Table III.
Structure/Model | Docking method | EF at 1% db | EF at 5% db | EF at 25% db | % db to find 25% seeds | Yield 25% db | EFmax | % db EFmax occurred | ROC AUC | AUC at 25% db | α=20 | BEDROC α=53.6 | α=100 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2RH1 | Glide4.01 | 5.83 | 5.30 | 3.08 | 4.74 | 77.19 | 6.80 | 1.81 | 0.88 | 0.11 | 0.72 | 0.75 | 0.74 |
AutoDock4.0 | 3.89 | 1.06 | 1.75 | 11.74 | 43.86 | 0.68 | 5.18 | 0.73 | 0.05 | ||||
eHiTS6.2 | 1.94 | 1.77 | 1.82 | 13.54 | 45.61 | 3.89 | 0.45 | 0.74 | 0.05 | ||||
3D4S | Glide4.01 | 6.12 | 6.66 | 3.17 | 4.05 | 79.31 | 7.65 | 0.22 | 0.89 | 0.11 | 0.77 | 0.80 | 0.79 |
3P0G | Glide4.01 | 5.74 | 3.33 | 2.69 | 7.21 | 67.24 | 7.66 | 0.68 | 0.81 | 0.08 | 0.50 | 0.52 | 0.62 |
| |||||||||||||
CM1 | Glide4.01 | 5.83 | 3.53 | 2.87 | 6.77 | 71.93 | 7.77 | 1.35 | 0.83 | 0.08 | 0.50 | 0.52 | 0.58 |
AutoDock4.0 | 0.00 | 1.77 | 2.17 | 13.77 | 54.39 | 2.59 | 1.35 | 0.76 | 0.04 | ||||
eHiTS6.2 | 0.00 | 0.71 | 1.75 | 14.67 | 43.86 | 2.03 | 15.58 | 0.72 | 0.04 | ||||
CM2 | Glide4.01 | 7.66 | 4.52 | 2.90 | 5.63 | 72.41 | 7.66 | 1.35 | 0.86 | 0.09 | 0.61 | 0.72 | 0.83 |
AutoDock4.0 | 3.83 | 2.09 | 2.48 | 11.49 | 62.07 | 3.83 | 0.90 | 0.81 | 0.06 | ||||
eHiTS6.2 | 0.00 | 1.04 | 2.14 | 12.16 | 53.45 | 2.30 | 18.02 | 0.73 | 0.05 | ||||
CM3 | Glide4.01 | 0.00 | 1.41 | 1.54 | 17.61 | 38.60 | 1.94 | 0.90 | 0.61 | 0.04 | 0.20 | 0.15 | 0.11 |
AutoDock4.0 | 1.94 | 1.41 | 1.82 | 14.90 | 45.61 | 2.59 | 1.35 | 0.75 | 0.05 | ||||
eHiTS6.2 | 0.00 | 1.06 | 1.26 | 23.25 | 31.58 | 1.79 | 2.93 | 0.65 | 0.03 | ||||
CM4 | Glide4.01 | 1.91 | 1.39 | 2.90 | 2.70 | 72.41 | 3.42 | 10.59 | 0.82 | 0.07 | 0.34 | 0.19 | 0.13 |
AutoDock4.0 | 1.91 | 1.39 | 2.34 | 12.61 | 58.62 | 7.66 | 0.23 | 0.78 | 0.05 | ||||
eHiTS6.2 | 1.91 | 1.74 | 1.52 | 16.89 | 37.93 | 3.06 | 1.13 | 0.65 | 0.04 | ||||
AM1 | Glide4.01 | 1.91 | 0.70 | 1.31 | 20.27 | 32.76 | 3.83 | 0.45 | 0.65 | 0.03 | 0.14 | 0.17 | 0.22 |
AutoDock4.0 | 1.91 | 1.04 | 1.03 | 22.75 | 25.86 | 1.91 | 0.90 | 0.61 | 0.03 | ||||
eHiTS6.2 | 0.00 | 0.35 | 0.97 | 25.90 | 24.14 | 1.42 | 37.61 | 0.60 | 0.03 | ||||
AM3 | Glide4.01 | 0.00 | 2.44 | 2.07 | 10.36 | 51.72 | 2.55 | 4.73 | 0.72 | 0.06 | 0.28 | 0.20 | 0.14 |
AutoDock4.0 | 1.91 | 1.74 | 2.34 | 10.81 | 58.62 | 2.83 | 14.64 | 0.78 | 0.07 | ||||
eHiTS6.2 | 0.00 | 0.35 | 1.45 | 17.57 | 36.21 | 1.81 | 32.43 | 0.69 | 0.03 |