the immunogenic A. americanum tick saliva proteome. Data here provides an interesting foundation on the range of candidate proteins to be screened in the quest to discover anti-tick target vaccine antigens. One of the key observations in this study is that housekeeping-like proteins were immunogenic, and thus must be given a new look in our search for anti-tick vaccine antigens. Given that housekeeping proteins tend to be highly conserved across taxa, one may assume that they were more likely not to provoke an immune reaction. Could it be that, although primary structures were highly conserved, there are important secondary structure departures that prevented the host from recognizing these proteins as self? The biopanning approach used here has limitations, and thus identification of some proteins here could be result of the cross-reactivity of antibodies used here with none-tick saliva proteins. We are confident that this is not the case in that previously confirmed tick saliva proteins, including tHRF [62], AV422 [70], paramyosin [236], defensin [235], selenoproteins [108], calreticulin [245], and histamine binding/lipocalins [54] were found in this study. This study though descriptive provides a foundation for the design of anti-tick target vaccine antigens.
Availability of supporting data
All the supporting data are included as an additional file.
Electronic supplementary material
Additional file 1: List of sequences encoding hypothetical immunogenic 24-48 h fed Amblyomma americanum tick saliva proteins which do not match tick sequences present in GenBank. (XLSX 25 KB)
Acknowledgements
This work was supported by the National Institute of Allergy and Infectious Diseases/National Institutes of Health (NIAID/NIH) grants (AI081093 and AI093858) to AM.
Footnotes
Competing interests
The authors declare that they have no competing interests.
Authors’ contributions
AM designed and coordinated the experiment, participated in data analysis and interpretation, and manuscript drafting and editing. ŽMR carried out parent libraries construction, biopanning protocol, and preparation of samples for the next generation sequencing, participated in data analysis and manuscript drafting and editing. TKK prepared templates used for libraries construction and participated in manuscript editing. LMP performed bioinformatic analysis of the next generation sequencing data and participated in data analysis and manuscript editing. S-HS participated in bioinformatic analysis. LL participated in data analysis and manuscript editing. All authors read and approved the final manuscript.
Contributor Information
Željko M Radulović, Email: zeljko.radulovic@ag.tamu.edu.
Tae K Kim, Email: taekim009@gmail.com.
Lindsay M Porter, Email: lindsayporter84@gmail.com.
Sing-Hoi Sze, Email: shsze@cse.tamu.edu.
Lauren Lewis, Email: laalewis@yahoo.com.
Albert Mulenga, Email: a-mulenga@tamu.edu.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Additional file 1: List of sequences encoding hypothetical immunogenic 24-48 h fed Amblyomma americanum tick saliva proteins which do not match tick sequences present in GenBank. (XLSX 25 KB)