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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2014 Jun 21;70(Pt 7):o800. doi: 10.1107/S1600536814013889

N-Methyl-2-(1-methyl-3-phenyl­prop-2-en-1-yl­idene)hydrazinecarbo­thio­amide

Fillipe Vieira Rocha a, Adelino Vieira de Godoy Netto a, Johannes Beck b, Jörg Daniels b, Adriano Bof de Oliveira c,*
PMCID: PMC4120594  PMID: 25161581

Abstract

In the title compound, C12H15N3S, the mol­ecule deviates slightly from planarity, with a maximum deviation from the mean plane of the non-H atoms of 0.2756 (6) Å for the S atom and a torsion angle for the N—N—C—N fragment of −7.04 (16)°. In the crystal, mol­ecules are linked by N—H⋯S hydrogen-bond inter­actions, forming centrosymmetric dimers. Additionally, one weak intra­molecular N—H⋯N hydrogen-bond inter­action is observed. The crystal packing shows a herringbone arrangement viewed along the c axis.

Keywords: crystal structure

Related literature  

For one of the first reports of the synthesis of thio­semicarbazone derivatives, see: Freund & Schander (1902). For a report of the anti­fungal activity of the title compound, see: Nishimura et al. (1979).graphic file with name e-70-0o800-scheme1.jpg

Experimental  

Crystal data  

  • C12H15N3S

  • M r = 233.33

  • Orthorhombic, Inline graphic

  • a = 10.5832 (2) Å

  • b = 7.9509 (2) Å

  • c = 28.9259 (5) Å

  • V = 2434.00 (9) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.24 mm−1

  • T = 123 K

  • 0.44 × 0.31 × 0.27 mm

Data collection  

  • Nonius KappaCCD diffractometer

  • Absorption correction: multi-scan (Blessing, 1995) T min = 0.904, T max = 0.955

  • 26770 measured reflections

  • 2783 independent reflections

  • 2414 reflections with I > 2σ(I)

  • R int = 0.046

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.031

  • wR(F 2) = 0.080

  • S = 1.05

  • 2783 reflections

  • 205 parameters

  • All H-atom parameters refined

  • Δρmax = 0.27 e Å−3

  • Δρmin = −0.20 e Å−3

Data collection: COLLECT (Nonius, 1998); cell refinement: SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) I, publication_text. DOI: 10.1107/S1600536814013889/bx2460sup1.cif

e-70-0o800-sup1.cif (17.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814013889/bx2460Isup2.hkl

e-70-0o800-Isup2.hkl (136.8KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814013889/bx2460Isup3.cml

CCDC reference: 1008277

Additional supporting information: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N3—HN3⋯N1 0.879 (17) 2.143 (16) 2.5877 (15) 110.7 (13)
N2—HN2⋯S1i 0.862 (18) 2.663 (18) 3.4296 (12) 148.7 (15)

Symmetry code: (i) Inline graphic.

Acknowledgments

We gratefully acknowledge financial support by the German Research Foundation (DFG) through the Collaborative Research Center SFB 813, Chemistry at Spin Centers and by FAPITEC/SE/FUNTEC/CNPq through the PPP Program 04/ 2011. FVR acknowledges FAPESP for the Post-Doctoral scholarship, Proc. No. 2013/20156–5.

supplementary crystallographic information

S1. Comment

Thiosemicarbazone derivatives have a wide range of biological properties. For example, some thiosemicarbazones similar to the title compound show antifungal activity (Nishimura et al., 1979). As part of our study on synthesis and structural chemistry of thiosemicarbazone derivatives from natural products, we report herein the crystal structure of a derivative of the essential oil of cinnamon bark (benzylideneacetone, a methyl derivative of the cinnamaldehyde).

In the crystal structure of the title compound the central N–N–C–N unit is not planar with an torsion angle along N1–N2–C10–N3 of -7.04 (16)° and the maximum deviation from the mean plane of the non-H atoms amounting to 0.2756 (6) Å for S1. The molecule, shows a trans conformation at the C7—C8 and N1—N2 bonds (Fig. 1).

In the crystal the molecules are linked by N—H···S hydrogen bonds interactions forming centrosymmetric dimers. Additionally, one weak N—H···N intramolecular H-interaction is observed.The crystal packing shows a herringbone arrangement viewed along the c-axis.(Fig. 3).

S2. Experimental

Starting materials were commercially available and were used without further purification. The title compound synthesis was adapted to a procedure reported previously (Freund & Schander, 1902). The hydrochloric acid catalyzed reaction, a mixture of benzylideneacetone (10 mmol) and 4-methyl-3-thiosemicarbazide (10 mmol) in ethanol (80 ml) was refluxed for 5 h. After cooling and filtering, the title compound was obtained. Crystals suitable for X-ray diffraction were obtained in ethanol by the slow evaporation of solvent.

S3. Refinement

All hydrogen atoms were localized in a difference density Fourier map. Their positions and isotropic displacement parameters were refined.

Figures

Fig. 1.

Fig. 1.

: The molecular structure of the title compound with labeling and displacement ellipsoids drawn at the 50% probability level.

Fig. 2.

Fig. 2.

: Part of the crystal structure of the title compound showing the inter- and intramolecular hydrogen bonding as dashed lines. Symmetry code: (i) -x + 1, -y, -z.

Fig. 3.

Fig. 3.

: Crystal structure of the title compound viewed along the c-axis. The herringbone pattern of the crystal packing along the a-axis is observed.

Crystal data

C12H15N3S F(000) = 992
Mr = 233.33 Dx = 1.273 Mg m3
Orthorhombic, Pbca Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2ab Cell parameters from 31577 reflections
a = 10.5832 (2) Å θ = 2.9–27.5°
b = 7.9509 (2) Å µ = 0.24 mm1
c = 28.9259 (5) Å T = 123 K
V = 2434.00 (9) Å3 Fragment, yellow
Z = 8 0.44 × 0.31 × 0.27 mm

Data collection

Nonius KappaCCD diffractometer 2783 independent reflections
Radiation source: fine-focus sealed tube, Nonius KappaCCD 2414 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.046
Detector resolution: 9 pixels mm-1 θmax = 27.5°, θmin = 3.3°
CCD rotation images, thick slices scans h = −13→13
Absorption correction: multi-scan (Blessing, 1995) k = −10→10
Tmin = 0.904, Tmax = 0.955 l = −37→37
26770 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080 All H-atom parameters refined
S = 1.05 w = 1/[σ2(Fo2) + (0.0349P)2 + 1.1303P] where P = (Fo2 + 2Fc2)/3
2783 reflections (Δ/σ)max = 0.001
205 parameters Δρmax = 0.27 e Å3
0 restraints Δρmin = −0.20 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.55474 (3) 0.22917 (4) −0.026590 (10) 0.02121 (10)
N1 0.46643 (10) 0.21163 (13) 0.10454 (3) 0.0194 (2)
N2 0.46052 (10) 0.18678 (14) 0.05748 (4) 0.0197 (2)
N3 0.62048 (10) 0.37903 (13) 0.05248 (4) 0.0209 (2)
C1 0.35320 (12) 0.12835 (15) 0.26361 (4) 0.0198 (3)
C2 0.46266 (13) 0.20581 (18) 0.28079 (5) 0.0238 (3)
C3 0.47782 (14) 0.23114 (18) 0.32807 (5) 0.0265 (3)
C4 0.38429 (14) 0.18207 (18) 0.35891 (5) 0.0283 (3)
C5 0.27620 (14) 0.10384 (19) 0.34236 (5) 0.0292 (3)
C6 0.26153 (13) 0.07566 (18) 0.29525 (4) 0.0248 (3)
C7 0.33153 (12) 0.10103 (16) 0.21392 (4) 0.0203 (3)
C8 0.39960 (12) 0.16857 (16) 0.17955 (4) 0.0203 (3)
C9 0.38228 (11) 0.13760 (15) 0.13014 (4) 0.0183 (2)
C10 0.54759 (11) 0.26906 (15) 0.03065 (4) 0.0174 (2)
C11 0.71582 (13) 0.48111 (18) 0.02979 (5) 0.0252 (3)
C12 0.27638 (12) 0.03234 (18) 0.11160 (4) 0.0213 (3)
HN2 0.4267 (16) 0.097 (2) 0.0461 (6) 0.035 (5)*
HN3 0.6058 (15) 0.390 (2) 0.0823 (6) 0.031 (4)*
H2 0.5277 (16) 0.240 (2) 0.2603 (6) 0.034 (4)*
H3 0.5538 (15) 0.286 (2) 0.3389 (6) 0.033 (4)*
H4 0.3962 (15) 0.201 (2) 0.3915 (6) 0.032 (4)*
H5 0.2119 (16) 0.071 (2) 0.3634 (6) 0.040 (5)*
H6 0.1862 (15) 0.020 (2) 0.2843 (5) 0.034 (4)*
H7 0.2640 (15) 0.026 (2) 0.2072 (5) 0.026 (4)*
H8 0.4663 (14) 0.245 (2) 0.1856 (6) 0.026 (4)*
H11A 0.6826 (18) 0.530 (3) 0.0021 (7) 0.059 (6)*
H11B 0.7862 (19) 0.419 (3) 0.0221 (7) 0.052 (6)*
H11C 0.738 (2) 0.572 (3) 0.0489 (7) 0.061 (6)*
H12A 0.2344 (17) 0.088 (2) 0.0863 (6) 0.038 (5)*
H12B 0.3056 (16) −0.073 (2) 0.0991 (6) 0.036 (5)*
H12C 0.2155 (15) 0.005 (2) 0.1358 (6) 0.033 (4)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.02483 (17) 0.02489 (17) 0.01390 (16) −0.00102 (12) 0.00080 (11) 0.00161 (11)
N1 0.0220 (5) 0.0225 (5) 0.0138 (5) −0.0007 (4) −0.0006 (4) 0.0000 (4)
N2 0.0226 (5) 0.0224 (5) 0.0140 (5) −0.0047 (4) −0.0002 (4) 0.0002 (4)
N3 0.0236 (5) 0.0208 (5) 0.0183 (5) −0.0042 (4) 0.0058 (4) −0.0026 (4)
C1 0.0228 (6) 0.0204 (6) 0.0163 (6) 0.0009 (5) 0.0004 (5) 0.0005 (5)
C2 0.0241 (6) 0.0282 (7) 0.0191 (6) −0.0035 (5) 0.0001 (5) 0.0012 (5)
C3 0.0304 (7) 0.0275 (7) 0.0217 (7) −0.0049 (6) −0.0065 (5) 0.0002 (5)
C4 0.0407 (8) 0.0288 (7) 0.0154 (6) −0.0017 (6) −0.0031 (5) 0.0007 (5)
C5 0.0336 (8) 0.0356 (8) 0.0185 (6) −0.0045 (6) 0.0046 (5) 0.0030 (6)
C6 0.0253 (6) 0.0292 (7) 0.0201 (6) −0.0052 (5) 0.0005 (5) 0.0011 (5)
C7 0.0214 (6) 0.0216 (6) 0.0179 (6) −0.0013 (5) −0.0012 (5) −0.0014 (5)
C8 0.0217 (6) 0.0212 (6) 0.0180 (6) −0.0009 (5) −0.0009 (5) −0.0013 (5)
C9 0.0197 (6) 0.0183 (6) 0.0170 (6) 0.0019 (5) 0.0002 (4) 0.0010 (5)
C10 0.0168 (5) 0.0176 (5) 0.0177 (6) 0.0035 (4) 0.0001 (4) 0.0019 (4)
C11 0.0245 (6) 0.0258 (7) 0.0252 (7) −0.0062 (5) 0.0086 (5) −0.0030 (6)
C12 0.0212 (6) 0.0267 (7) 0.0161 (6) −0.0029 (5) 0.0004 (5) 0.0000 (5)

Geometric parameters (Å, º)

S1—C10 1.6875 (12) C4—H4 0.964 (17)
N1—C9 1.2994 (16) C5—C6 1.3896 (19)
N1—N2 1.3769 (14) C5—H5 0.950 (18)
N2—C10 1.3708 (15) C6—H6 0.967 (17)
N2—HN2 0.862 (18) C7—C8 1.3402 (18)
N3—C10 1.3261 (16) C7—H7 0.950 (16)
N3—C11 1.4518 (16) C8—C9 1.4616 (16)
N3—HN3 0.879 (17) C8—H8 0.948 (16)
C1—C6 1.3980 (18) C9—C12 1.4981 (17)
C1—C2 1.4029 (18) C11—H11A 0.96 (2)
C1—C7 1.4716 (17) C11—H11B 0.92 (2)
C2—C3 1.3917 (18) C11—H11C 0.94 (2)
C2—H2 0.949 (18) C12—H12A 0.965 (18)
C3—C4 1.388 (2) C12—H12B 0.964 (18)
C3—H3 0.965 (17) C12—H12C 0.977 (17)
C4—C5 1.387 (2)
C9—N1—N2 117.87 (10) C8—C7—C1 125.58 (12)
C10—N2—N1 117.43 (10) C8—C7—H7 120.2 (9)
C10—N2—HN2 117.2 (11) C1—C7—H7 114.3 (9)
N1—N2—HN2 121.0 (11) C7—C8—C9 126.19 (12)
C10—N3—C11 123.89 (11) C7—C8—H8 121.4 (10)
C10—N3—HN3 115.2 (11) C9—C8—H8 112.4 (10)
C11—N3—HN3 120.8 (11) N1—C9—C8 113.27 (11)
C6—C1—C2 118.21 (12) N1—C9—C12 124.17 (11)
C6—C1—C7 119.15 (11) C8—C9—C12 122.55 (11)
C2—C1—C7 122.64 (11) N3—C10—N2 115.86 (11)
C3—C2—C1 120.46 (12) N3—C10—S1 124.41 (9)
C3—C2—H2 119.3 (10) N2—C10—S1 119.73 (9)
C1—C2—H2 120.3 (10) N3—C11—H11A 110.6 (12)
C4—C3—C2 120.56 (13) N3—C11—H11B 111.8 (13)
C4—C3—H3 120.8 (10) H11A—C11—H11B 108.3 (17)
C2—C3—H3 118.7 (10) N3—C11—H11C 109.8 (13)
C5—C4—C3 119.49 (12) H11A—C11—H11C 105.7 (18)
C5—C4—H4 121.0 (10) H11B—C11—H11C 110.4 (18)
C3—C4—H4 119.5 (10) C9—C12—H12A 111.0 (10)
C4—C5—C6 120.18 (13) C9—C12—H12B 112.4 (10)
C4—C5—H5 119.6 (11) H12A—C12—H12B 105.3 (14)
C6—C5—H5 120.2 (11) C9—C12—H12C 111.2 (10)
C5—C6—C1 121.07 (13) H12A—C12—H12C 110.1 (14)
C5—C6—H6 119.2 (10) H12B—C12—H12C 106.6 (14)
C1—C6—H6 119.7 (10)
N1—N1—N2—C10 0.00 (9) N2—N1—C9—N1 0 (100)
C9—N1—N2—C10 178.27 (11) N1—N1—C9—C8 0.00 (7)
C9—N1—N2—N1 0 (100) N2—N1—C9—C8 178.31 (10)
C6—C1—C2—C3 −0.9 (2) N1—N1—C9—C12 0.000 (19)
C7—C1—C2—C3 178.99 (13) N2—N1—C9—C12 −2.44 (18)
C1—C2—C3—C4 −0.8 (2) C7—C8—C9—N1 −176.06 (12)
C2—C3—C4—C5 1.4 (2) C7—C8—C9—N1 −176.06 (12)
C3—C4—C5—C6 −0.3 (2) C7—C8—C9—C12 4.7 (2)
C4—C5—C6—C1 −1.4 (2) C11—N3—C10—N2 −178.42 (12)
C2—C1—C6—C5 2.0 (2) C11—N3—C10—S1 0.53 (18)
C7—C1—C6—C5 −177.89 (13) N1—N2—C10—N3 −7.04 (16)
C6—C1—C7—C8 168.26 (13) N1—N2—C10—N3 −7.04 (16)
C2—C1—C7—C8 −11.7 (2) N1—N2—C10—S1 173.96 (9)
C1—C7—C8—C9 177.50 (12) N1—N2—C10—S1 173.96 (9)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N3—HN3···N1 0.879 (17) 2.143 (16) 2.5877 (15) 110.7 (13)
N2—HN2···S1i 0.862 (18) 2.663 (18) 3.4296 (12) 148.7 (15)

Symmetry code: (i) −x+1, −y, −z.

Footnotes

Supporting information for this paper is available from the IUCr electronic archives (Reference: BX2460).

References

  1. Blessing, R. H. (1995). Acta Cryst. A51, 33–38. [DOI] [PubMed]
  2. Brandenburg, K. (2006). DIAMOND Crystal Impact GbR, Bonn, Germany.
  3. Freund, M. & Schander, A. (1902). Chem. Ber. 35, 2602–2606.
  4. Nishimura, T., Toku, H., Matsumoto, K., Iwata, M. & Watanabe, T. (1979). Jpn Patent No. 54119029 A.
  5. Nonius (1998). COLLECT Nonius BV, Delft, The Netherlands.
  6. Otwinowski, Z. & Minor, W. (1997). Methods in Enzymology, Vol. 276, Macromolecular Crystallography, Part A, edited by C. W. Carter Jr & R. M. Sweet, pp. 307–326. New York: Academic Press, United States.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, publication_text. DOI: 10.1107/S1600536814013889/bx2460sup1.cif

e-70-0o800-sup1.cif (17.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814013889/bx2460Isup2.hkl

e-70-0o800-Isup2.hkl (136.8KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814013889/bx2460Isup3.cml

CCDC reference: 1008277

Additional supporting information: crystallographic information; 3D view; checkCIF report


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