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Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1978 Feb;75(2):645–649. doi: 10.1073/pnas.75.2.645

An RNA transcribed from DNA at the origin of phage fd single strand to replicative form conversion.

K Geider, E Beck, H Schaller
PMCID: PMC411312  PMID: 204927

Abstract

Phage fd DNA complexed with DNA binding protein I was used by Escherichia coli RNA polymerase (nucleoside triphosphate:RNA nucleotidyltransferase, EC 2.7.7.6) to synthesize an RNA at the origin of single strand to double strand replication. The isolated ori-RNA gave a simple fingerprint after nucleolytic digestion and has a length of about 30 nucleotides. The characterization of the oligonucleotides from the nuclease digest and the extension of the ori-RNA with DNA polymerase I and subsequent restriction of the DNA gave its exact localization in the fd genome, and its total sequence was deduced from the known DNA sequence in this region.

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Selected References

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  1. Berthold V., Geider K. Interaction of DNA with DNA-binding proteins. The characterization of protein HD from Escherichia coli and its nucleic acid complexes. Eur J Biochem. 1976 Dec 11;71(2):443–449. doi: 10.1111/j.1432-1033.1976.tb11132.x. [DOI] [PubMed] [Google Scholar]
  2. Bouché J. P., Zechel K., Kornberg A. dnaG gene product, a rifampicin-resistant RNA polymerase, initiates the conversion of a single-stranded coliphage DNA to its duplex replicative form. J Biol Chem. 1975 Aug 10;250(15):5995–6001. [PubMed] [Google Scholar]
  3. Brutlag D., Schekman R., Kornberg A. A possible role for RNA polymerase in the initiation of M13 DNA synthesis. Proc Natl Acad Sci U S A. 1971 Nov;68(11):2826–2829. doi: 10.1073/pnas.68.11.2826. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Burgess R. R., Jendrisak J. J. A procedure for the rapid, large-scall purification of Escherichia coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA-cellulose chromatography. Biochemistry. 1975 Oct 21;14(21):4634–4638. doi: 10.1021/bi00692a011. [DOI] [PubMed] [Google Scholar]
  5. Geider K., Kornberg A. Conversion of the M13 viral single strand to the double-stranded replicative forms by purified proteins. J Biol Chem. 1974 Jul 10;249(13):3999–4005. [PubMed] [Google Scholar]
  6. Geider K. Molecular aspects of DNA replication in Escherichia coli systems. Curr Top Microbiol Immunol. 1976;74:55–112. doi: 10.1007/978-3-642-66336-9_3. [DOI] [PubMed] [Google Scholar]
  7. Gray C. P., Sommer R., Polke C., Beck E., Schaller H. Structure of the orgin of DNA replication of bacteriophage fd. Proc Natl Acad Sci U S A. 1978 Jan;75(1):50–53. doi: 10.1073/pnas.75.1.50. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Heyden B., Nüsslein C., Schaller H. Single RNA polymerase binding site isolated. Nat New Biol. 1972 Nov 1;240(96):9–12. doi: 10.1038/newbio240009a0. [DOI] [PubMed] [Google Scholar]
  9. Horiuchi K., Zinder N. D. Origin and direction of synthesis of bacteriophage fl DNA. Proc Natl Acad Sci U S A. 1976 Jul;73(7):2341–2345. doi: 10.1073/pnas.73.7.2341. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. McHenry C., Kornberg A. DNA polymerase III holoenzyme of Escherichia coli. Purification and resolution into subunits. J Biol Chem. 1977 Sep 25;252(18):6478–6484. [PubMed] [Google Scholar]
  11. Mirzabekov A. D., Griffin B. E. 5 s RNA conformation. Studies of its partial T 1 ribonuclease digestion by gel electrophoresis and two-dimensional thin-layer chromatography. J Mol Biol. 1972 Dec 30;72(3):633–643. doi: 10.1016/0022-2836(72)90181-7. [DOI] [PubMed] [Google Scholar]
  12. Reichard P., Eliasson R., Söderman G. Initiator RNA in discontinuous polyoma DNA synthesis. Proc Natl Acad Sci U S A. 1974 Dec;71(12):4901–4905. doi: 10.1073/pnas.71.12.4901. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Schaller H., Uhlmann A., Geider K. A DNA fragment from the origin of single-strand to double-strand DNA replication of bacteriophage fd. Proc Natl Acad Sci U S A. 1976 Jan;73(1):49–53. doi: 10.1073/pnas.73.1.49. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Sigal N., Delius H., Kornberg T., Gefter M. L., Alberts B. A DNA-unwinding protein isolated from Escherichia coli: its interaction with DNA and with DNA polymerases. Proc Natl Acad Sci U S A. 1972 Dec;69(12):3537–3541. doi: 10.1073/pnas.69.12.3537. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Tabak H. F., Griffith J., Geider K., Schaller H., Kornberg A. Initiation of deoxyribonucleic acid synthesis. VII. A unique location of the gap in the M13 replicative duplex synthesized in vitro. J Biol Chem. 1974 May 25;249(10):3049–3054. [PubMed] [Google Scholar]
  16. Wickner W., Brutlag D., Schekman R., Kornberg A. RNA synthesis initiates in vitro conversion of M13 DNA to its replicative form. Proc Natl Acad Sci U S A. 1972 Apr;69(4):965–969. doi: 10.1073/pnas.69.4.965. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Wickner W., Kornberg A. DNA polymerase 3 star requires ATP to start synthesis on a primed DNA. Proc Natl Acad Sci U S A. 1973 Dec;70(12):3679–3683. doi: 10.1073/pnas.70.12.3679. [DOI] [PMC free article] [PubMed] [Google Scholar]

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