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. 2014 Jul 22;10(7):401–405. doi: 10.6026/97320630010401

Figure 2.

Figure 2

A) Amino acid sequence alignment of the target, amino acid ABC transporter (binding protein) of C. perfringens SM101 (Accession No. YP_698644) and the template i.e. polar amino acid ABC uptake transporter substrate binding protein of Streptococcus thermophilus LMG 18311 (Accession No. YP_139361). Amino acid sequence of the the template (3HV1) shows 41% sequence identity, “*” - single, fully conserved residue; “:” - conservation of strong groups; “.” - conservation of weak groups; - no consensus; B) Homology modelled structure of the amino acid ABC transporter (binding protein) of C. perfringens SM101 (Accession No. YP_698644) derived from SWISS-MODEL server; C) The putative glutamate binding site (a stretch from amino acids 118 to 124) on the modelled structure are shown. Only three amino acids are shown in red.