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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2014 Jul 31;70(Pt 8):115–117. doi: 10.1107/S1600536814017012

Crystal structure of bis­[1-(naphthalen-1-ylmeth­yl)pyridinium] bis­(2,2-di­cyano­ethene-1,1-di­thiol­ato-κ2 S,S′)nickelate(II)

Miao Zhang a, Xu-Jie Xiong b,*
PMCID: PMC4158505  PMID: 25249870

In the ion-pair complex, bis­[1-(naphthalen-1-ylmeth­yl)pyridinium] bis­(2,2-di­cyano­ethene-1,1-di­thiol­ate-κ2 S,S′)nickelate(II), C—H⋯N and C—H⋯Ni hydrogen bonds as well as π–π inter­actions between the ions result in the formation of a three-dimensional network.

Keywords: bis­(2,2-bi­cyano­ethene-1,1-di­thiol­ato)nickel(II); pyridinium; hydrogen bonding; π–π inter­action; crystal structure.

Abstract

A new ion-pair complex, (C16H14N)2[Ni(C4N2S2)2] or (1-NaMePy)2[Ni(imnt)2], where 1-NaMePy is 1-(4-naphthyl­methyl­ene)pyridinium and imnt is 2,2-di­cyano­ethene-1,1-di­thiol­ate, was obtained by the direct reaction of NiCl2, K2imnt and (1-NaMePy)+Br in H2O. The asymmetric unit contains a [1-NaMePy]+ cation and one half of an Ni(imnt)2 2− anion. The NiII ion lies on an inversion centre and adopts a square-planar configuration with Ni—S bond lengths of 2.200 (1) and 2.216 (1) Å. In the [1-NaMePy]+ cation, the naphthyl ringsystem and the pyridinium ring make a dihedral angle of 90.0 (2)°. In the crystal, C—H⋯N and C—H⋯Ni hydrogen bonds, as well as π–π inter­actions between the chelate ring and the pyridinium ring [centroid–centroid distance = 3.675 (2) Å] link the ions into a three-dimensional network.

Chemical context  

Transition metal complexes with di­thiol­ate ligands such as 2,2-di­cyano­ethene-1,1-di­thiol­ate (imnt) or 1,2-di­cyano­ethene-1,2-di­thiol­ate (mnt) are important mol­ecular materials with inter­esting electrical conductivity, superconductivity, optical and magnetic properties (Liu et al., 1996; Robertson & Cronin, 2002; Ni et al., 2005; Ren et al., 2002; Xie et al., 2002; Duan et al. 2010). Recently, attempts have been made to extend the range of metal complexes containing the Ni(imnt)2 2− anion, and the topology and the size of some organic cations, such as substituted benzyl pyridinium derivatives, play an important role in tuning the stacks of anions and cations of mol­ecular materials containing the Ni(imnt)2 2− anion (Liu et al., 2006; Feng et al., 2007). The title ion-pair complex, (1-NaMePy)2[Ni(imnt)2] has therefore been prepared and investigated. graphic file with name e-70-00115-scheme1.jpg

Structural commentary  

The asymmetric unit of the title compound consists of one [1-NaMePy]+ cation and one-half of an Ni(imnt)2 2− anion located about an inversion center. The NiS4 core exhibits a square-planar configuration, with Ni—S bond lengths of 2.200 (1) and 2.216 (1) Å. The S1—Ni1—S2 bond angle within the four-membered ring (Ni1/S1/C1/S2) is 78.91 (3)°. The N1 and N2 atoms of the C N groups deviate from the Ni1/S1/C1/S2 plane by 0.078 (3) and 0.169 (3) Å, respectively. The [1-NaMePy]+ cation adopts a conformation in which both the naphthyl ring system and the pyridinium ring are twisted with respect to the N3/C11/C10 reference plane, making dihedral angles of 10.5 (2)° and 87.3 (3)°, respectively. The naphthyl ring system and the pyridinium ring make a dihedral angle of 90.0 (2)°.

Supra­molecular features  

There are three weak inter­actions between the Ni(imnt)2 2− anion and [1-NaMePy]+ cation. The first is a π–π contact between the chelate ring (which is defined by atoms Ni1, S1, S2, and C1) of the anion and the pyridinium ring of the cation (Fig. 2) with a distance of 3.675 (2) Å between the centroids. The second is a C—H⋯Ni hydrogen bond and the third is a C—H⋯N hydrogen bond (Table 1, Fig. 3). The combination of these weak inter­actions consolidates the title complex into a three-dimensional network structure (Fig. 3).

Figure 2.

Figure 2

The π–π contact between the chelate ring of the anion and the pyridinium ring of the cation (shown as a dashed line).

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C19—H19⋯N2i 0.93 2.60 3.265 (5) 129
C20—H20⋯N1ii 0.93 2.42 3.304 (5) 160
C15—H15B⋯Ni1iii 0.97 3.07 3.508 (4) 109

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Figure 3.

Figure 3

The packing of the title compound, viewed down the a axis, showing the network of mol­ecules connected by C—H⋯N hydrogen bonds (dashed lines).

Database survey  

Many ion-pair complexes containing Ni(imnt)2 2− anion have been reported, typical examples being [TBA]2[Ni(imnt)2] and [4NO2BzPy]2[Ni(imnt)2] [TBA is tetra­butyl­ammonium; 4NO2BzPy is 1-(4-nitro­benz­yl)pyridinium] (Liu et al., 2006), [4FBzPy]2[Ni(imnt)2] [4FBzPy is 1-(4-fluoro­benz­yl)pyrid­in­ium] (Zhou & Ni, 2007), [Bz2NH2Py]2[Ni(imnt)2] (Bz2NH2Py is 1-benzyl-2-amino­pyridinium) (Hou et al., 2007), [BzDMAP]2[Ni(imnt)2] [BzDMAP is 1-benzyl-4-(di­methyl­amino)­pyridinium] (Feng et al., 2007), [2-NaMePy]2[Ni(imnt)2] and [2-NaMe-4-MePy]2[Ni(imnt)2] [2-NaMePy is 1-(2-naphthyl­meth­yl)pyridinium; 2-NaMe-4-MePy is 1-(2-naphthyl­meth­yl)-4-methyl­pyridinium] (Huang et al., 2009), [Bz-4-MePy]2[Ni(imnt)2] and [Bz-4-MeQl]2[Ni(imnt)2] (Bz-4-MePy is 1-benzyl-4-methyl­pyridinium; Bz-4-MeQl is 1-benzyl-4-methyl­quinolinium) (Liu et al., 2013). For a description of C—H⋯N and C—H⋯Ni hydrogen bonds, see: Huang et al., (2009). For a description of π–π contacts between chelate and phenyl rings, see: Molčanov et al. (2013).

Synthesis and crystallization  

The title ion-pair complex was prepared by the direct reaction of 1:2:2 mol equiv. of NiCl2·6H2O, K2imnt and 1-(4-naphthyl­methyl­ene)pyridinium bromide in water (Huang et al., 2009). The brown product obtained was purified through recrystallization from a mixed solvent of methanol and water (yield: 78%). Brown block-shaped single crystals suitable for X-ray analysis were obtained by slow evaporation of a methanol solution at room temperature after about 4 weeks.

Refinement  

All H-atoms were positioned geometrically and refined using a riding model with d(C—H) = 0.93 Å, U iso(H) = 1.2U eq(C) for aromatic and d(C—H) = 0.97 Å, U iso(H) = 1.2U eq(C) for CH2 atoms. Crystal data, data collection and structure refinement details are summarized in Table 2.

Table 2. Experimental details.

Crystal data
Chemical formula (C16H14N)2[Ni(C4N2S2)2]
M r 779.63
Crystal system, space group Monoclinic, P21/c
Temperature (K) 291
a, b, c (Å) 11.876 (3), 9.025 (3), 17.465 (5)
β (°) 91.808 (4)
V3) 1871.0 (9)
Z 2
Radiation type Mo Kα
μ (mm−1) 0.78
Crystal size (mm) 0.36 × 0.30 × 0.21
 
Data collection
Diffractometer Bruker SMART CCD area detector
Absorption correction Multi-scan (SADABS; Bruker, 2000)
T min, T max 0.762, 0.843
No. of measured, independent and observed [I > 2σ(I)] reflections 9345, 3283, 2228
R int 0.031
(sin θ/λ)max−1) 0.595
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.040, 0.102, 1.04
No. of reflections 3283
No. of parameters 232
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.21, −0.15

Computer programs: SMART and SAINT (Bruker, 2000) and SHELXTL (Sheldrick, 2008).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814017012/kp2472sup1.cif

e-70-00115-sup1.cif (17.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814017012/kp2472Isup2.hkl

e-70-00115-Isup2.hkl (161.1KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814017012/kp2472Isup3.cml

CCDC reference: 1015644

Additional supporting information: crystallographic information; 3D view; checkCIF report

Figure 1.

Figure 1

The mol­ecular structure of (I), with the atom labelling and 30% probability displacement ellipsoids for non-H atoms The other half of the anion is generated by the inversion-symmetry operation −x, y + Inline graphic, −z + Inline graphic.

Acknowledgments

The authors thank the Doctor’s Foundation of Huanggong Normal University (10CD001) and the Educational Commission of Hubei Province of China (Q20112902) for financial support.

supplementary crystallographic information

Crystal data

(C16H14N)2[Ni(C4N2S2)2] F(000) = 804
Mr = 779.63 Dx = 1.384 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 1994 reflections
a = 11.876 (3) Å θ = 2.5–22.7°
b = 9.025 (3) Å µ = 0.78 mm1
c = 17.465 (5) Å T = 291 K
β = 91.808 (4)° Block, brown
V = 1871.0 (9) Å3 0.36 × 0.30 × 0.21 mm
Z = 2

Data collection

Bruker SMART CCD area detector diffractometer 3283 independent reflections
Radiation source: fine-focus sealed tube 2228 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.031
φ and ω scans θmax = 25.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2000) h = −13→14
Tmin = 0.762, Tmax = 0.843 k = −9→10
9345 measured reflections l = −20→20

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102 H-atom parameters constrained
S = 1.04 w = 1/[σ2(Fo2) + (0.046P)2 + 0.1262P] where P = (Fo2 + 2Fc2)/3
3283 reflections (Δ/σ)max < 0.001
232 parameters Δρmax = 0.21 e Å3
0 restraints Δρmin = −0.15 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Ni1 0.0000 0.0000 0.0000 0.06043 (19)
S1 0.03025 (7) 0.02841 (8) 0.12405 (4) 0.0697 (2)
S2 0.08762 (7) 0.21679 (9) 0.00355 (4) 0.0709 (2)
N1 0.2232 (3) 0.5408 (4) 0.11604 (17) 0.1156 (12)
N2 0.1247 (3) 0.2483 (3) 0.29836 (16) 0.0963 (9)
N3 0.2381 (2) 0.7148 (3) 0.42980 (16) 0.0805 (7)
C1 0.0909 (2) 0.1950 (3) 0.10140 (14) 0.0616 (7)
C2 0.1329 (2) 0.2957 (3) 0.15460 (14) 0.0628 (7)
C3 0.1819 (3) 0.4313 (4) 0.13254 (16) 0.0792 (9)
C4 0.1274 (3) 0.2685 (3) 0.23417 (17) 0.0704 (8)
C5 0.4644 (3) 0.7646 (4) 0.4864 (2) 0.1009 (11)
H5 0.4408 0.7981 0.4382 0.121*
C6 0.5731 (3) 0.8033 (5) 0.5164 (3) 0.1080 (13)
H6 0.6212 0.8604 0.4875 0.130*
C7 0.6062 (3) 0.7565 (4) 0.5872 (2) 0.1045 (12)
H7 0.6768 0.7843 0.6069 0.125*
C8 0.5373 (3) 0.6678 (4) 0.6314 (2) 0.0817 (9)
C9 0.5710 (3) 0.6177 (4) 0.7054 (2) 0.0983 (11)
H9 0.6410 0.6467 0.7255 0.118*
C10 0.5068 (4) 0.5308 (5) 0.7473 (3) 0.1114 (13)
H10 0.5314 0.4992 0.7956 0.134*
C11 0.4017 (4) 0.4881 (5) 0.7169 (3) 0.1169 (14)
H11 0.3563 0.4266 0.7455 0.140*
C12 0.3642 (3) 0.5342 (4) 0.6470 (2) 0.0957 (11)
H12 0.2933 0.5047 0.6286 0.115*
C13 0.4307 (3) 0.6261 (3) 0.6015 (2) 0.0769 (9)
C14 0.3947 (3) 0.6786 (4) 0.5280 (2) 0.0812 (9)
C15 0.2770 (3) 0.6348 (4) 0.4999 (2) 0.1096 (13)
H15A 0.2759 0.5292 0.4895 0.131*
H15B 0.2246 0.6539 0.5402 0.131*
C16 0.2514 (4) 0.6590 (5) 0.3620 (3) 0.1198 (14)
H16 0.2866 0.5676 0.3573 0.144*
C17 0.2150 (5) 0.7315 (7) 0.2989 (3) 0.1362 (19)
H17 0.2264 0.6917 0.2506 0.163*
C18 0.1615 (4) 0.8632 (6) 0.3060 (3) 0.1177 (15)
H18 0.1346 0.9136 0.2627 0.141*
C19 0.1477 (3) 0.9203 (4) 0.3761 (3) 0.1004 (11)
H19 0.1118 1.0109 0.3821 0.120*
C20 0.1868 (3) 0.8436 (4) 0.43750 (19) 0.0822 (9)
H20 0.1775 0.8821 0.4863 0.099*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Ni1 0.0607 (3) 0.0696 (4) 0.0503 (3) 0.0003 (3) −0.0087 (2) −0.0033 (2)
S1 0.0793 (5) 0.0764 (5) 0.0527 (4) −0.0091 (4) −0.0100 (4) 0.0017 (4)
S2 0.0824 (5) 0.0771 (5) 0.0528 (4) −0.0074 (4) −0.0057 (4) −0.0001 (4)
N1 0.173 (3) 0.094 (2) 0.080 (2) −0.040 (2) −0.010 (2) 0.0011 (17)
N2 0.130 (3) 0.097 (2) 0.0603 (16) 0.0021 (18) −0.0146 (16) −0.0046 (15)
N3 0.0765 (18) 0.083 (2) 0.0818 (19) −0.0104 (15) −0.0064 (15) 0.0020 (16)
C1 0.0571 (16) 0.0696 (18) 0.0577 (15) 0.0041 (14) −0.0062 (13) −0.0005 (14)
C2 0.0666 (18) 0.0695 (19) 0.0517 (16) −0.0009 (15) −0.0079 (13) −0.0009 (14)
C3 0.100 (3) 0.081 (2) 0.0552 (18) −0.008 (2) −0.0128 (17) −0.0031 (17)
C4 0.076 (2) 0.072 (2) 0.0625 (19) 0.0008 (16) −0.0157 (15) −0.0052 (16)
C5 0.079 (2) 0.106 (3) 0.118 (3) −0.009 (2) −0.004 (2) 0.026 (2)
C6 0.068 (2) 0.118 (3) 0.139 (4) −0.026 (2) 0.012 (2) 0.022 (3)
C7 0.079 (3) 0.111 (3) 0.122 (3) −0.014 (2) −0.011 (2) 0.005 (3)
C8 0.065 (2) 0.071 (2) 0.109 (3) −0.0020 (17) 0.005 (2) −0.004 (2)
C9 0.084 (3) 0.102 (3) 0.108 (3) 0.007 (2) −0.015 (2) 0.006 (2)
C10 0.103 (3) 0.127 (3) 0.104 (3) 0.017 (3) −0.005 (3) 0.019 (3)
C11 0.097 (3) 0.120 (3) 0.133 (4) 0.010 (3) 0.003 (3) 0.047 (3)
C12 0.070 (2) 0.100 (3) 0.117 (3) 0.000 (2) −0.002 (2) 0.028 (2)
C13 0.064 (2) 0.0643 (19) 0.103 (2) 0.0054 (16) 0.0043 (19) 0.0066 (18)
C14 0.063 (2) 0.077 (2) 0.103 (2) −0.0091 (17) −0.0005 (18) 0.0121 (19)
C15 0.086 (3) 0.119 (3) 0.122 (3) −0.025 (2) −0.024 (2) 0.046 (3)
C16 0.143 (4) 0.103 (3) 0.114 (3) 0.002 (3) 0.019 (3) −0.020 (3)
C17 0.184 (5) 0.153 (5) 0.073 (3) −0.048 (4) 0.010 (3) −0.032 (3)
C18 0.117 (4) 0.140 (4) 0.094 (3) −0.035 (3) −0.030 (3) 0.034 (3)
C19 0.095 (3) 0.095 (3) 0.111 (3) −0.003 (2) −0.007 (2) 0.012 (3)
C20 0.088 (2) 0.086 (2) 0.072 (2) −0.013 (2) −0.0014 (18) −0.0120 (19)

Geometric parameters (Å, º)

Ni1—S1i 2.2000 (9) C8—C9 1.415 (5)
Ni1—S1 2.2000 (9) C9—C10 1.329 (5)
Ni1—S2i 2.2160 (9) C9—H9 0.9300
Ni1—S2 2.2160 (9) C10—C11 1.395 (6)
S1—C1 1.718 (3) C10—H10 0.9300
S2—C1 1.719 (3) C11—C12 1.353 (5)
N1—C3 1.144 (4) C11—H11 0.9300
N2—C4 1.137 (3) C12—C13 1.409 (4)
N3—C16 1.300 (5) C12—H12 0.9300
N3—C20 1.321 (4) C13—C14 1.420 (4)
N3—C15 1.482 (4) C14—C15 1.519 (4)
C1—C2 1.382 (4) C15—H15A 0.9700
C2—C3 1.414 (4) C15—H15B 0.9700
C2—C4 1.415 (4) C16—C17 1.342 (6)
C5—C14 1.361 (4) C16—H16 0.9300
C5—C6 1.421 (5) C17—C18 1.355 (6)
C5—H5 0.9300 C17—H17 0.9300
C6—C7 1.353 (5) C18—C19 1.344 (5)
C6—H6 0.9300 C18—H18 0.9300
C7—C8 1.395 (5) C19—C20 1.346 (5)
C7—H7 0.9300 C19—H19 0.9300
C8—C13 1.406 (4) C20—H20 0.9300
S1i—Ni1—S1 180.00 (4) C9—C10—H10 120.8
S1i—Ni1—S2i 78.91 (3) C11—C10—H10 120.8
S1—Ni1—S2i 101.09 (3) C12—C11—C10 121.6 (4)
S1i—Ni1—S2 101.09 (3) C12—C11—H11 119.2
S1—Ni1—S2 78.91 (3) C10—C11—H11 119.2
S2i—Ni1—S2 180.00 (4) C11—C12—C13 121.1 (4)
C1—S1—Ni1 86.09 (9) C11—C12—H12 119.5
C1—S2—Ni1 85.56 (10) C13—C12—H12 119.5
C16—N3—C20 120.2 (3) C8—C13—C12 117.5 (3)
C16—N3—C15 121.3 (4) C8—C13—C14 119.2 (3)
C20—N3—C15 118.5 (3) C12—C13—C14 123.2 (3)
C2—C1—S1 124.5 (2) C5—C14—C13 120.1 (3)
C2—C1—S2 126.1 (2) C5—C14—C15 122.9 (3)
S1—C1—S2 109.42 (15) C13—C14—C15 117.0 (3)
C1—C2—C3 121.9 (2) N3—C15—C14 113.6 (3)
C1—C2—C4 121.3 (3) N3—C15—H15A 108.8
C3—C2—C4 116.8 (3) C14—C15—H15A 108.8
N1—C3—C2 178.5 (4) N3—C15—H15B 108.8
N2—C4—C2 178.7 (4) C14—C15—H15B 108.8
C14—C5—C6 120.3 (4) H15A—C15—H15B 107.7
C14—C5—H5 119.9 N3—C16—C17 120.9 (4)
C6—C5—H5 119.9 N3—C16—H16 119.5
C7—C6—C5 119.6 (3) C17—C16—H16 119.5
C7—C6—H6 120.2 C16—C17—C18 119.4 (4)
C5—C6—H6 120.2 C16—C17—H17 120.3
C6—C7—C8 121.7 (4) C18—C17—H17 120.3
C6—C7—H7 119.1 C19—C18—C17 119.4 (4)
C8—C7—H7 119.1 C19—C18—H18 120.3
C7—C8—C13 119.0 (3) C17—C18—H18 120.3
C7—C8—C9 122.3 (3) C18—C19—C20 118.7 (4)
C13—C8—C9 118.6 (3) C18—C19—H19 120.7
C10—C9—C8 122.7 (4) C20—C19—H19 120.7
C10—C9—H9 118.6 N3—C20—C19 121.3 (3)
C8—C9—H9 118.6 N3—C20—H20 119.3
C9—C10—C11 118.4 (4) C19—C20—H20 119.3

Symmetry code: (i) −x, −y, −z.

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C19—H19···N2ii 0.93 2.60 3.265 (5) 129
C20—H20···N1iii 0.93 2.42 3.304 (5) 160
C15—H15B···Ni1iv 0.97 3.07 3.508 (4) 109

Symmetry codes: (ii) x, y+1, z; (iii) x, −y+3/2, z+1/2; (iv) −x, y+1/2, −z+1/2.

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814017012/kp2472sup1.cif

e-70-00115-sup1.cif (17.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814017012/kp2472Isup2.hkl

e-70-00115-Isup2.hkl (161.1KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814017012/kp2472Isup3.cml

CCDC reference: 1015644

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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