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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2014 Aug 20;70(Pt 9):o1029–o1030. doi: 10.1107/S1600536814018492

Crystal structure of N-(1-allyl-3-chloro-4-eth­oxy-1H-indazol-5-yl)-4-meth­oxybenzene­sulfonamide

Hakima Chicha a, El Mostapha Rakib a, Latifa Bouissane a,*, Mohamed Saadi b, Lahcen El Ammari b
PMCID: PMC4186176  PMID: 25309208

Abstract

In the title compound, C19H20ClN3O4S, the benzene ring is inclined to the indazole ring system (r.m.s. deviation = 0.014 Å) by 65.07 (8)°. The allyl and eth­oxy groups are almost normal to the indazole ring, as indicated by the respective torsion angles [N—N—C—C = 111.6 (2) and C—C—O—C = −88.1 (2)°]. In the crystal, mol­ecules are connected by N—H⋯N hydrogen bonds, forming helical chains propagating along [010]. The chains are linked by C—H⋯O hydrogen bonds, forming a three-dimensional network.

Keywords: crystal structure, indazole, benzene­sulfonamide, hydrogen bonds

Related literature  

For the biological activity of sulfonamides, see: El-Sayed et al. (2011); Mustafa et al. (2012); Bouissane et al. (2006); Ghorab et al. (2009). For similar compounds, see: Abbassi et al. (2012, 2013); Chicha et al. (2014).graphic file with name e-70-o1029-scheme1.jpg

Experimental  

Crystal data  

  • C19H20ClN3O4S

  • M r = 421.89

  • Monoclinic, Inline graphic

  • a = 8.2699 (7) Å

  • b = 13.1235 (12) Å

  • c = 10.0026 (9) Å

  • β = 110.379 (5)°

  • V = 1017.64 (16) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.32 mm−1

  • T = 296 K

  • 0.42 × 0.32 × 0.28 mm

Data collection  

  • Bruker X8 APEX Diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2008) T min = 0.670, T max = 0.746

  • 12792 measured reflections

  • 5605 independent reflections

  • 4754 reflections with I > 2σ(I)

  • R int = 0.028

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.035

  • wR(F 2) = 0.088

  • S = 1.03

  • 5605 reflections

  • 253 parameters

  • 1 restraint

  • H-atom parameters constrained

  • Δρmax = 0.18 e Å−3

  • Δρmin = −0.20 e Å−3

  • Absolute structure: Flack & Bernardinelli (2000)

  • Absolute structure parameter: −0.04 (4)

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: PLATON (Spek, 2009) and publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814018492/su2771sup1.cif

e-70-o1029-sup1.cif (25.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814018492/su2771Isup2.hkl

e-70-o1029-Isup2.hkl (274.4KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814018492/su2771Isup3.cml

. DOI: 10.1107/S1600536814018492/su2771fig1.tif

A view of the mol­ecular structure of the title mol­ecule, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level.

. DOI: 10.1107/S1600536814018492/su2771fig2.tif

A partial view of the crystal packing of the title compound. The hydrogen bonds are shown as dashed lines (see Table 1 for details).

CCDC reference: 1019238

Additional supporting information: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H1N⋯N2i 0.84 2.11 2.931 (2) 166
C19—H19A⋯O3ii 0.96 2.37 3.285 (2) 159
C3—H3B⋯O2iii 0.97 2.47 3.418 (3) 165

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors thank the Unit of Support for Technical and Scientific Research (UATRS, CNRST) for the X-ray measurements and the University Sultan Moulay Slimane, Beni-Mellal, Morocco, for financial support.

supplementary crystallographic information

S1. Experimental

A mixture of 1-allyl-3-chloro-5-nitroindazole (1.22 mmol) and anhydrous SnCl2 (1.1 g, 6.1 mmol) in 25 ml of absolute ethanol was heated at 333 K for 6 h. After reduction, the starting material disappeared, and the solution was allowed to cool. The pH was made slightly basic (pH 7–8) by addition of 5% aqueous potassium bicarbonate before extraction with ethyl acetate. The organic phase was washed with brine and dried over magnesium sulfate. The solvent was removed to afford the amine, which was immediately dissolved in pyridine (5 ml) and then reacted with 4-methoxybenzenesulfonyl chloride (1.25 mmol) at room temperature for 24 h. After the reaction mixture was concentrated in vacuo, the resulting residue was purified by flash chromatography (eluted with ethyl acetate:hexane 2:8). Crystals of the title compound were obtained by recrystallization from ethanol (yield = 43%; m.p. = 397 K).

S2. Refinement

Reflections (001) and (100), affected by the beam stop, were removed from the refinement. The H atoms were located in a difference map and treated as riding atoms: N–H = 0.84 Å, C–H = 0.93 - 0.97 Å, with Uiso(H) = 1.5Ueq(C-methyl) and = 1.2Ueq(N,C) for other H atoms.

Figures

Fig. 1.

Fig. 1.

A view of the molecular structure of the title molecule, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

A partial view of the crystal packing of the title compound. The hydrogen bonds are shown as dashed lines (see Table 1 for details).

Crystal data

C19H20ClN3O4S F(000) = 440
Mr = 421.89 Dx = 1.377 Mg m3
Monoclinic, P21 Melting point: 397 K
Hall symbol: P 2yb Mo Kα radiation, λ = 0.71073 Å
a = 8.2699 (7) Å Cell parameters from 5605 reflections
b = 13.1235 (12) Å θ = 2.6–29.6°
c = 10.0026 (9) Å µ = 0.32 mm1
β = 110.379 (5)° T = 296 K
V = 1017.64 (16) Å3 Prism, colourless
Z = 2 0.42 × 0.32 × 0.28 mm

Data collection

Bruker X8 APEX Diffractometer 5605 independent reflections
Radiation source: fine-focus sealed tube 4754 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.028
φ and ω scans θmax = 29.6°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008) h = −11→11
Tmin = 0.670, Tmax = 0.746 k = −18→18
12792 measured reflections l = −12→13

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035 H-atom parameters constrained
wR(F2) = 0.088 w = 1/[σ2(Fo2) + (0.0435P)2 + 0.0481P] where P = (Fo2 + 2Fc2)/3
S = 1.03 (Δ/σ)max = 0.001
5605 reflections Δρmax = 0.18 e Å3
253 parameters Δρmin = −0.20 e Å3
1 restraint Absolute structure: Flack & Bernardinelli (2000)
Primary atom site location: structure-invariant direct methods Absolute structure parameter: −0.04 (4)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.5375 (4) 0.8680 (4) 0.9417 (3) 0.1124 (13)
H1A 0.6182 0.8159 0.9577 0.135*
H1B 0.5344 0.9084 1.0173 0.135*
C2 0.4301 (3) 0.8844 (2) 0.8151 (3) 0.0706 (7)
H2 0.3506 0.9370 0.8018 0.085*
C3 0.4268 (2) 0.82350 (16) 0.6893 (2) 0.0519 (4)
H3A 0.4629 0.8663 0.6257 0.062*
H3B 0.5089 0.7680 0.7206 0.062*
C4 0.0173 (2) 0.76621 (13) 0.43723 (18) 0.0438 (4)
C5 0.0066 (2) 0.69652 (13) 0.54239 (16) 0.0396 (3)
C6 0.1670 (2) 0.70913 (13) 0.65413 (18) 0.0411 (4)
C7 0.2124 (2) 0.65003 (15) 0.77993 (19) 0.0472 (4)
H7 0.3187 0.6575 0.8526 0.057*
C8 0.0936 (2) 0.58180 (14) 0.78968 (19) 0.0455 (4)
H8 0.1200 0.5420 0.8714 0.055*
C9 −0.0697 (2) 0.56870 (13) 0.68005 (17) 0.0387 (3)
C10 −0.1141 (2) 0.62525 (13) 0.55548 (17) 0.0389 (3)
C11 −0.4058 (3) 0.67175 (17) 0.4348 (2) 0.0595 (5)
H11A −0.3680 0.7422 0.4467 0.071*
H11B −0.4498 0.6548 0.5102 0.071*
C12 −0.5450 (3) 0.6575 (2) 0.2914 (3) 0.0826 (8)
H12A −0.6410 0.7009 0.2846 0.124*
H12B −0.5821 0.5877 0.2807 0.124*
H12C −0.5006 0.6748 0.2176 0.124*
C13 −0.1432 (2) 0.47263 (13) 0.97527 (17) 0.0372 (3)
C14 −0.0709 (2) 0.37584 (14) 1.00480 (19) 0.0445 (4)
H14 −0.0998 0.3261 0.9342 0.053*
C15 0.0440 (2) 0.35386 (14) 1.1395 (2) 0.0472 (4)
H15 0.0936 0.2895 1.1594 0.057*
C16 0.0854 (2) 0.42823 (14) 1.24556 (18) 0.0412 (4)
C17 0.0108 (3) 0.52403 (15) 1.21696 (19) 0.0509 (5)
H17 0.0365 0.5732 1.2882 0.061*
C18 −0.1031 (2) 0.54584 (15) 1.08055 (19) 0.0472 (4)
H18 −0.1525 0.6103 1.0603 0.057*
C19 0.2358 (3) 0.4703 (2) 1.4897 (2) 0.0654 (6)
H19A 0.3188 0.4414 1.5739 0.098*
H19B 0.1310 0.4845 1.5071 0.098*
H19C 0.2808 0.5323 1.4656 0.098*
N1 0.25612 (19) 0.78146 (13) 0.61078 (16) 0.0475 (3)
H1N −0.1966 0.4399 0.6454 0.057*
N2 0.1641 (2) 0.81619 (12) 0.47747 (17) 0.0487 (4)
N3 −0.18652 (19) 0.49314 (12) 0.69400 (14) 0.0450 (3)
O1 −0.26451 (16) 0.60654 (10) 0.44257 (13) 0.0492 (3)
O2 −0.3468 (2) 0.60356 (12) 0.80661 (15) 0.0631 (4)
O3 −0.41372 (18) 0.41918 (13) 0.76263 (15) 0.0663 (4)
O4 0.20127 (17) 0.39973 (12) 1.37445 (14) 0.0575 (4)
S1 −0.29029 (5) 0.50045 (3) 0.80328 (4) 0.04255 (11)
Cl1 −0.13391 (7) 0.78969 (4) 0.27168 (5) 0.06011 (14)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0692 (16) 0.197 (4) 0.0710 (18) −0.008 (2) 0.0241 (14) −0.035 (2)
C2 0.0470 (11) 0.0776 (16) 0.0869 (16) −0.0028 (11) 0.0230 (11) −0.0236 (13)
C3 0.0415 (9) 0.0562 (11) 0.0615 (11) −0.0034 (8) 0.0223 (8) 0.0045 (9)
C4 0.0545 (10) 0.0401 (10) 0.0375 (8) 0.0026 (8) 0.0168 (7) 0.0043 (7)
C5 0.0474 (9) 0.0380 (8) 0.0345 (7) 0.0047 (7) 0.0155 (6) 0.0034 (6)
C6 0.0436 (8) 0.0399 (9) 0.0415 (8) 0.0019 (7) 0.0169 (7) 0.0041 (7)
C7 0.0441 (9) 0.0529 (11) 0.0404 (8) 0.0016 (8) 0.0096 (7) 0.0075 (7)
C8 0.0517 (10) 0.0480 (10) 0.0367 (8) 0.0037 (8) 0.0154 (7) 0.0096 (7)
C9 0.0471 (9) 0.0340 (8) 0.0377 (8) −0.0011 (7) 0.0184 (7) −0.0012 (6)
C10 0.0460 (8) 0.0355 (8) 0.0343 (7) 0.0020 (7) 0.0129 (6) −0.0020 (6)
C11 0.0527 (10) 0.0579 (12) 0.0599 (11) 0.0003 (10) 0.0097 (9) −0.0046 (10)
C12 0.0651 (14) 0.0873 (19) 0.0745 (15) −0.0002 (13) −0.0023 (12) 0.0097 (14)
C13 0.0374 (7) 0.0407 (9) 0.0341 (7) 0.0006 (6) 0.0129 (6) 0.0056 (6)
C14 0.0526 (9) 0.0398 (9) 0.0398 (8) 0.0039 (8) 0.0145 (7) −0.0014 (7)
C15 0.0530 (10) 0.0396 (9) 0.0487 (9) 0.0108 (8) 0.0171 (8) 0.0061 (7)
C16 0.0353 (7) 0.0475 (10) 0.0390 (8) 0.0030 (7) 0.0108 (6) 0.0053 (7)
C17 0.0548 (10) 0.0466 (11) 0.0424 (9) 0.0043 (8) 0.0057 (7) −0.0067 (7)
C18 0.0532 (10) 0.0382 (9) 0.0447 (9) 0.0072 (7) 0.0100 (8) 0.0024 (7)
C19 0.0630 (12) 0.0784 (16) 0.0416 (10) −0.0014 (11) 0.0013 (8) 0.0019 (10)
N1 0.0483 (7) 0.0480 (8) 0.0464 (8) −0.0015 (7) 0.0169 (6) 0.0078 (7)
N2 0.0601 (9) 0.0433 (8) 0.0465 (8) 0.0024 (7) 0.0234 (7) 0.0091 (6)
N3 0.0608 (8) 0.0372 (7) 0.0419 (7) −0.0087 (7) 0.0241 (6) −0.0053 (6)
O1 0.0551 (7) 0.0475 (7) 0.0390 (6) −0.0016 (6) 0.0089 (5) −0.0066 (5)
O2 0.0731 (9) 0.0687 (10) 0.0497 (8) 0.0340 (8) 0.0242 (7) 0.0146 (7)
O3 0.0477 (7) 0.0917 (12) 0.0499 (8) −0.0213 (8) 0.0049 (6) 0.0132 (8)
O4 0.0520 (7) 0.0689 (9) 0.0419 (6) 0.0142 (7) 0.0041 (5) 0.0047 (6)
S1 0.03950 (19) 0.0505 (2) 0.03584 (18) 0.00353 (19) 0.01090 (14) 0.00789 (17)
Cl1 0.0752 (3) 0.0580 (3) 0.0390 (2) −0.0010 (2) 0.0097 (2) 0.0121 (2)

Geometric parameters (Å, º)

C1—C2 1.287 (4) C11—H11B 0.9700
C1—H1A 0.9300 C12—H12A 0.9600
C1—H1B 0.9300 C12—H12B 0.9600
C2—C3 1.483 (3) C12—H12C 0.9600
C2—H2 0.9300 C13—C18 1.378 (3)
C3—N1 1.463 (2) C13—C14 1.391 (2)
C3—H3A 0.9700 C13—S1 1.7650 (16)
C3—H3B 0.9700 C14—C15 1.382 (2)
C4—N2 1.313 (2) C14—H14 0.9300
C4—C5 1.420 (2) C15—C16 1.393 (3)
C4—Cl1 1.7201 (17) C15—H15 0.9300
C5—C10 1.407 (2) C16—O4 1.3636 (19)
C5—C6 1.416 (2) C16—C17 1.386 (3)
C6—N1 1.362 (2) C17—C18 1.391 (2)
C6—C7 1.413 (2) C17—H17 0.9300
C7—C8 1.358 (3) C18—H18 0.9300
C7—H7 0.9300 C19—O4 1.428 (3)
C8—C9 1.423 (2) C19—H19A 0.9600
C8—H8 0.9300 C19—H19B 0.9600
C9—C10 1.385 (2) C19—H19C 0.9600
C9—N3 1.425 (2) N1—N2 1.363 (2)
C10—O1 1.3801 (19) N3—S1 1.6106 (14)
C11—O1 1.428 (2) N3—H1N 0.8390
C11—C12 1.506 (3) O2—S1 1.4358 (15)
C11—H11A 0.9700 O3—S1 1.4338 (15)
C2—C1—H1A 120.0 C11—C12—H12C 109.5
C2—C1—H1B 120.0 H12A—C12—H12C 109.5
H1A—C1—H1B 120.0 H12B—C12—H12C 109.5
C1—C2—C3 123.2 (3) C18—C13—C14 120.21 (15)
C1—C2—H2 118.4 C18—C13—S1 120.10 (13)
C3—C2—H2 118.4 C14—C13—S1 119.68 (13)
N1—C3—C2 112.82 (16) C15—C14—C13 119.75 (16)
N1—C3—H3A 109.0 C15—C14—H14 120.1
C2—C3—H3A 109.0 C13—C14—H14 120.1
N1—C3—H3B 109.0 C14—C15—C16 119.95 (16)
C2—C3—H3B 109.0 C14—C15—H15 120.0
H3A—C3—H3B 107.8 C16—C15—H15 120.0
N2—C4—C5 112.59 (15) O4—C16—C17 124.04 (16)
N2—C4—Cl1 119.34 (13) O4—C16—C15 115.67 (16)
C5—C4—Cl1 128.07 (14) C17—C16—C15 120.29 (15)
C10—C5—C6 120.30 (15) C16—C17—C18 119.33 (17)
C10—C5—C4 136.61 (15) C16—C17—H17 120.3
C6—C5—C4 103.08 (15) C18—C17—H17 120.3
N1—C6—C7 131.36 (16) C13—C18—C17 120.43 (17)
N1—C6—C5 107.00 (15) C13—C18—H18 119.8
C7—C6—C5 121.61 (16) C17—C18—H18 119.8
C8—C7—C6 116.83 (15) O4—C19—H19A 109.5
C8—C7—H7 121.6 O4—C19—H19B 109.5
C6—C7—H7 121.6 H19A—C19—H19B 109.5
C7—C8—C9 122.74 (16) O4—C19—H19C 109.5
C7—C8—H8 118.6 H19A—C19—H19C 109.5
C9—C8—H8 118.6 H19B—C19—H19C 109.5
C10—C9—C8 120.76 (16) C6—N1—N2 111.39 (14)
C10—C9—N3 119.00 (15) C6—N1—C3 128.29 (16)
C8—C9—N3 120.16 (14) N2—N1—C3 120.30 (16)
O1—C10—C9 121.44 (16) C4—N2—N1 105.93 (14)
O1—C10—C5 120.56 (15) C9—N3—S1 124.38 (12)
C9—C10—C5 117.75 (15) C9—N3—H1N 117.2
O1—C11—C12 108.46 (19) S1—N3—H1N 118.3
O1—C11—H11A 110.0 C10—O1—C11 115.14 (13)
C12—C11—H11A 110.0 C16—O4—C19 117.56 (16)
O1—C11—H11B 110.0 O3—S1—O2 120.14 (10)
C12—C11—H11B 110.0 O3—S1—N3 104.96 (9)
H11A—C11—H11B 108.4 O2—S1—N3 109.07 (8)
C11—C12—H12A 109.5 O3—S1—C13 107.67 (8)
C11—C12—H12B 109.5 O2—S1—C13 106.96 (8)
H12A—C12—H12B 109.5 N3—S1—C13 107.45 (8)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N3—H1N···N2i 0.84 2.11 2.931 (2) 166
C19—H19A···O3ii 0.96 2.37 3.285 (2) 159
C3—H3B···O2iii 0.97 2.47 3.418 (3) 165

Symmetry codes: (i) −x, y−1/2, −z+1; (ii) x+1, y, z+1; (iii) x+1, y, z.

Footnotes

Supporting information for this paper is available from the IUCr electronic archives (Reference: SU2771).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814018492/su2771sup1.cif

e-70-o1029-sup1.cif (25.6KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814018492/su2771Isup2.hkl

e-70-o1029-Isup2.hkl (274.4KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814018492/su2771Isup3.cml

. DOI: 10.1107/S1600536814018492/su2771fig1.tif

A view of the mol­ecular structure of the title mol­ecule, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level.

. DOI: 10.1107/S1600536814018492/su2771fig2.tif

A partial view of the crystal packing of the title compound. The hydrogen bonds are shown as dashed lines (see Table 1 for details).

CCDC reference: 1019238

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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