Abstract
Hemodynamic signals are widely used to infer neural activity in the brain. We tested the hypothesis that hemodynamic signals faithfully report neural activity during voluntary behaviors by measuring cerebral blood volume (CBV) and neural activity in the somatosensory cortex and frontal cortex of head-fixed mice during locomotion. Locomotion induced a large and robust increase in firing rate and gamma-band (40–100 Hz) power in the local field potential in the limb representations in somatosensory cortex, and was accompanied by increases in CBV, demonstrating that hemodynamic signals are coupled with neural activity in this region. However, in the frontal cortex, CBV did not change during locomotion, but firing rate and gamma-band power both increased, indicating a decoupling of neural activity from the hemodynamic signal. These results show that hemodynamic signals are not faithful indicators of the mean neural activity in the frontal cortex during locomotion; thus, the results from fMRI and other hemodynamic imaging methodologies for studying neural processes must be interpreted with caution.
Keywords: frontal cortex, hemodynamic, imaging, locomotion, neurovascular coupling, somatosensory cortex
Introduction
Increases in cortical neural activity are thought to drive a corresponding hemodynamic response, consisting of increased blood flow, oxygenation, and volume (Kim and Ogawa, 2012). This correlation between changes in neural activity and hemodynamic signals is known as neurovascular coupling. Despite the fact that interpreting the results of fMRI and other hemodynamic imaging methods critically depends on having a detailed understanding of neurovascular coupling, our knowledge of the relationship between neural activity and hemodynamic signals is still limited (Logothetis, 2008). Studies have shown that the hemodynamic response is most correlated with gamma-band power in the local field potential (LFP) and, to a lesser extent, the multiunit activity (MUA) (Logothetis et al., 2001; Niessing et al., 2005; Schölvinck et al., 2010).
Several recent studies have challenged the linkage between neural activity and subsequent cerebral hemodynamic response. Electrical stimulation of the forepaw in anesthetized rodents produces a slight increase in the ipsilateral cortical spiking activity, along with a small decrease in total cerebral blood volume (CBV; Devor et al., 2008). Monkeys trained on a fixation task showed an increase in anticipatory blood flow without corresponding changes in neural activity in the visual cortex (Sirotin and Das, 2009), although this result is controversial (Kleinschmidt and Müller, 2010; Handwerker and Bandettini, 2011). Other studies have also found disconnections between neural activity and hemodynamic signals in the brain (Norup Nielsen and Lauritzen, 2001; Ceasar et al., 2003; Jukovskaya et al., 2011; Mishra et al., 2011). These results call for a revisiting of the assumption that cerebral hemodynamic signals reliably report local neural activity.
Knowing whether neurovascular coupling is consistent across different brain regions is especially important for understanding the signals obtained from human fMRI experiments, where most studies target regions outside sensory cortex and frequently involve volitional behaviors. In particular, task-related decreases in hemodynamic signals in frontal cortex (FC) and other nonprimary sensory areas have been interpreted as decreased neural activity in human fMRI experiments (Fox and Raichle, 2007; Buckner et al., 2008). The anticorrelation between hemodynamic signals in frontal areas and other brain regions has been used to argue that the brain is organized into anticorrelated networks (Fox et al., 2005). The interpretation of these experiments hinges on whether cerebral hemodynamic signals in the frontal cortex report local neural activity accurately.
Here, we tested the hypothesis that the cerebral hemodynamic signal faithfully reports local cortical neural activity during voluntary behavior. Locomotion drives robust increases in neural activity in the limb representations in the somatosensory cortex (Chapin and Woodward, 1981; Dombeck et al., 2007) and the motor cortex (Armstrong and Drew, 1984; Dombeck et al., 2009). We measured neural activity and CBV in the somatosensory cortex and frontal cortex of head-fixed mice during voluntary locomotion. We found robust locomotion-driven increases in neural activity in both areas. But only in the somatosensory cortex was the increase in neural activity accompanied by a change in CBV. These results suggest caution when interpreting hemodynamic signals, or lack thereof, in frontal cortex.
Materials and Methods
Animals.
All experimental procedures were approved by the Pennsylvania State University Institutional Animal Care and Use Committee. Twenty-one male C57BL/6J mice (The Jackson Laboratory) that were 4–10 months old were used. Brains were processed for cytochrome oxidase staining (Drew and Feldman, 2009), and the location of somatosensory cortex was then aligned with the imaging windows (Fig. 1B).
Surgical procedures.
All surgeries were performed under isoflurane anesthesia. One self-tapping 3/32 inch #000 screw (J.I. Morris) was implanted into the skull over the olfactory bulb or frontal lobe and connected to the head-bolt via a midline suture using clear cyanoacrylate cement (catalog #32002, Vibra-Tite) and black dental acrylic resin (catalog #1530, Lang Dental Manufacturing Co.) to minimize skull movements. A titanium head bolt was attached to the skull. For intrinsic imaging, large reinforced thinned-skull windows that spanned frontal and parietal cortices were made either bilaterally (N = 6) or unilaterally (N = 2). Detailed window-making procedures are described by Drew et al. (2010). For electrophysiology recordings in a separate set of mice, tungsten stereotrodes were implanted into the FC [N = 10; 0.5 to +2.3 mm anteroposterior (AP) and 0.0 to +2.0 mm mediolateral (ML)] and/or the forelimb (FL)/hindlimb (HL) representation in primary somatosensory cortex (SI; N = 6; −1.0 to +0.5 mm AP and +1.0 to +2.5 mm ML), between 800 and 1000 μm below the pia, targeting the source of the sustained LFP response (Maier et al., 2011).
Experiment setup.
The treadmill had 1° of rotational freedom, and was covered with nonabrasive antislip tape (McMaster-Carr). A rotary encoder (catalog #E7PD-720-118, US Digital) quantified the velocity of the mouse (Fig. 1A; Gao and Drew, 2014). Data were collected using custom software written in LabView, version 8.6 (National Instruments).
LEDs (530 nm; catalog #M530L2-C1, Thorlabs) with a ±10 nm filter (catalog #FB530-10, Thorlabs) were used to illuminate the thinned-skull windows (Bouchard et al., 2009). A CCD camera (Pantera 1M60, Teledyne Dalsa) acquired 256 × 256 pixel images, with a resolution of 27–37 μm/pixel. After habituation, intrinsic data were collected at 3 Hz (for ∼33 min/trial) or 30 Hz (for ∼3 min/trial). Movement-related reflectance changes, measured by covering the thinned-skull window with a piece of clay, were <0.3% peak to peak.
Stereotrodes (50–150 kΩ impedance at 1 kHz) were made from a pair of Teflon-coated tungsten microwires (catalog #795500, A-M Systems). Differential electrical signals were amplified (DAM80, World Precision Instruments), bandpass filtered between 1 Hz and 10 kHz (model 440, Brownlee Precision), and digitized at 30 kHz for 10 min/trial. LFP signals were obtained by bandpass filtering the data between 1 Hz and 300 Hz. MUA was obtained by bandpass filtering the data between 300 Hz and 5 kHz. One electrode in FC did not have an MUA signal and was excluded from the MUA analysis.
Data analysis.
All data analyses were performed in Matlab (MathWorks). All summary data were reported as the mean ± SD. All statistical tests using “ANOVA” referred to one-way ANOVA, unless otherwise specified. All p values were Bonferroni corrected for multiple comparisons.
To identify locomotion events, velocity was first low-pass filtered at 10 Hz. Acceleration was calculated as the first derivative. The absolute value of acceleration was then binarized according to the following equation:
where the threshold acceleration ac was 1 × 10−6 m/s2, at was the instantaneous acceleration at time t, and H(•) was the Heavyside function. We then converted the binarized acceleration signal δ[t] to binary locomotion events, s(t′), which had the same temporal resolution as the simultaneous intrinsic imaging signal. We set s(t′) to 1, representing a locomotion event, if at least 10% of δ[t] within the time spanned by a single intrinsic imaging frame was 1. Otherwise s(t′) = 0, representing a resting event. If two consecutive locomotion events occurred within 1 s, the time elapsed in between was considered as a continuous locomotion period.
For intrinsic images, a 10 s period of rest was used to calculate the baseline image R0 for all trials on the same day (Fig. 1C). Each movie frame was divided by the corresponding pixel in the baseline image to calculate fractional change from the baseline: ΔR/R0 = (R − R0)/R0. ΔR/R0 values were then mean subtracted and low-pass filtered at 1 Hz. Regions of interest (ROIs) were selected to enclose either the FL/HL representation in SI or the FC (Fig. 1B,C). The fractional reflectance change of each ROI was calculated as the average ΔR/R0 of all pixels. When comparing ΔR/R0 values at different durations of locomotion, the baseline was subtracted so that ΔR/R0 = 0 at the initiation of locomotion.
Multitaper power spectra and spectrograms were calculated using the Chronux toolbox (Mitra and Bokil, 2008) with a frequency resolution of 2 Hz. Power spectrograms used a 2 s window (Fig. 2B,E). Locomotion-induced power gain, AP, was calculated from the ratio between the power spectrum density (PSD) during locomotion, Pγ,motion, and the PSD during a same duration of rest, Pγ,rest (Fig. 2C,F), such that APγ = 10 × log10(Pγ,motion/Pγ,rest) dB. Gamma-band power gain, APγ, was then averaged from 40 to 100 Hz, excluding 55–65 Hz.
MUA data were thresholded at 3 SDs, with at least 1 ms of refractory period between consecutive spikes (Drew and Feldman, 2007). The spike train was then convolved with a Gaussian function with a 100 ms SD. To compare behavioral state-dependent neural activity, we selected bouts of locomotion of >2 s, and with at least 3 s of rest immediately beforehand. The firing rate during each bout of locomotion was normalized against the average firing rate between 1 and 3 s before locomotion initiation.
Results
Region-specific hemodynamic responses during locomotion
We imaged the intrinsic optical signal of mice that were head fixed on a spherical treadmill (Fig. 1A) through a thinned-skull window that spanned frontal and parietal cortices (Fig. 1B). Decreases in fractional reflectance from baseline (ΔR/R0) corresponded to increases in CBV. During periods when the mouse was stationary, we observed global, low-frequency (<1 Hz) fluctuations in reflectance (Fig. 1C), which is consistent with previous reports of fluctuations in hemodynamic signals in rodents (Mayhew et al., 1996; Drew et al., 2011) and humans (Biswal et al., 1995).
During locomotion, we observed regionally specific decreases in ΔR/R0. When the mouse initiated voluntary locomotion, we observed a large and fast decrease in ΔR/R0 in the FL/HL representation in the SI (Fig. 1C). The nominal locomotion-induced reflectance decreases in FL/HL areas (approximately −5%) were substantially stronger than spontaneous oscillations (<2% peak to peak), heart rate modulations (<1% peak to peak), or changes in reflectance due to motion (<0.3% peak to peak). However, there was little to no change in reflectance in the FC (Fig. 1C).
Neural activity increases in both sensory and frontal cortices during locomotion
To test whether this region-specific ΔR/R0 response was correlated with local neural activity, we recorded the electrical signals in FC and the FL/HL representations (Fig. 2A). During locomotion, we observed a strong increase in gamma-band power in LFP at both sample electrode sites in FC (Fig. 2B) and the HL area (Fig. 2E). We quantified the behavioral state-dependent gamma-band activity by calculating the PSD during 5 s periods of locomotion or rest (Fig. 2C,F). In both the HL area and FC, the gamma-band power during locomotion was significantly higher than the power during rest (two-way ANOVA: F(1,124) = 152.37, p = 2.5 × 10−23), although the broadband power was significantly higher in the HL area than in FC during locomotion and at rest (two-way ANOVA: F(1,124) = 58.36, p = 5 × 10−12). There was no significant correlation between gamma-band power and caudal-rostral position (regression coefficient, b = 0.07 mm; 95% CI = −0.26 to 0.84; N = 10), which is consistent with the LFP signal being of local origin.
The MUA increased in the FL/HL area and FC during locomotion. At the example site in FC (Fig. 2A), the average firing rate increased by fivefold within 200 ms of locomotion initiation, and remained at 4.3 ± 1.5 times the baseline in the following 2 s of locomotion (ANOVA: F(1,106) = 267.96, p = 8 × 10−31; Fig. 2D). At the example site in the HL area (Fig. 2A), the average firing rate increased by eightfold within 200 ms of locomotion initiation, and remained at 5.5 ± 1.6 times the baseline in the following 2 s of locomotion (ANOVA: F(1,132) = 809.89, p = 3.5 × 10−58; Fig. 2G).
Coupling and decoupling of neural activity to hemodynamic response
We quantified the fractional changes in the intrinsic optical signal, ΔR/R0, and APγ as well as the normalized firing rate immediately before and after locomotion initiation, for different durations of locomotion (Fig. 3). In the FL/HL area, ΔR/R0 decreased by 4.8 ± 1.8% at 3 s of locomotion, and fluctuated approximately −4.5 ± 1.3% at longer locomotion durations (Fig. 3A). At all locomotion durations, ΔR/R0 responses were significantly <0 (t test: maximal p = 4.5 × 10−4; N = 8, from 1 to 10 s), representing a strong CBV increase in response to locomotion. Correspondingly, APγ in the FL/HL area rapidly reached 2.6 ± 1.1 dB by 1 s of locomotion, and further increased and fluctuated ∼4.1 ± 1.6 dB at longer locomotion durations (Fig. 3B). At all locomotion durations, APγ in the FL/HL area was always significantly >0 (t test: maximal p = 0.032; N = 6, from 1 to 10 s). Similarly, the normalized firing rate in the FL/HL area increased to a peak of 3.2 ± 1.4 times the baseline within 300 ms of locomotion initiation, and remained at 2.5 ± 1.0 times the baseline for the 2 s of locomotion, significantly >1 (t test: p = 0.016; N = 6; Fig. 3C). A strong increase in local neural activity paired with a strong local increase in CBV indicates that during locomotion the hemodynamic response is coupled to neural activity in the SI FL/HL area.
In the FC, ΔR/R0 did not change with any duration of locomotion (0.2 ± 0.6%, t test: minimal p = 0.27; N = 8, from 1 to 10 s; Fig. 3A). Nevertheless, at all locomotion durations, APγ responses in the FC were significantly >0 (t test: maximal p = 0.024; N = 10, from 1 to 10 s). The average APγ increased to 1.4 ± 1.1 dB by 1 s of locomotion, and further increased and fluctuated at ∼2.3 ± 1.6 dB at longer durations (Fig. 3B). The normalized firing rate in the FC increased to a peak of 2 ± 1.2 times the baseline within 300 ms of locomotion initiation, and remained at 1.6 ± 0.7 times the baseline for 2 s of locomotion, also significantly >1 (t test: p = 1 × 10−4; N = 9; Fig. 3C). A significant increase of neural activity without a colocalized CBV increase demonstrates neurovascular decoupling in the frontal cortex during locomotion.
To visualize the relationship between neural activity and the hemodynamic response, we plotted the mean change in neural activity versus the mean change in CBV after 5 s of locomotion (Fig. 4). Both the CBV response and neural activity reach a steady state after ∼5 s of locomotion. Although the average APγ in FC and SI FL/HL area are significantly different (ANOVA: F(1,13) = 11.88, p = 0.0043), the distribution of APγ in FC across animals overlaps the distribution of APγ in SI FL/HL areas (Fig. 4A). However, the distributions of ΔR/R0 in FC and SI FL/HL area do not overlap (Fig. 4A). Similarly, comparing the average ΔR/R0 and normalized MUA firing rate, while the distributions of normalized firing rate overlap in FC and SI FL/HL area (Fig. 4B), the distributions of ΔR/R0 do not overlap (Fig. 4B). The difference of normalized firing rate between SI FL/HL area and FC is insignificant after 5 s of locomotion (ANOVA: F(1,12) = 3.85, p = 0.0735), although they both are significantly >1, as stated above. These results show that similar neural activity in FC and SI FL/HL area trigger very different CBV responses, and a simple linear fit cannot capture the response in both FC and sensory cortex.
Discussion
Previous work has shown widespread increases in neural activity during locomotion (Niell and Stryker, 2010; Polack et al., 2013). We observed a significant increase of gamma-band power and firing rate in both the SI FL/HL representations and frontal cortex (Figs. 2, 3B,C). The frontal cortex contains limb-related motor areas (Tennant et al., 2011), which is consistent with the increase in neural activity that we observed. We saw a strong decrease of ΔR/R0 in the FL/HL area, consistent with typical neurovascular coupling. If the hemodynamic signals were proportionally coupled with gamma-band power (Martin et al., 2006; Siero et al., 2013), we would expect to see a decrease in ΔR/R0 of >1% in the frontal cortex, as the gamma-band power increase during running between the FL/HL area and FC differed by a factor of ∼3, and there was a >4% decrease in ΔR/R0 in the FL/HL area. Because we could easily detect spontaneous changes in the ΔR/R0 in the frontal cortex of <1% (Fig. 1C), our failure to see a hemodynamic signal in the frontal cortex is not due to low sensitivity. In addition, CBV has been shown to correlate more closely with neural activity than oxygenation signal (Duong and Kim, 2000; Sheth et al., 2004a; Birn et al., 2009; Moon et al., 2013), so it is unlikely that the decoupling we observed is due to the use of CBV as a metric.
We measured neural activity at infragranular depths, which shows a sustained response in both SI FL/HL and FC, whereas the CBV was measured from the top layer of cortex. Thus, it is possible that the increased neural activity was separate from the hemodynamic changes observed. However, several lines of evidence argue that neural and vascular responses to stimuli increase in parallel across all layers of a cortical column. Multiple studies have shown that stimulus-evoked LFP and MUA responses in sensory cortex show increases across all layers in somatosensory (Di et al., 1990; Einevoll et al., 2007; Herman et al., 2013), auditory (Szymanski et al., 2011), and visual (Xing et al., 2012) cortices. In the frontal cortex, increases in LFP power and neuronal firing rate to vibrissal stimulation in whisker motor cortex have been shown to occur in all layers (Chakrabarti et al., 2008; Quairiaux et al., 2011). Finally, ascending and descending interlaminar excitatory processes have been shown for the motor cortex (Weiler et al., 2008; Shepherd, 2009; Hooks et al., 2011), indicating that our infragranular activity is likely accompanied by an increase in neural activity in the superficial layers of FC.
Measures of CBV with MRI, which does not have the depth limitations of optical imaging, have consistently found that CBV increases in deep layers and surface vessels occur in parallel (Jin and Kim, 2008; Hirano et al., 2011; Kim and Kim, 2011; Herman et al., 2013; Huber et al., 2014). There is a report of increases in CBV in deep layers without an increase in superficial vessels in anesthetized monkeys (Goense et al., 2012), but this effect is associated with strong decreases in neural activity (Shmuel et al., 2006), unlike the increases we see in frontal cortex, and this disassociation of the responses of surface and deep vessels does not take place in awake humans (Huber et al., 2014), suggesting that it might be an artifact of anesthesia. Since cerebral arterioles are electrically coupled, with dilations propagating over millimeters (Iadecola et al., 1997; Chen et al., 2011), and arterial dilation rapidly propagates from the deeper layers of cortex to the surface (Tian et al., 2010), it is unlikely that a dilation of deep vessels would not be reflected in the more superficial vessels that we imaged. Last, optogenetic stimulation of layer V pyramidal neurons in somatosensory cortex evokes a robust increase in CBV in the superficial layers and increases in neural activity across all layers (Vazquez et al., 2013), indicating that neural activity in layer V is sufficient to drive dilation of superficial vessels. These studies support the idea that neural activity in the deep and superficial layers of a cortical region increase together, and that this increase leads to an increase in blood volume throughout the depth of the cortex. Thus, the lack of an observable hemodynamic signal in FC during locomotion is not likely due to methodological issues.
There are several nonexclusive possibilities that could account for the observed decoupling of neural activity from the CBV signal in FC. There could be a threshold relationship, where neural activity below some level has no effect on CBV (Sheth et al., 2004b; Martin et al., 2006), and this level is not reached in the FC during this task. However, because neural activity in FC can reach levels comparable to those seen in the FL/HL regions, this threshold would have to be higher in FC than in the FL/HL representation. A difference in threshold is plausible, as different brain regions have different neurovascular coupling relationships (Devonshire et al., 2012). The vasodilation could depend on signaling from astrocytes (Attwell et al., 2010), which are electrically silent. The actual regulation of blood flow could be performed by projections onto the blood vessels from modulatory nuclei (Hamel, 2006; Drew et al., 2008), whose activity varies during locomotion (Polack et al., 2013), changing the neuromodulatory state of the brain. Though neural and vascular densities covary in the brain (Tsai et al., 2009), there are metabolic and neural density differences between different brain regions (Gusnard and Raichle, 2001) that could impact the regulation of blood flow (Gordon et al., 2008). Another possibility could be that vasoconstrictor input overwhelms any vasodilatory effects of neural activity in FC. Potential sources of vasoconstrictive input include the locus ceruleus (Bekar et al., 2012), or vasoconstrictive, somatostatin-positive interneurons (Cauli et al., 2004) that are highly excited by moderate increases in local neural activity (Adesnik et al., 2012), preventing any arterial dilation in FC. Neither of these potential vasoconstrictive mechanisms would be readily discernable in the LFP or MUA. This is not an exhaustive list of possibilities, but many of the proposed mechanisms entail the idea that cerebral blood flow is controlled by cells whose activity is not reflected in population measures. While the detailed mechanisms linking neural activity to changes in cerebral perfusion require further investigation, our results provide evidence that hemodynamic signals in the frontal cortex of mice do not necessarily follow measures of mean neural activity (LFP and MUA) during locomotion.
Footnotes
This work was supported by an award from the American Heart Association; a Scholar award from the McKnight Endowment Fund for Neuroscience; and National Institutes of Health (NIH) Grants R01NS078168 and R01NS079737 to P.J.D., and American Recovery and Reinvestment Act stimulus funds through NIH Grant NS070701.
The authors declare no competing financial interests.
References
- Adesnik H, Bruns W, Taniguchi H, Huang ZJ, Scanziani M. A neural circuit for spatial summation in visual cortex. Nature. 2012;490:226–231. doi: 10.1038/nature11526. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Armstrong DM, Drew T. Discharges of pyramidal tract and other motor cortical neurones during locomotion in the cat. J Physiol. 1984;346:471–495. doi: 10.1113/jphysiol.1984.sp015036. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Attwell D, Buchan AM, Charpak S, Lauritzen M, Macvicar BA, Newman EA. Glial and neuronal control of brain blood flow. Nature. 2010;468:232–243. doi: 10.1038/nature09613. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bekar LK, Wei HS, Nedergaard M. The locus coeruleus-norepinephrine network optimizes coupling of cerebral blood volume with oxygen demand. J Cereb Blood Flow Metab. 2012;32:2135–2145. doi: 10.1038/jcbfm.2012.115. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Birn RM, Murphy K, Handwerker DA, Bandettini PA. fMRI in the presence of task-correlated breathing variations. Neuroimage. 2009;47:1092–1104. doi: 10.1016/j.neuroimage.2009.05.030. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Biswal B, Yetkin FZ, Haughton VM, Hyde JS. Functional connectivity in the motor cortex of resting human brain using echo-planar MRI. Magn Reson Med. 1995;34:537–541. doi: 10.1002/mrm.1910340409. [DOI] [PubMed] [Google Scholar]
- Bouchard MB, Chen BR, Burgess SA, Hillman EM. Ultra-fast multispectral optical imaging of cortical oxygenation, blood flow, and intracellular calcium dynamics. Opt Express. 2009;17:15670–15678. doi: 10.1364/OE.17.015670. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Buckner RL, Andrews-Hanna JR, Schacter DL. The brain's default network: anatomy, function, and relevance to disease. Ann N Y Acad Sci. 2008;1124:1–38. doi: 10.1196/annals.1440.011. [DOI] [PubMed] [Google Scholar]
- Caesar K, Thomsen K, Lauritzen M. Dissociation of spikes, synaptic activity, and activity-dependent increments in rat cerebellar blood flow by tonic synaptic inhibition. Proc Natl Acad Sci U S A. 2003;100:16000–16005. doi: 10.1073/pnas.2635195100. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cauli B, Tong XK, Rancillac A, Serluca N, Lambolez B, Rossier J, Hamel E. Cortical GABA interneurons in neurovascular coupling: relays for subcortical vasoactive pathways. J Neurosci. 2004;24:8940–8949. doi: 10.1523/JNEUROSCI.3065-04.2004. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chakrabarti S, Zhang M, Alloway KD. MI neuronal responses to peripheral whisker stimulation: relationship to neuronal activity in si barrels and septa. J Neurophysiol. 2008;100:50–63. doi: 10.1152/jn.90327.2008. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chapin JK, Woodward DJ. Modulation of sensory responsiveness of single somatosensory cortical cells during movement and arousal behaviors. Exp Neurol. 1981;72:164–178. doi: 10.1016/0014-4886(81)90135-7. [DOI] [PubMed] [Google Scholar]
- Chen BR, Bouchard MB, McCaslin AF, Burgess SA, Hillman EM. High-speed vascular dynamics of the hemodynamic response. Neuroimage. 2011;54:1021–1030. doi: 10.1016/j.neuroimage.2010.09.036. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Devonshire IM, Papadakis NG, Port M, Berwick J, Kennerley AJ, Mayhew JE, Overton PG. Neurovascular coupling is brain region-dependent. Neuroimage. 2012;59:1997–2006. doi: 10.1016/j.neuroimage.2011.09.050. [DOI] [PubMed] [Google Scholar]
- Devor A, Hillman EM, Tian P, Waeber C, Teng IC, Ruvinskaya L, Shalinsky MH, Zhu H, Haslinger RH, Narayanan SN, Ulbert I, Dunn AK, Lo EH, Rosen BR, Dale AM, Kleinfeld D, Boas DA. Stimulus-induced changes in blood flow and 2-deoxyglucose uptake dissociate in ipsilateral somatosensory cortex. J Neurosci. 2008;28:14347–14357. doi: 10.1523/JNEUROSCI.4307-08.2008. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Di S, Baumgartner C, Barth DS. Laminar analysis of extracellular field potentials in rat vibrissa/barrel cortex. J Neurophysiol. 1990;63:832–840. doi: 10.1152/jn.1990.63.4.832. [DOI] [PubMed] [Google Scholar]
- Dombeck DA, Khabbaz AN, Collman F, Adelman TL, Tank DW. Imaging large-scale neural activity with cellular resolution in awake, mobile mice. Neuron. 2007;56:43–57. doi: 10.1016/j.neuron.2007.08.003. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dombeck DA, Graziano MS, Tank DW. Functional clustering of neurons in motor cortex determined by cellular resolution imaging in awake behaving mice. J Neurosci. 2009;29:13751–13760. doi: 10.1523/JNEUROSCI.2985-09.2009. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Drew PJ, Feldman DE. Representation of moving wavefronts of whisker deflection in rat somatosensory cortex. J Neurophysiol. 2007;98:1566–1580. doi: 10.1152/jn.00056.2007. [DOI] [PubMed] [Google Scholar]
- Drew PJ, Feldman DE. Intrinsic signal imaging of deprivation-induced contraction of whisker representations in rat somatosensory cortex. Cereb Cortex. 2009;19:331–348. doi: 10.1093/cercor/bhn085. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Drew PJ, Duyn JH, Golanov E, Kleinfeld D. Finding coherence in spontaneous oscillations. Nat Neurosci. 2008;11:991–993. doi: 10.1038/nn0908-991. [DOI] [PubMed] [Google Scholar]
- Drew PJ, Shih AY, Driscoll JD, Knutsen PM, Blinder P, Davalos D, Akassoglou K, Tsai PS, Kleinfeld D. Chronic optical access through a polished and reinforced thinned skull. Nat Methods. 2010;7:981–984. doi: 10.1038/nmeth.1530. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Drew PJ, Shih AY, Kleinfeld D. Fluctuating and sensory-induced vasodynamics in rodent cortex extend arteriole capacity. Proc Natl Acad Sci U S A. 2011;108:8473–8478. doi: 10.1073/pnas.1100428108. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Duong TQ, Kim SG. In vivo MR measurements of regional arterial and venous blood volume fractions in intact rat brain. Magn Reson Med. 2000;43:393–402. doi: 10.1002/(SICI)1522-2594(200003)43:3<393::AID-MRM11>3.0.CO;2-K. [DOI] [PubMed] [Google Scholar]
- Einevoll GT, Pettersen KH, Devor A, Ulbert I, Halgren E, Dale AM. Laminar population analysis: estimating firing rates and evoked synaptic activity from multielectrode recordings in rat barrel cortex. J Neurophysiol. 2007;97:2174–2190. doi: 10.1152/jn.00845.2006. [DOI] [PubMed] [Google Scholar]
- Fox MD, Raichle ME. Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging. Nat Rev Neurosci. 2007;8:700–711. doi: 10.1038/nrn2201. [DOI] [PubMed] [Google Scholar]
- Fox MD, Snyder AZ, Vincent JL, Corbetta M, Van Essen DC, Raichle ME. The human brain is intrinsically organized into dynamic, anticorrelated functional networks. Proc Natl Acad Sci U S A. 2005;102:9673–9678. doi: 10.1073/pnas.0504136102. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gao YR, Drew PJ. Determination of vessel cross-sectional area by thresholding in radon space. J Cereb Blood Flow Metab. 2014;34:1180–1187. doi: 10.1038/jcbfm.2014.67. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Goense J, Merkle H, Logothetis NK. High-resolution fMRI reveals laminar differences in neurovascular coupling between positive and negative BOLD responses. Neuron. 2012;76:629–639. doi: 10.1016/j.neuron.2012.09.019. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gordon GR, Choi HB, Rungta RL, Ellis-Davies GC, MacVicar BA. Brain metabolism dictates the polarity of astrocyte control over arterioles. Nature. 2008;456:745–749. doi: 10.1038/nature07525. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gusnard DA, Raichle ME. Searching for a baseline: functional imaging and the resting human brain. Nat Rev Neurosci. 2001;2:685–694. doi: 10.1038/35094500. [DOI] [PubMed] [Google Scholar]
- Hamel E. Perivascular nerves and the regulation of cerebrovascular tone. J Appl Physiol (1985) 2006;100:1059–1064. doi: 10.1152/japplphysiol.00954.2005. [DOI] [PubMed] [Google Scholar]
- Handwerker DA, Bandettini PA. Hemodynamic signals not predicted? Not so: a comment on Sirotin and Das (2009) Neuroimage. 2011;55:1409–1412. doi: 10.1016/j.neuroimage.2010.04.037. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Herman P, Sanganahalli BG, Blumenfeld H, Rothman DL, Hyder F. Quantitative basis for neuroimaging of cortical laminae with calibrated functional MRI. Proc Natl Acad Sci U S A. 2013;110:15115–15120. doi: 10.1073/pnas.1307154110. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hirano Y, Stefanovic B, Silva AC. Spatiotemporal evolution of the functional magnetic resonance imaging response to ultrashort stimuli. J Neurosci. 2011;31:1440–1447. doi: 10.1523/JNEUROSCI.3986-10.2011. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hooks BM, Hires SA, Zhang YX, Huber D, Petreanu L, Svoboda K, Shepherd GM. Laminar analysis of excitatory local circuits in vibrissal motor and sensory cortical areas. PLoS Biol. 2011;9:e1000572. doi: 10.1371/journal.pbio.1000572. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Huber L, Goense J, Kennerley AJ, Ivanov D, Krieger SN, Lepsien J, Trampel R, Turner R, Möller HE. Investigation of the neurovascular coupling in positive and negative BOLD responses in human brain at 7T. Neuroimage. 2014;97:349–362. doi: 10.1016/j.neuroimage.2014.04.022. [DOI] [PubMed] [Google Scholar]
- Iadecola C, Yang G, Ebner TJ, Chen G. Local and propagated vascular responses evoked by focal synaptic activity in cerebellar cortex. J Neurophysiol. 1997;78:651–659. doi: 10.1152/jn.1997.78.2.651. [DOI] [PubMed] [Google Scholar]
- Jin T, Kim SG. Cortical layer-dependent dynamic blood oxygenation, cerebral blood flow and cerebral blood volume responses during visual stimulation. Neuroimage. 2008;43:1–9. doi: 10.1016/j.neuroimage.2008.06.029. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jukovskaya N, Tiret P, Lecoq J, Charpak S. What does local functional hyperemia tell about local neuronal activation? J Neurosci. 2011;31:1579–1582. doi: 10.1523/JNEUROSCI.3146-10.2011. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kim SG, Ogawa S. Biophysical and physiological origins of blood oxygenation level-dependent fMRI signals. J Cereb Blood Flow Metab. 2012;32:1188–1206. doi: 10.1038/jcbfm.2012.23. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kim T, Kim SG. Temporal dynamics and spatial specificity of arterial and venous blood volume changes during visual stimulation: implication for BOLD quantification. J Cereb Blood Flow Metab. 2011;31:1211–1222. doi: 10.1038/jcbfm.2010.226. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kleinschmidt A, Müller NG. The blind, the lame, and the poor signals of brain function—a comment on Sirotin and Das (2009) Neuroimage. 2010;50:622–625. doi: 10.1016/j.neuroimage.2009.12.075. [DOI] [PubMed] [Google Scholar]
- Logothetis NK. What we can do and what we cannot do with fMRI. Nature. 2008;453:869–878. doi: 10.1038/nature06976. [DOI] [PubMed] [Google Scholar]
- Logothetis NK, Pauls J, Augath M, Trinath T, Oeltermann A. Neurophysiological investigation of the basis of the fMRI signal. Nature. 2001;412:150–157. doi: 10.1038/35084005. [DOI] [PubMed] [Google Scholar]
- Maier A, Aura CJ, Leopold DA. Infragranular sources of sustained local field potential responses in macaque primary visual cortex. J Neurosci. 2011;31:1971–1980. doi: 10.1523/JNEUROSCI.5300-09.2011. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Martin C, Martindale J, Berwick J, Mayhew J. Investigating neural-hemodynamic coupling and the hemodynamic response function in the awake rat. Neuroimage. 2006;32:33–48. doi: 10.1016/j.neuroimage.2006.02.021. [DOI] [PubMed] [Google Scholar]
- Mayhew JE, Askew S, Zheng Y, Porrill J, Westby GW, Redgrave P, Rector DM, Harper RM. Cerebral vasomotion: a 0.1-Hz oscillation in reflected light imaging of neural activity. Neuroimage. 1996;4:183–193. doi: 10.1006/nimg.1996.0069. [DOI] [PubMed] [Google Scholar]
- Mishra AM, Ellens DJ, Schridde U, Motelow JE, Purcaro MJ, DeSalvo MN, Enev M, Sanganahalli BG, Hyder F, Blumenfeld H. Where fMRI and electrophysiology agree to disagree: corticothalamic and striatal activity patterns in the WAG/Rij rat. J Neurosci. 2011;31:15053–15064. doi: 10.1523/JNEUROSCI.0101-11.2011. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mitra P, Bokil H. Observed brain dynamics. Oxford, UK: Oxford UP; 2008. [Google Scholar]
- Moon CH, Fukuda M, Kim SG. Spatiotemporal characteristics and vascular sources of neural-specific and -nonspecific fMRI signals at submillimeter columnar resolution. Neuroimage. 2013;64:91–103. doi: 10.1016/j.neuroimage.2012.08.064. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Niell CM, Stryker MP. Modulation of visual responses by behavioral state in mouse visual cortex. Neuron. 2010;65:472–479. doi: 10.1016/j.neuron.2010.01.033. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Niessing J, Ebisch B, Schmidt KE, Niessing M, Singer W, Galuske RA. Hemodynamic signals correlate tightly with synchronized gamma oscillations. Science. 2005;309:948–951. doi: 10.1126/science.1110948. [DOI] [PubMed] [Google Scholar]
- Norup Nielsen A, Lauritzen M. Coupling and uncoupling of activity-dependent increases of neuronal activity and blood flow in rat somatosensory cortex. J Physiol. 2001;533:773–785. doi: 10.1111/j.1469-7793.2001.00773.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Polack PO, Friedman J, Golshani P. Cellular mechanisms of brain state-dependent gain modulation in visual cortex. Nat Neurosci. 2013;16:1331–1339. doi: 10.1038/nn.3464. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Quairiaux C, Mégevand P, Kiss JZ, Michel CM. Functional development of large-scale sensorimotor cortical networks in the brain. J Neurosci. 2011;31:9574–9584. doi: 10.1523/JNEUROSCI.5995-10.2011. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schölvinck ML, Maier A, Ye FQ, Duyn JH, Leopold DA. Neural basis of global resting-state fMRI activity. Proc Natl Acad Sci U S A. 2010;107:10238–10243. doi: 10.1073/pnas.0913110107. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Shepherd GM. Intracortical cartography in an agranular area. Front Neurosci. 2009;3:337–343. doi: 10.3389/neuro.01.030.2009. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sheth SA, Nemoto M, Guiou M, Walker M, Pouratian N, Hageman N, Toga AW. Columnar specificity of microvascular oxygenation and volume responses: implications for functional brain mapping. J Neurosci. 2004a;24:634–641. doi: 10.1523/JNEUROSCI.4526-03.2004. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sheth SA, Nemoto M, Guiou M, Walker M, Pouratian N, Toga AW. Linear and nonlinear relationships between neuronal activity, oxygen metabolism, and hemodynamic responses. Neuron. 2004b;42:347–355. doi: 10.1016/S0896-6273(04)00221-1. [DOI] [PubMed] [Google Scholar]
- Shmuel A, Augath M, Oeltermann A, Logothetis NK. Negative functional MRI response correlates with decreases in neuronal activity in monkey visual area V1. Nat Neurosci. 2006;9:569–577. doi: 10.1038/nn1675. [DOI] [PubMed] [Google Scholar]
- Siero JC, Hermes D, Hoogduin H, Luijten PR, Petridou N, Ramsey NF. BOLD consistently matches electrophysiology in humansensorimotor cortex at increasing movement rates: a combined7T fMRI and ECoG study on neurovascular coupling. J Cereb Blood Flow Metab. 2013;33:1448–1456. doi: 10.1038/jcbfm.2013.97. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sirotin YB, Das A. Anticipatory haemodynamic signals in sensory cortex not predicted by local neuronal activity. Nature. 2009;457:475–479. doi: 10.1038/nature07664. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Szymanski FD, Rabinowitz NC, Magri C, Panzeri S, Schnupp JW. The laminar and temporal structure of stimulus information in the phase of field potentials of auditory cortex. J Neurosci. 2011;31:15787–15801. doi: 10.1523/JNEUROSCI.1416-11.2011. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tennant KA, Adkins DL, Donlan NA, Asay AL, Thomas N, Kleim JA, Jones TA. The organization of the forelimb representation of the C57BL/6 mouse motor cortex as defined by intracortical microstimulation and cytoarchitecture. Cereb Cortex. 2011;21:865–876. doi: 10.1093/cercor/bhq159. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tian P, Teng IC, May LD, Kurz R, Lu K, Scadeng M, Hillman EM, De Crespigny AJ, D'Arceuil HE, Mandeville JB, Marota JJ, Rosen BR, Liu TT, Boas DA, Buxton RB, Dale AM, Devor A. Cortical depth-specific microvascular dilation underlies laminar differences in blood oxygenation level-dependent functional MRI signal. Proc Natl Acad Sci U S A. 2010;107:15246–15251. doi: 10.1073/pnas.1006735107. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tsai PS, Kaufhold JP, Blinder P, Friedman B, Drew PJ, Karten HJ, Lyden PD, Kleinfeld D. Correlations of neuronal and microvascular densities in murine cortex revealed by direct counting and colocalization of nuclei and vessels. J Neurosci. 2009;29:14553–14570. doi: 10.1523/JNEUROSCI.3287-09.2009. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Vazquez AL, Fukuda M, Crowley JC, Kim SG. Neural and hemodynamic responses elicited by forelimb- and photo-stimulation in channelrhodopsin-2 mice: insights into the hemodynamic point spread function. Cereb Cortex. 2013 doi: 10.1093/cercor/bht147. doi: 10.1093/cercor/bht147. Advance online publication. Retrieved July 15, 2014. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Weiler N, Wood L, Yu J, Solla SA, Shepherd GM. Top-down laminar organization of the excitatory network in motor cortex. Nat Neurosci. 2008;11:360–366. doi: 10.1038/nn2049. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Xing D, Yeh CI, Burns S, Shapley RM. Laminar analysis of visually evoked activity in the primary visual cortex. Proc Natl Acad Sci U S A. 2012;109:13871–13876. doi: 10.1073/pnas.1201478109. [DOI] [PMC free article] [PubMed] [Google Scholar]