Abstract
The paper describes two-dimensional solid state NMR experiments that use powdered dephased anti-phase coherence (γ preparation) to encode chemical shifts in the indirect dimension. Both components of this chemical shift encoded gamma-prepared states can be refocused into inphase coherence by a recoupling element. This helps to achieve sensitivity enhancement in 2D NMR experiments by quadrature detection. The powder dependence of the gamma-prepared states allows for manipulating them by suitable insertion of delays in the recoupling periods. This helps to design experiments that suppress diagonal peaks in 2D spectra, leading to improved resolution. We describe some new phase modulated heteronuclear and homonuclear recoupling pulse sequences that simplify the implementation of the described experiments based on γ prepared states. Recoupling in the heteronuclear spin system is achieved by matching the difference in the amplitude of the sine/cosine modulated phase on the two rf-channels to the spinning frequency while maintaining the same power on the two rf-channels.
Keywords: Gamma preparation, Phase matching, Dipolar recoupling, Coherence transfer
1. Introduction
Nuclear magnetic resonance (NMR) spectroscopy opens up the possibility of studying insoluble protein structures such as membrane proteins, fibrils, and extracellular matrix proteins which are difficult to analyze using conventional atomic-resolution structure determination methods, including liquid-state NMR and X-ray crystallography [1–5]. Sensitivity and resolution is a critical issue in all these applications. The most advanced solid-state NMR equipment and techniques still requires hours and days of signal averaging for a simple two-dimensional (2D) spectroscopy of peptides and proteins in a noncrystalline solid form. The resolution of solid state NMR experiments is limited by increased line widths of the powder samples. The present paper describes some new methodology development aimed at making improvements in resolution and sensitivity.
In [6], we addressed a fundamental problem of coherence transfer in solid-state NMR of “powder” samples. We showed how to design experiments that are insensitive to orientations of the crystallite in a powder sample and simultaneously transfer both components of transverse magnetization of spin S to a coupled spin I, in the mixing step of the 2D solid state NMR experiment under magic angle spinning. Simultaneous transfer of both components of the magnetization has been used to develop sensitivity enhanced experiments widely used in liquid-state NMR [7–10]. Pulse sequences for simultaneous transfer of transverse component of magnetization have recently appeared in solid state NMR literature [11]. Transfer schemes presented in [6] are independent of the orientations of the crystallite in a powder sample.
In this paper [13], we show how the powdered dephased coherences (γ prepared states) can be used to develop recoupling experiments with improved resolution and sensitivity. The peaks in the 2D spectrum arising from the chemical shifts encoded on the γ prepared states are shifted in the indirect dimension by the rotor frequency (given that t1 increments sample the rotor period). The NMR signal arising from these γ prepared states can be manipulated by inserting half rotor period delays in these experiments or suitable phase cycling as described in the paper. In principle, this makes it possible to retain only the peaks arising from the γ prepared states. We describe some methods for achieving this in the paper. These methods could aid in the chemical shift assignment of large molecules, especially for resolving cross-peaks close to the diagonal.
The paper is organized as follows. In Section 2, we describe some homonuclear recoupling experiments that recouple dipolar coupled spins under MAS experiments. These experiments are broadband and robust to rf-inhomogeneity and form the building block for preparation and refocusing of γ prepared states. This work extends recently developed techniques for broadband homonuclear recoupling as reported in the [15–17]. In Section 3, we show how these recoupling blocks can be used to prepare a powder dephased antiphase coherence and refocus both components of the chemical shift encoded γ prepared states (following t1 evolution) into inphase coherence. In Section 3.1, we show how to design 2D experiments that only retain correlations encoded on the γ prepared states. This then helps to generate 2D spectra, where diagonals are in principle completely suppressed leading to improved resolution. In Section 4, we describe these methods in the context of heteronuclear experiments. In the context of heteronuclear spins, the recoupling is achieved by matching the phase modulations on the two rf-channels (analogous to Hartmann-Hahn matching of the rf-power commonly seen in heteronuclear recoupling experiments). Section 5 describes experimental verification of the proposed techniques. The results are discussed in the conclusion Section 6.
In a standard 2D NMR experiment [18], the initial coherence on spin S evolves under the chemical shift ωS for time t1 to Sx → Sxcos(ωSt1) + Sysin(ωSt1). During the mixing step, the x magnetization on spin S is transferred to a coupled spin I, and assuming perfect transfer, Sx → Ix, the spin I precesses under its chemical shift, i.e.,
The precession is recorded and the experiment is repeated by incrementing t1, finally leading to a two dimensional signal in t1 and t2 that encodes for ωI and ωS. Simultaneous transfer of both components of the transverse magnetization during the mixing step, i.e.,
is desirable as it enhances the sensitivity of the experiment by a factor of . Such sensitivity enhanced experiments are performed routinely in liquid-state NMR [7–10]. The simultaneous transfer of both transverse components of the magnetization is usually achieved by synthesizing an isotropic Hamiltonian or a Unitary propagator,
However in solid state NMR experiments under MAS, the dispersion in the coupling strengths arising due to the orientation dependence of the couplings makes the task of synthesizing Uiso for all coupled spin pairs (independent of the orientation) a non-trivial task. This problem can be alleviated by suitably transforming the initial magnetization on spin S, before the t1 evolution period. This is called γ preparation, as the transformed state depends on angle γ that denotes the rotation of the crystallite around the rotor axis. This transformed state is then made to evolve under the chemical shift of spin S. Because of the initial preparation, it becomes possible to simultaneously transfer both components of the transverse magnetization of spin S after the t1 precession. The paper proposes many new techniques for creation, manipulation and application of these γ prepared states for design of multidimensional NMR experiments.
Notation
Let Sα(β, γ) denote the rotation of operator Sα around the axis β by angle γ, where α, β ∈ {x, y, z}, i.e., Sα(β, γ) = exp(−iγSβ)Sαexp(iγSβ). For example Sx(z, γ) = Sxcosγ + Sysinγ. It is straightforward to verify relations of the following kind
It also follows from definition that for any unitary transformation U,
where SUαU′(UβU′, γ), denotes rotation of operator USαU′ around USβU′.
Let the unit vectors l, m, n constitute a right handed coordinate system (l × m = n). Then
(1) |
and
(2) |
are used to denote the zero quantum and multiple (double) quantum operators.
2. Phase alternating modulated recoupling
Consider two homonuclear spins I and S under magic angle spinning condition [19]. In a rotating frame, rotating with both the spins at their common Larmor frequency, the Hamiltonian of the spin system takes the form
(3) |
where the operator Fx = Ix + Sx, and ωI(t) and ωS(t) represent the chemical shift for the spins I and S respectively and ωIS(t) represents the time varying couplings between the spins under magic-angle spinning. These interactions may be expressed as a Fourier series
(4) |
where ωr is the spinning frequency (in angular units), while the coefficients ωλ(λ = I, S, IS) reflect the dependence on the physical parameters like the isotropic chemical shift, anisotropic chemical shift, the dipole-dipole coupling constant and through this the internuclear distance [22].
The term I · S in (3), commutes with the rf-Hamiltonian, and in the absence of the chemical shifts, it averages to zero under MAS. We will, therefore, drop this term in the subsequent treatment, where we truncate the chemical shift Hamiltonian with a strong rf-field.
Consider the rf irradiation on homonuclear spin pair whose amplitude is chosen as and the offset Δω(t)
(5) |
This offset is implemented as a phase modulation
(6) |
In the modulation frame, which transforms the density matrix from
the rf-Hamiltonian takes the form
(7) |
where C is in the angular frequency units and we choose C ≫ ωI(t), ωS(t), ωIS(t), ωr. In the interaction frame of the irradiation along x-axis, with the strength C, the chemical shifts of the spins are averaged out. The coupling Hamiltonian of the spin system takes the form
(8) |
and the rf-Hamiltonian of the spin system transforms to
(9) |
which averages over a period τc = 2π/C to
(10) |
We have therefore an effective field along the direction m, where m = −sin θ ŷ − cos θ ẑ. For θ = 0, we have an effective rf-field along the −z direction. For , we have an effective field along −y direction.
Now, transforming into the interaction frame of the rf-Hamiltonian , we only retain terms that give static contribution to the effective Hamiltonian, i.e., terms oscillating with frequency C are dropped and the residual Hamiltonian takes the form (neglecting the terms oscillating at frequency 2ωr as they are not recoupled)
(11) |
which averages to
(12) |
where , where is the dipole coupling constant and n is the effective direction
and m × n = x. From (2), we have prepared an effective Hamiltonian .
This cosine modulated pulse sequence is broadband as a large value of C averages out the chemical shift [15]. The high power cosine modulated pulse sequence is sensitive to rf-inhomogeneity. Let ε denote the inhomogeneity parameter. Then, rewriting Hrf in (7) gives
(13) |
In the interaction frame of irradiation along x-axis with strength C, the rf-Hamiltonian averages to , where denotes a term of order . For large C, the factor εCFx significantly reduces the recoupling.
In [17], we presented a method to eliminate this effect of the rf-inhomogeneity by simply phase alternating every units of time, by changing
We called this a phase alternating pulse sequence.
The effective Hamiltonian produced on the alternate phase is .
For , the resulting Hamiltonian over 2 τc is
The resulting Hamiltonian is linear in the inhomogeneity parameter, ε [20]. However, compared to CMRR, the effect of inhomogeneity is reduced by (m′, m″, n′ are vectors in the m-n plane).
In [17], we chose in (5) and the resulting pulse sequence is called PAMORE (Phase Alternating MOdulated REcoupling). The effective Hamiltonian it produces is .
By choosing θ = 0, we obtain the effective Hamiltonian . The resulting experiment is called Z-PAMORE (signifying recoupling with an effective z field). When we choose θ = π, we obtain the effective Hamiltonian . We call this experiment Z̄-PAMORE. Figs. 1 and 4 show the rf-phase modulations and transfer using the PAMORE and Z-PAMORE recoupling blocks.
3. Gamma-preparation
Consider the Hamiltonians,
(14) |
and
(15) |
that can be prepared by the Z-PAMORE and Z̄-PAMORE experiment respectively. Note
Therefore these Hamiltonians can also be prepared by the PAMORE experiment by nesting with pulses. Now, consider the following experiment,
(16) |
where, , represents evolution , for a nominal value of β (the angle internuclear vector makes with the spinning axis). Step I constitutes the preparation phase, step II, the evolution of chemical shift and step III refocusing the gamma-prepared state. The terms IxSx(z, γ) and IySy(z, γ) in the Hamiltonian commute, so there effect can be analyzed separately. For a right handed unit vector triple l, m, n, we note that
(17) |
This identity is used in analyzing the refocusing stage in Eq. (16).
If the preparation Hamiltonian is applied for an integral number of rotor periods, then
The final state following the refocusing is
The salient feature of the experiment is that both components of the chemical shift encoded gamma-prepared magnetization can be transferred following the evolution in the indirect dimension. The indirect dimension frequency is displaced by the rotor frequency.
When the recoupling is performed using the effective Hamiltonian , then we get
(18) |
If the preparation Hamiltonian is applied for an integral number of rotor periods, then
The final state following the refocusing is
Remark 1
The shift in the rotor frequency is different depending on if the preparation and refocusing is performed with , or . We use this feature to cross check Gamma-Prep peaks in the 2D spectra. Fig. 3C shows the build up of the Gamma-Prep PAMORE peak by using processing as shown in Fig. 2C.
3.1. Suppression of diagonals
If the experiment described in (16) or (18) is performed twice with two different values of γ1, e.g. and , then we will be able to retain the Gamma-Prep peaks by adding the signals from the two experiments when (this is obtained by inserting the half rotor period delay in experiment 2 between the preparation and refocusing step in (16)). The delay is implemented by an xx̄ pulse sequence using large rf-power to significantly eliminate chemical shift and other interactions, and any net rf-rotation due to uncaliberated power or rf-inhomogeneity. To keep the length of the experiment 1 and 2 the same, an identical delay is introduced in experiment 1 before the preparation phase, as depicted in Fig. 2D. The inphase magnetization arising from the gamma-prepared states have opposite signs after the refocusing block, where as the residual part of the magnetization has the same sign. By adding the two experiments and alternating the receiver phase, we only retain the signals giving rise to Gamma-Prep peaks in the spectrum and significantly suppress all other signals including the diagonal peaks.
4. Phase matching and heteronuclear recoupling
Consider two coupled heteronuclear spins I and S under magic angle spinning condition [21]. The spins are irradiated with rf fields at their Larmor frequencies along say the x direction. In a double-rotating Zeeman frame, rotating with both the spins at their Larmor frequency, the Hamiltonian of the system takes the form
(19) |
where ωI(t), ωS(t), and ωIS(t) represent time-varying chemical shifts for the two spins I and S and the coupling between them, respectively. These interactions can be expressed as a Fourier series , where ωr is the spinning frequency (in angular units), while the coefficients ωλ, (λ = I, S) reflect the dependence on the physical parameters like the isotropic chemical shift, anisotropic chemical shift, the dipole-dipole coupling constant and through this the internuclear distance [22,23].
Consider the rf irradiation on heteronuclear spin pair, where amplitude on spin I and S is chosen as and the offset Δωλ(t) = −Bλcos(Cλt). This offset is implemented as a phase modulation
(20) |
The rf-Hamiltonian for the irradiation takes the form
(21) |
which then gives
(22) |
where Cλ is in angular frequency units and we choose Cλ≫ ωλ(t), Bλ.
We choose CI = CS = C. In the interaction frame of the irradiation along x-axis, with the strength CI and CS on the two spins, the coupling Hamiltonian is averaged to
(23) |
and the rf-Hamiltonian of the spin system transforms to
(24) |
which averages over a period to
(25) |
which we rewrite as
(26) |
where and .
Now, if we choose B− = ωr and B+, removed from ωr and 2ωr (e.g., choose and ), then other resonances are avoided and one prepares a static coupling Hamiltonian in (23).
This then takes the form
(27) |
which will recouple the spins I and S. Note, this recoupling Hamiltonian is a zero quantum Hamiltonian.
Remark 2
If we choose BI = ωr and BS = −ωr, we also get B− = ωr and B+ = 0. This choice may be avoided as it will also couple the homonuclear spin pair I, if present.
Now observe, we can also prepare a double quantum Hamiltonian by choosing B+ = ωr and B−, removed from ωr and 2 ωr (e.g., choose and ). The resulting rf-phase modulation and transfer efficiency is as shown in Fig. 7 where the I − S spin pair is 15N–13Cα.
Then, one prepares a static coupling Hamiltonian in (23). This takes the form
(28) |
We call the above experiments MOM (MOdulation Matched) recoupling experiments.
We can make these experiments robust to rf-inhomogeneity, by simply phase alternating the phase ϕ(t) to π + ϕ(t), every units of time, i.e., (ϕ(t + τc) = ϕ(t)). We call this the POEM experiment (Phase alternated MOdulation Matched ExperiMent).
Now, consider the following set of 2D experiments, based on the recoupling block, where γ′ = γ + ωrt1.
(29) |
Simlarly, we have
(30) |
These experiments transfer both components of the magnetization to the other spin. In above, we have made repeated use of the identity (17) and the fact that operators IxSx(z, γ) and IySy(z, γ), in the Hamiltonian commute and hence the effect can be analyzed separately.
Finally, observe that if choose B+ = ωr and B− = −ωr (by choosing BI = 0), then we recouple both the zero and multiple quantum terms, resulting in an effective Hamiltonian 2IySy(z, γ). This Hamiltonian can then be used to implement the first step in (29) and (30), in half the time.
5. Experimental Results
All experiments [13] were performed on a 360 MHz spectrometer (1H Larmor frequency of 360 MHz) equipped with a triple resonance 4 mm probe. Uniformly 13C, 15N-labeled sample of glycine (purchased from Cambridge Isotope Laboratories, Andover, MA) was used in the full volume of standard 4 mm rotor at ambient temperature using sample spinning. The experiments used 3s recycling delay. All 2D experiments use 1024 sampling points in the direct dimension with 25 μs sampling dwell time and 128 points in the indirect dimension with 12.5 μs sampling dwell time. A 100 kHz CW decoupling is used during recoupling and TPPM during acquisition. For the Homonuclear experiments shown in Figs. 3 and 5, The Cα and CO resonances that are 12 kHz apart at 35 and 170 ppm respectively. The carrier is placed at CO resonance.
Fig. 3A shows the build up of the cross-peak as function of mixing time, in units of number of rotor periods for the 13Cα–13CO correlation experiment with PAMORE as the recoupling block as shown in Fig. 2A. The experiment uses an initial ramped CP for 1H to 13C cross polarization. The number of acquisitions for every t1 increment is 1. The PAMORE recoupling block is designed for a nominal power of 48 kHz. In experiment this power is optimized to give maximum transfer efficiency. Fig. 3B shows the dependence of the cross-peak height as function of rf-power for a mixing time of eight rotor periods when the rf power is varied over a range of 5 kHz. The experiment used CW decoupling on protons of during the transfer. Fig. 3C shows the build up of the Gamma-Prep peak as function of the mixing time, in units of number of rotor periods for the 13Cα–13CO Gamma-Prep correlation experiment with PAMORE as the recoupling block as in Fig. 2C, showing echo/anti-echo processing. Fig. 5A shows a typical spectra where the Gamma-Prep peaks are shifted by −ωr (the rotor frequency) after it is processed as shown in Fig. 2C. The build up shown in Fig. 3C is for the 13Cα–13CO–13Cα cross-peak (marked A). The PAMORE recoupling block used in the Gamma-Prep experiment is identical to the experiment as shown in Fig. 2A. Fig. 3D compares the peak heights of 13Cα → 13CO transfer and 13Cα–13CO–13Cα Gamma-Prep peak for a mixing time of 9 and 7 rotor period respectively. The 13Cα–13CO–13Cα Gamma-Prep peak is extracted from a 2D spectra as shown in Fig. 5A.
Fig. 2C shows how two Gamma-Prep experiments are processed. The Gamma-Prep signal from the two experiments has the form s1(t1, t2) = exp(−jωSt1)exp(−jωIt2) and s2(t1, t2) = exp(jωSt1)exp(−jωIt2).
The processing gives
(31) |
(32) |
which are used as inputs to States. If equal relaxation is assumed for antipase and inphase states, theoretically, the peak height should double as a result of Gamma-Prep experiment compared to a 2D PAMORE. Fig. 3D shows the obtained enhancement when mixing time for PAMORE and Gamma-Prep PAMORE are optimized.
Fig. 2D combines two Gamma-Prep acquisitions with half rotor period delays inserted suitably. The delay is implemented by an xx̄ pulse sequence using large rf-power to significantly eliminate chemical shift and other interactions and any net rf-rotation due to uncalibrated power or rf-inhomogeneity. The powers are chosen large enough to prevent chemical shift evolution and avoid Hartmann-Hahn and rotary resonance conditions and thereby prevent dipolar recoupling. The exact values are experimentally optimized. The calibrated 13C power during half rotor delay is 32.9 (kHz). The receiver phase is inverted to subtract the two acquisitions. The same experiment is repeated (with two acquisitions) with the phase of the last x pulse inverted as shown in Fig. 2D. The resulting spectra obtained from the two experiments are processed as shown in Fig. 2C.
Fig. 8 shows the build up of magnetization on 13Cα, extracted from a 2D experiment as shown in Fig. 6, using a POEM recoupling block. Four scans are collected per t1 increment. The experiment consists of an initial ramped CP transfer from 1H to 15N, with proton power calibrated on 50 kHz and 15N ramped from 42 to 46 kHz. The POEM power on 15N and 13C channels is calibrated to 24 kHz. The 15N carrier is at 4.5 kHz (125 ppm) and 13C carrier at 10 kHz (110 ppm). The 15N resonance is at 25 ppm. The phase modulation over a rotor period is as shown in Fig. 7B. The bottom panel of Fig. 8 shows the build up of magnetization as a function of the number of rotor periods. The top panel of Fig. 8 shows the transfer efficiency as function of variation in the rf power on the 13C channel [13].
6. Discussion and conclusion
The build up of the Gamma-Prep peak as a function of the mixing time t (of individual recoupling PAMORE blocks), is of the form , where κh is the strength of the dipolar coupled Hamiltonian as in Eq. (11). The cross-peak build up in a regular PAMORE or any γ-encoded recoupling block also has the same form and when averaged over β, the maximum efficiency is .73. Therefore we expect the Gamma-Prep peak to be twice the strength as compared to a normal cross-peak due to transfer of both components. The observed gains in Fig. 3D are less than expected and can be attributed to imperfections in the recoupling block from factors including rf-inhomogeneity, finite duration rf pulses, rotor syncronization of rf pulses, and limitations on how finely, we can discretize the rf-modulation and implement it as discrete phases. On our spectrometer, we were limited to constant phases over 1.3 μs duration for homonuclear experiments and 2.6 μs for the heteronuclear experiments.
In the Gamma-Prep spectra shown in Fig. 5A, the sign of displacement of chemical shift in the indirect dimension by the rotor frequency is different depending on if the preparation and refocusing is performed with , or . We can switch between the two Hamiltonians by simply inverting the sign of the bracketing pulses around the PAMORE building block. By adding the spectra from two such experiments and inverting the receiver phase, we can also suppress diagonal peaks in the Gamma-Prep experiment. We obtain the two copies of the Gamma-Prep peak as shown in the figure separated by 2ωr as shown in Fig. 5C. We use this feature to cross-check Gamma-Prep peaks in the 2d spectra. Methods proposed here for suppression of diagonals can help to resolve cross-peaks near the diagonals.
Note given the Hamiltonian , we can prepare , by simply using the identity
Now again performing the experiment described in (16) or (17) twice and inverting both the sign of the refocusing Hamiltonian and the receiver phase we can suppress the diagonal peaks. In future work we plan to investigate the merits of different diagonal suppression schemes in the presence of J couplings.
The heteronuclear POEM experiment can be used as a building block to perform gamma-prepared heteronuclear experiments as shown in Fig. 2B where the PAMORE block is replaced by POEM and one of the channels is 15N.
The modulating recoupling block described in this paper recouples the first Fourier component of time varying dipolar coupling constant. By simply increasing the phase ϕ(t) in the various recoupling blocks to twice its value, we can obtain an effective recoupling field with twice its value and hence collect the second Fourier component. The methods proposed here are expected to be useful for creating multidimensional solid state NMR experiments for improved resolution and sensitivity.
In this paper, we introduced a set of recoupling experiments, which belong to the class of phase modulated recoupling experiment [15–17,24,13]. In particular, we showed how these recoupling blocks can be used to develop two-dimensional NMR experiments which transfer both components of the magnetization [6]. Finally we showed how introducing half rotor period delays between the two recoupling periods, we can substantially suppress all diagonal peaks, leading to significantly resolved 2D spectra.
Acknowledgments
The research was supported in part by ONR 38A-1077404, AFOSR FA9550-05-1-0443 and NSF 0724057 and in part by the grants from the National Institutes of Biomedical Imaging and Bioengineering (EB003151 and EB002026).
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