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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2014 Jun 21;70(Pt 7):o803. doi: 10.1107/S1600536814014093

4-(2,3-Di­hydro­thieno[3,4-b][1,4]dioxin-5-yl)aniline

Lauren A Mitchell a, Bradley J Holliday a,*
PMCID: PMC4120538  PMID: 25161584

Abstract

In the title mol­ecule, C12H11NO2S, the dioxane-type ring adopts a half-chair conformation. The thio­phene ring forms a dihedral angle of 12.53 (6)° with the benzene ring. In the crystal, N—H⋯O, hydrogen bonds link mol­ecules, forming chains along the c-axis direction. A weak intra­molecular C—H⋯O hydrogen bond is observed.

Keywords: crystal structure

Related literature  

For related structures, see: Chen et al. (2011); Riehn et al. (2000); Sotzing & Reynolds (1996). For the properties of 4-(2,3-di­hydro­thieno[3,4-b][1,4]dioxin-5-yl)aniline see: Trippé-Allard & Lacroix (2013).graphic file with name e-70-0o803-scheme1.jpg

Experimental  

Crystal data  

  • C12H11NO2S

  • M r = 233.28

  • Orthorhombic, Inline graphic

  • a = 6.9117 (6) Å

  • b = 7.0898 (6) Å

  • c = 21.4784 (16) Å

  • V = 1052.50 (15) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.29 mm−1

  • T = 100 K

  • 0.29 × 0.27 × 0.08 mm

Data collection  

  • Rigaku Saturn724+ diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 2001) T min = 0.858, T max = 1.000

  • 11854 measured reflections

  • 1853 independent reflections

  • 1812 reflections with I > 2σ(I)

  • R int = 0.047

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.029

  • wR(F 2) = 0.075

  • S = 0.86

  • 1853 reflections

  • 153 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.43 e Å−3

  • Δρmin = −0.21 e Å−3

  • Absolute structure: Flack (1983), 743 Friedel pairs

  • Absolute structure parameter: 0.03 (8)

Data collection: CrystalClear (Rigaku, 2008); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008) within WinGX (Farrugia, 2012); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012), POV-RAY (Cason, 2004) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814014093/lh5708sup1.cif

e-70-0o803-sup1.cif (21.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814014093/lh5708Isup2.hkl

e-70-0o803-Isup2.hkl (89.4KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814014093/lh5708Isup3.cml

CCDC reference: 1008614

Additional supporting information: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H10A⋯O1i 0.88 (3) 2.52 (3) 3.352 (2) 160 (2)
C8—H8⋯O2 0.93 2.36 2.998 (2) 126

Symmetry code: (i) Inline graphic.

Acknowledgments

The data were collected using instrumentation purchased with funds provided by the National Science Foundation (grant No. CHE-0741973). The Welch Foundation (grant No. F-1631) and the National Science Foundation (grant No. CHE-0847763) are acknowledged for financial support of this research.

supplementary crystallographic information

S1. Comment

The title compound is composed of an aniline moiety with a 3,4-ethylenedioxythiophene group appended at the 4-position, see Fig. 1. It has been used in the development of π-conjugated oligomers, which have low HOMO-LUMO gaps and are easily oxidized at low potentials, making them potential materials for photovoltaics and other optoelectronic applications (Trippé-Allard & Lacroix, 2013). The geometry of the ethylenedioxythiophene moiety is similar to other ethylenedioxythiophene containing compounds reported in the literature, which includes the six-membered dioxane-type ring in the half-chair conformation (Chen et al., 2011; Sotzing & Reynolds, 1996; Riehn et al., 2000). The dihedral angle between the thiophene and benzene rings is 12.53 (6)°. In the crystal, N1—H10A···O1i hydrogen bonds link molecules into chains along the c axis (Fig. 2). A weak intramolecular C—H···O hydrogen bond is also observed.

S2. Experimental

To a solution of dry toluene under N2 was added tributyl(2,3-dihydrothieno[3,4-b][1,4]dioxin-5-yl)stannane (21.4 g, 49.5 mmol), 4-iodonitrobenzene (7.7 g, 30.9 mmol), trans-dichlorobis(triphenylphosphine) palladium (II) (0.3 g, 0.5 mmol), and copper (I) chloride (0.2 g, 1.1 mmol). The solution was refluxed at 383 K overnight. The black solution was exposed to atmosphere and conc. under reduced pressure. The solid was dissolved in dichloromethane and filtered over a bed of silica. The filtrate was conc. and recycrystallized in a dichloromethane/hexanes mixture to yield a bright yellow solid. The isolated yellow solid was added to a round bottom and dissolved in tetrahydrofuran (THF). Charcoal (8.39 g) and 5 ml of H2O was added and the mixture was heated to 323 K. Sodium borohydride (2.66 g, 70.5 mmol) was added in four portions over 1 hr. The reaction was heated for an additional 30 min after the last addition. The mixture was cooled to room temp. and filtered, washing with THF. The solution was concentrated then re-dissolved in CH2Cl2 and washed with H2O. The organic layer was concentrated to a third the original volume and mixed with an equal volume of hexanes. The solution was left standing overnight at 273 K and the orange crystals that precipitated were collected by vacuum filtration (4.63 g, 64% yield). These crystals were found suitable for X-ray diffraction. m.p. 376 K. 1H NMR (300 MHz, CDCl3): δ 7.51 (dt, J = 8.7, J = 2.1, 2H), 6.66 (dt, J = 8.7, J = 2.4, 2H), 6.19 (s, 1H), 4.25 – 4.18 (m, 4H), 3.64 (b, 2H); 13C{1H} NMR (75 MHz, CDCl3): δ 145.2, 142.1, 136.6, 127.2, 123.5, 117.9, 115.0, 95.5, 64.5, 64.4; Anal Calcd for C12H11NO2S: C, 61.78; H, 4.75; N, 6.00. Found: C, 61.67; H, 4.07; N, 5.90.

S3. Refinement

The amine H atoms were located in a difference Fourier map and both positional and isotropic displacement parameters were refined. All other H atoms were positioned geometrically and refined using a riding model, with C—H = 0.93–0.97 Å and with Uiso(H) = 1.2 times Ueq(C).

Figures

Fig. 1.

Fig. 1.

Molecular structure of title compound. Ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

Part of the crystal structure viewed along the b axis. Thin black lines indicate N—H···O hydrogen bonds.

Crystal data

C12H11NO2S F(000) = 488
Mr = 233.28 Dx = 1.472 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71075 Å
Hall symbol: P 2ac 2ab Cell parameters from 2964 reflections
a = 6.9117 (6) Å θ = 2.9–28.2°
b = 7.0898 (6) Å µ = 0.29 mm1
c = 21.4784 (16) Å T = 100 K
V = 1052.50 (15) Å3 Plate, orange
Z = 4 0.29 × 0.27 × 0.08 mm

Data collection

Rigaku Saturn724+ diffractometer 1853 independent reflections
Radiation source: fine-focus sealed tube 1812 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.047
Detector resolution: 28.5714 pixels mm-1 θmax = 25.0°, θmin = 3.0°
profile data from ω scans h = −8→8
Absorption correction: multi-scan (ABSCOR; Higashi, 2001) k = −8→8
Tmin = 0.858, Tmax = 1.000 l = −22→25
11854 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.075 w = 1/[σ2(Fo2) + (0.0543P)2 + 0.6318P] where P = (Fo2 + 2Fc2)/3
S = 0.86 (Δ/σ)max = 0.001
1853 reflections Δρmax = 0.43 e Å3
153 parameters Δρmin = −0.21 e Å3
0 restraints Absolute structure: Flack (1983), 743 Friedel pairs
Primary atom site location: structure-invariant direct methods Absolute structure parameter: 0.03 (8)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.53914 (6) 0.63412 (6) 0.83637 (2) 0.02511 (15)
O1 0.73741 (18) 0.56761 (18) 0.66914 (6) 0.0229 (3)
O2 1.02695 (18) 0.47874 (17) 0.76297 (6) 0.0203 (3)
N1 1.1401 (3) 0.4133 (3) 1.07137 (9) 0.0332 (4)
C1 0.5329 (3) 0.6408 (3) 0.75642 (9) 0.0257 (4)
H1 0.4267 0.6801 0.7332 0.031*
C2 0.7019 (3) 0.5818 (2) 0.73164 (9) 0.0199 (4)
C3 0.9069 (3) 0.4540 (3) 0.65674 (9) 0.0238 (4)
H3A 0.9447 0.4687 0.6135 0.029*
H3B 0.8767 0.3220 0.6638 0.029*
C4 1.0715 (3) 0.5118 (3) 0.69824 (8) 0.0207 (4)
H4A 1.1865 0.4411 0.6870 0.025*
H4B 1.0988 0.6447 0.6921 0.025*
C5 0.8432 (2) 0.5355 (2) 0.77795 (8) 0.0182 (4)
C6 0.7780 (2) 0.5557 (2) 0.83812 (9) 0.0196 (4)
C7 0.8775 (3) 0.5263 (2) 0.89751 (9) 0.0199 (4)
C8 1.0548 (3) 0.4311 (2) 0.90137 (9) 0.0225 (4)
H8 1.1154 0.3915 0.8650 0.027*
C9 1.1417 (3) 0.3948 (3) 0.95825 (9) 0.0262 (4)
H9 1.2593 0.3312 0.9595 0.031*
C10 1.0543 (3) 0.4530 (3) 1.01393 (9) 0.0250 (4)
C11 0.8850 (3) 0.5570 (3) 1.01015 (9) 0.0266 (4)
H11 0.8296 0.6041 1.0464 0.032*
C12 0.7970 (3) 0.5920 (3) 0.95357 (9) 0.0257 (4)
H12 0.6823 0.6605 0.9526 0.031*
H10A 1.065 (4) 0.415 (3) 1.1041 (11) 0.035 (6)*
H10B 1.215 (4) 0.315 (4) 1.0685 (12) 0.042 (7)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0134 (2) 0.0283 (3) 0.0336 (3) 0.0022 (2) 0.0016 (2) −0.0034 (2)
O1 0.0188 (6) 0.0237 (6) 0.0262 (7) 0.0012 (5) −0.0045 (6) −0.0017 (5)
O2 0.0152 (6) 0.0226 (6) 0.0230 (6) 0.0032 (6) 0.0014 (5) 0.0021 (5)
N1 0.0385 (11) 0.0316 (10) 0.0295 (11) 0.0059 (9) −0.0036 (9) 0.0010 (8)
C1 0.0154 (8) 0.0235 (8) 0.0382 (11) 0.0007 (9) −0.0046 (8) −0.0025 (8)
C2 0.0185 (9) 0.0146 (8) 0.0264 (10) −0.0029 (7) −0.0037 (7) 0.0002 (7)
C3 0.0210 (9) 0.0215 (9) 0.0289 (10) 0.0005 (8) 0.0002 (7) −0.0030 (8)
C4 0.0191 (9) 0.0185 (8) 0.0245 (10) 0.0006 (7) 0.0026 (8) 0.0001 (7)
C5 0.0123 (8) 0.0121 (8) 0.0302 (10) −0.0009 (7) −0.0002 (7) −0.0007 (7)
C6 0.0121 (8) 0.0146 (8) 0.0322 (10) −0.0004 (7) 0.0012 (8) 0.0009 (8)
C7 0.0181 (9) 0.0144 (8) 0.0271 (10) −0.0032 (7) 0.0029 (7) 0.0014 (7)
C8 0.0225 (9) 0.0204 (8) 0.0244 (9) 0.0030 (8) 0.0000 (8) −0.0019 (7)
C9 0.0233 (9) 0.0226 (9) 0.0327 (11) 0.0053 (8) −0.0040 (8) −0.0028 (8)
C10 0.0284 (10) 0.0202 (8) 0.0264 (10) −0.0053 (9) −0.0015 (8) 0.0030 (8)
C11 0.0263 (10) 0.0288 (10) 0.0247 (10) −0.0014 (9) 0.0074 (8) −0.0011 (8)
C12 0.0202 (9) 0.0243 (9) 0.0327 (11) 0.0022 (8) 0.0048 (8) 0.0027 (8)

Geometric parameters (Å, º)

S1—C1 1.718 (2) C4—H4A 0.9700
S1—C6 1.7424 (18) C4—H4B 0.9700
O1—C2 1.368 (2) C5—C6 1.376 (3)
O1—C3 1.446 (2) C6—C7 1.464 (3)
O2—C5 1.370 (2) C7—C8 1.402 (3)
O2—C4 1.443 (2) C7—C12 1.406 (3)
N1—C10 1.397 (3) C8—C9 1.385 (3)
N1—H10A 0.87 (3) C8—H8 0.9300
N1—H10B 0.87 (3) C9—C10 1.402 (3)
C1—C2 1.350 (3) C9—H9 0.9300
C1—H1 0.9300 C10—C11 1.385 (3)
C2—C5 1.432 (3) C11—C12 1.382 (3)
C3—C4 1.503 (3) C11—H11 0.9300
C3—H3A 0.9700 C12—H12 0.9300
C3—H3B 0.9700
C1—S1—C6 93.10 (9) O2—C5—C6 123.69 (16)
C2—O1—C3 111.52 (14) O2—C5—C2 122.42 (16)
C5—O2—C4 112.11 (13) C6—C5—C2 113.89 (16)
C10—N1—H10A 117.2 (17) C5—C6—C7 130.51 (16)
C10—N1—H10B 110.5 (17) C5—C6—S1 108.87 (14)
H10A—N1—H10B 115 (2) C7—C6—S1 120.60 (14)
C2—C1—S1 111.33 (15) C8—C7—C12 117.05 (17)
C2—C1—H1 124.3 C8—C7—C6 122.06 (16)
S1—C1—H1 124.3 C12—C7—C6 120.89 (17)
C1—C2—O1 124.39 (17) C9—C8—C7 121.37 (18)
C1—C2—C5 112.78 (17) C9—C8—H8 119.3
O1—C2—C5 122.83 (16) C7—C8—H8 119.3
O1—C3—C4 110.61 (14) C8—C9—C10 120.74 (18)
O1—C3—H3A 109.5 C8—C9—H9 119.6
C4—C3—H3A 109.5 C10—C9—H9 119.6
O1—C3—H3B 109.5 C11—C10—N1 121.13 (19)
C4—C3—H3B 109.5 C11—C10—C9 118.06 (18)
H3A—C3—H3B 108.1 N1—C10—C9 120.76 (19)
O2—C4—C3 111.42 (15) C12—C11—C10 121.27 (18)
O2—C4—H4A 109.3 C12—C11—H11 119.4
C3—C4—H4A 109.3 C10—C11—H11 119.4
O2—C4—H4B 109.3 C11—C12—C7 121.31 (18)
C3—C4—H4B 109.3 C11—C12—H12 119.3
H4A—C4—H4B 108.0 C7—C12—H12 119.3
C6—S1—C1—C2 1.54 (14) C2—C5—C6—S1 −0.29 (19)
S1—C1—C2—O1 178.30 (13) C1—S1—C6—C5 −0.68 (13)
S1—C1—C2—C5 −2.0 (2) C1—S1—C6—C7 177.95 (14)
C3—O1—C2—C1 −164.18 (17) C5—C6—C7—C8 −13.8 (3)
C3—O1—C2—C5 16.1 (2) S1—C6—C7—C8 167.89 (14)
C2—O1—C3—C4 −46.87 (19) C5—C6—C7—C12 166.69 (19)
C5—O2—C4—C3 −44.06 (19) S1—C6—C7—C12 −11.6 (2)
O1—C3—C4—O2 63.54 (19) C12—C7—C8—C9 3.3 (3)
C4—O2—C5—C6 −166.28 (16) C6—C7—C8—C9 −176.21 (18)
C4—O2—C5—C2 12.9 (2) C7—C8—C9—C10 −0.1 (3)
C1—C2—C5—O2 −177.73 (15) C8—C9—C10—C11 −3.7 (3)
O1—C2—C5—O2 2.0 (3) C8—C9—C10—N1 178.79 (19)
C1—C2—C5—C6 1.5 (2) N1—C10—C11—C12 −178.21 (19)
O1—C2—C5—C6 −178.78 (15) C9—C10—C11—C12 4.3 (3)
O2—C5—C6—C7 0.5 (3) C10—C11—C12—C7 −1.1 (3)
C2—C5—C6—C7 −178.74 (17) C8—C7—C12—C11 −2.7 (3)
O2—C5—C6—S1 178.91 (13) C6—C7—C12—C11 176.79 (17)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N1—H10A···O1i 0.88 (3) 2.52 (3) 3.352 (2) 160 (2)
C8—H8···O2 0.93 2.36 2.998 (2) 126

Symmetry code: (i) −x+3/2, −y+1, z+1/2.

Footnotes

Supporting information for this paper is available from the IUCr electronic archives (Reference: LH5708).

References

  1. Altomare, A., Burla, M. C., Camalli, M., Cascarano, G. L., Giacovazzo, C., Guagliardi, A., Moliterni, A. G. G., Polidori, G. & Spagna, R. (1999). J. Appl. Cryst. 32, 115–119.
  2. Cason, C. J. (2004). POV-RAY for Windows Persistence of Vision, Raytracer Pty. Ltd, Victoria, Australia. URL: http://www.povray.org
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  13. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814014093/lh5708sup1.cif

e-70-0o803-sup1.cif (21.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814014093/lh5708Isup2.hkl

e-70-0o803-Isup2.hkl (89.4KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814014093/lh5708Isup3.cml

CCDC reference: 1008614

Additional supporting information: crystallographic information; 3D view; checkCIF report


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