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. 2014 Oct 15;25(20):3095–3104. doi: 10.1091/mbc.E13-09-0530

Caenorhabditis elegans chaperonin CCT/TRiC is required for actin and tubulin biogenesis and microvillus formation in intestinal epithelial cells

Keiko Saegusa a, Miyuki Sato b, Katsuya Sato a, Junko Nakajima-Shimada c, Akihiro Harada d,1, Ken Sato a,1
Editor: Jeffrey D Hardine
PMCID: PMC4196862  PMID: 25143409

Caenorhabditis elegans chaperonin CCT is required for the biogenesis of actin and tubulin and is thereby essential for microvillus formation in intestinal cells. Loss of CCT/TRiC had no strong effects on intermediate filament protein IFB-2 or cytoskeletal linker protein ERM-1, suggesting that CCT/TRiC exhibits clear substrate specificity in living animals.

Abstract

Intestinal epithelial cells have unique apical membrane structures, known as microvilli, that contain bundles of actin microfilaments. In this study, we report that Caenorhabditis elegans cytosolic chaperonin containing TCP-1 (CCT) is essential for proper formation of microvilli in intestinal cells. In intestinal cells of cct-5(RNAi) animals, a substantial amount of actin is lost from the apical area, forming large aggregates in the cytoplasm, and the apical membrane is deformed into abnormal, bubble-like structures. The length of the intestinal microvilli is decreased in these animals. However, the overall actin protein levels remain relatively unchanged when CCT is depleted. We also found that CCT depletion causes a reduction in the tubulin levels and disorganization of the microtubule network. In contrast, the stability and localization of intermediate filament protein IFB-2, which forms a dense filamentous network underneath the apical surface, appears to be superficially normal in CCT-deficient cells, suggesting substrate specificity of CCT in the folding of filamentous cytoskeletons in vivo. Our findings demonstrate physiological functions of CCT in epithelial cell morphogenesis using whole animals.

INTRODUCTION

The plasma membrane of most epithelial cells in animals is separated into apical and basolateral membranes by cell–cell junctions (Rodriguez-Boulan et al., 2005). The apical surface of intestinal epithelial cells contains characteristic membrane structures known as microvilli. These structures are plasma membrane protrusions containing tightly bundled actin microfilaments. Microvilli expand the cell surface area of the apical region and are believed to support efficient nutrient absorption or filtration. Although various proteins, including actin-bundling and membrane linker proteins and specific lipids, have been identified as key molecules for establishment of the microvillus brush border, our understanding of the molecular mechanisms underlying microvillus formation in vivo is still limited (Nambiar et al., 2010; Gloerich et al., 2012; Ikenouchi et al., 2013).

Caenorhabditis elegans is a useful model for studying the mechanism(s) of the formation and maintenance of polarized epithelial cells. In C. elegans, the intestine forms a simple tube made up of 20 polarized cells, with apical (lumenal) and basolateral membranes (McGhee, 2007; McGhee et al., 2009). The apical membranes of worm intestinal cells form a number of microvilli similar to those observed in mammalian epithelial cells. The cytoskeleton, comprising microfilaments, microtubules, and intermediate filaments, plays an essential role in the formation and maintenance of the epithelial cell structure. Of the five actin genes in the C. elegans genome, act-5 is specifically expressed in intestinal and excretory cells, whereas the other actin genes are widely expressed in many tissues (Waterston et al., 1984; MacQueen et al., 2005). Deletion of act-5 results in complete loss of microvilli in the intestine and leads to lethality during the first larval stage. These findings indicate that the ACT-5 protein is essential for microvillus formation and that microvilli are essential structures for animal viability (MacQueen et al., 2005). The intermediate filaments have a long, central α-helical rod domain with heptad repeats that form a dimer (Carberry et al., 2009). IFB-2 and IFC-2, which are intermediate filaments expressed in the intestine of C. elegans, are localized to the subapical layer of the “terminal web” and form a dense filamentous network (Bossinger et al., 2004; Karabinos et al., 2004; Segbert et al., 2004; Carberry et al., 2009). Knockdown of these intestinal intermediate filaments results in an abnormal, bubble-like morphology of the apical membrane, suggesting the importance of intermediate filaments in maintaining the apical membrane structure of intestinal tubes (Bossinger et al., 2004; Hüsken et al., 2008). Microtubules play an essential role in polarization of the intestinal primordium, although their specific functions in differentiated intestinal cells are not well understood in C. elegans. In intestinal primordial cells that are beginning to polarize, microtubules are concentrated near the apical surface, extend along the lateral surface, and to a lesser extent localize to the basal region (Leung et al., 1999; Feldman and Priess, 2012). Inhibition of microtubule formation causes a delay in nuclear migration to the apical surface and cytoplasmic polarization (Leung et al., 1999). Several genes, including ERM-1 and IFO-1, have been identified to regulate apical morphogenesis in the intestinal cells of C. elegans (Gobel et al., 2004; Carberry et al., 2012).

The folding of cytoskeletal components is largely dependent upon the eukaryotic cytosolic chaperonin containing TCP-1 (CCT), which is also known as the TCP-1 ring complex (TRiC; Horwich et al., 2007). CCT forms a hetero-oligomeric double-ring complex with eight subunits per ring (CCTα, β, γ, δ, ε, ζ, η, and θ in mammals) and functions as an ATP-dependent molecular chaperone required for correct folding of many cytosolic proteins, such as actin and tubulin (Yaffe et al., 1992; Sternlicht et al., 1993; Kubota et al., 1994, 1995; Gutsche et al., 1999; Llorca et al., 1999, 2000; Dekker et al., 2008). CCT is also known to prevent aggregation of polyglutamine (polyQ) proteins, which cause cytotoxicity and lead to neurodegenerative disorders, including Huntington's disease (Nollen et al., 2004; Kitamura et al., 2006). The C. elegans genome contains eight genes encoding the individual CCT subunits (cct-1 to cct-8) (Leroux and Candido, 1995a, b, 1997; Matus et al., 2010). These genes are ubiquitously expressed during all developmental stages and are essential for embryogenesis (Leroux and Candido, 1995a, b, 1997). In C. elegans, CCT is important for tubulin folding and microtubule growth in the early embryo (Srayko et al., 2005; Lundin et al., 2008). Although the function of CCT is known to be required for proper folding of actin and tubulin in yeast and cultured cells, its physiological roles in whole multicellular organisms remain elusive.

In this study, we sought to elucidate the mechanism(s) underlying the morphogenesis of epithelial cells. We found that a CCT-dependent actin supply is essential for the proper construction and maintenance of microvilli and the overall apical membrane structures in intestinal cells. These results demonstrate a physiological function of CCT in whole animals.

RESULTS

Chaperonin is required for normal apical morphology and intracellular trafficking in intestinal cells

To gain insight into how polarized epithelial cells are established and maintained, we searched for genes whose RNA interference (RNAi) knockdown affected either the localization of apical or basolateral marker proteins or the membrane morphology visualized by these markers. We chose P-glycoprotein-1 (PGP-1) and syntaxin-1 (SYN-1) as marker proteins of apical and basolateral membranes, respectively, and expressed these proteins with green fluorescent protein (GFP) tags (Figure 1, A and C; Sato et al., 2011). We found that RNAi of cct-5 encoding the ε-subunit of the CCT complex resulted in the formation of bubble-shaped aberrant membrane structures on the apical membrane of intestinal cells when L1 larvae were incubated on RNAi plates for 3 d (Figure 1B, inset, arrows). In such animals, GFP-PGP-1 was still mainly localized to the apical membrane, but a part of the protein also accumulated on cytoplasmic punctate structures (Figure 1B, arrowheads). When these animals were fed with Texas Red–dextran, it labeled the bubble-shaped aberrant membrane structures on the apical membrane, confirming that they were composed of deformed apical plasma membrane (Figure 1F). There were some GFP-PGP-1–positive cytoplasmic punctate structures that were not labeled with Texas Red–dextran (Figure 1G), suggesting that part of the GFP-PGP-1 was retained in intracellular compartments. The signals for Texas Red–dextran were restricted in the intestinal lumen and were not observed in the pseudocoelom of cct-5(RNAi) animals, suggesting that the barrier properties of the intestinal cells were maintained (Figure 1, F and G). On the other hand, GFP-SYN-1 was largely localized to the basolateral membrane in cct-5(RNAi) animals, although part of the GFP-SYN-1 was also detected on mesh-like structures near the lateral region and the cell periphery (Figure 1D). These results show that cct-5(RNAi) causes abnormal apical membrane structures and also partially affects the transport of apical and basolateral membrane proteins. Even in cct-5(RNAi) animals, we did not observe any mistargeting of GFP-PGP-1 or GFP-SYN-1 to the opposite plasma membrane domains (Figure 1, B and D). We further confirmed that the localizations of GFP-PGP-1 and mCherry-SYN-1 did not overlap even after cct-5 RNAi (Supplemental Figure S1).

FIGURE 1:

FIGURE 1:

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CCT-5 is required for the normal apical morphology of intestinal cells. (A–D) In the wild-type intestine, GFP-PGP-1 and GFP-SYN-1 are localized to the apical and basolateral membranes, respectively (A, C). In cct-5(RNAi) animals, GFP-PGP-1 is largely targeted to the apical membrane but partly localized on abnormal, bubble-like membrane structures (B, inset, arrows) and internal vesicles (B, arrowheads). GFP-SYN-1 is mainly targeted to the basolateral membrane in cct-5(RNAi) animals (D), whereas strong GFP signals are also observed in cytoplasmic structures proximal to the lateral membrane (D, inset). An enlarged (×2) image of the boxed area is shown in each inset (B, D). (E–G) Worms expressing GFP-PGP-1 (green) were fed with Texas Red–dextran (red) and observed by confocal microscopy. The apical bubble-like structures formed in cct-5(RNAi) animals are filled with Texas Red–dextran (F, insets). In addition, there are some GFP-PGP-1–labeled cytoplasmic punctate structures that do not contain Texas Red–dextran (G, insets). In all experiments, L1 larvae were treated with RNAi for 3 d. Scale bars, 10 μm.

When cct-5 RNAi was started at L1 larvae (L1 RNAi), the animals were arrested around the L3 larval stage. Meanwhile, L3 larvae treated with cct-5 RNAi (L3 RNAi) reached adulthood. When L4 larvae were subjected to RNAi, cct-5 RNAi induced a severe embryonic lethality or larval arrest phenotype in the F1 generation (Supplemental Figure S2C). Immunostaining using an anti–CCT-5 antibody showed that CCT existed diffusely in the cytoplasm but less in the nucleus, and the staining was abolished by cct-5 RNAi (Supplemental Figure S2, A and B).

CCT depletion results in actin loss from microvilli and formation of actin aggregates in the cytoplasm

We examined whether loss of CCT function affected the biogenesis of ACT-5, the microvillus-specific actin, in intestinal cells, using mCherry-tagged ACT-5 (mC-ACT-5). Expression of mC-ACT-5 in act-5(ok1397)-knockout animals rescued the larval lethality, indicating that the fusion protein was functional (unpublished data). In mock-treated animals, mC-ACT-5 was specifically localized to the apical membrane of the intestinal cells (Figure 2A). When L1 or L3 larvae were treated with cct-5 RNAi, mC-ACT-5 formed large aggregates in the cytoplasm in both cases (Figures 2B and 3E). We confirmed that the signal of these mC-ACT-5 aggregates was distinct from autofluorescence of gut granules (Supplemental Figure S3). Because RNAi knockdown of other CCT subunits resulted in similar phenotypes in terms of abnormal mC-ACT-5 localization (Supplemental Figure S2D), we mainly examine cct-5 hereafter. Defects in the GFP-PGP-1 and mC-ACT-5 localizations were observed throughout the intestine of the cct-5(RNAi) animals (Supplemental Figure S2E). Immunostaining analysis of endogenous actin was conducted using a monoclonal anti–pan-actin antibody that recognized ubiquitously expressed actins but not ACT-5 (Figure 2, C and D). In the wild-type intestine, we observed strong staining of actin in the cortical region and in a number of cytosolic small puncta within intestinal cells but only weak staining of microvillar actin (Figure 2C), as reported previously (MacQueen et al., 2005). In the cct-5(RNAi) animals, a large amount of endogenous actin accumulated in large aggregates (Figure 2D, large arrows). Such actin aggregates were also observed in the body wall muscles of the cct-5(RNAi) animals (Supplemental Figure S4B). The cct-5(RNAi) animals showed reduced thrashing movements when swimming in a buffer, suggesting defects in neuromuscular functions (Supplemental Figure S4C). We confirmed the efficiency of cct-5 knockdown with an anti–CCT-5 antibody (Figure 2E). Using Western blotting, we detected CCT-5 as a single band of ∼60 kDa in mock-treated animal lysates. The signal intensity of CCT-5 was greatly reduced after specific RNAi, confirming efficient knockdown and the specificity of the antibody. We also examined whether the actin protein levels were affected by the loss of CCT function (Figure 2E). RNAi of cct-5 did not appear to affect the levels of ACT-5 or other actin molecules, indicating that the aggregates including actin were not efficiently removed from the cytoplasm.

FIGURE 2:

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Depletion of CCT-5 causes aggregation of actin in intestinal cells. (A, B) Subcellular localizations of mCherry-ACT-5 (mC-ACT-5) in mock-treated or cct-5(RNAi) animals. The expression pattern of mC-ACT-5 in mock-treated animals is limited to the apical microvilli within the intestine (A). In cct-5(RNAi) animals, mC-ACT-5 forms large aggregates in the cytoplasm (B). The images show the results of L1 RNAi treatment. (C, D) Subcellular localizations of endogenous actin in intestinal cells. Endogenous actin is localized to the cortical region (arrowheads) and cytoplasmic structures (arrows) in the intestine of mock-treated animals (C). In the intestine of cct-5(RNAi) animals, many actin aggregates are observed in the cytoplasm (D, large arrows). (E) The actin protein levels are unaltered in cct-5–deficient animals. In C–E, L3 larvae were treated with RNAi for 3 d. Scale bars, 10 μm.

FIGURE 3:

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Actin forms aggregates in the absence of CCT function. (A–I) Actin aggregates in cct-5–deficient animals do not contain F-actin. Disruption of CCT function results in a reduced amount of F-actin in microvilli. Mock-treated and cct-5(RNAi) worms expressing mC-ACT-5 (B, E, H) were stained with phalloidin to visualize F-actin (A, D, G). Merged images are shown in C, F, and I. Enlarged (×4) images of the boxed areas in D–F are shown in G–I, respectively. Microvillus enrichment of F-actin is observed in mock-treated animals (A) and also in cct-5(RNAi) animals but to a lesser extent (D). The cytoplasmic actin aggregates in cct-5(RNAi) animals are not positive for phalloidin (G–I, arrowheads). Scale bars, 10 μm. (J–M) FRAP analysis of mC-ACT-5 on aggregated structures. Left to right: before photobleaching (Prebleach; J), immediately after bleaching (0 min; K), and 30 min after bleaching (L). The squares indicate the photobleached areas. For the graph, the fluorescence intensities in the squares were measured and provided as relative intensities based on the initial value before bleaching. Graphs indicate the results of five individual experiments (M). In these experiments, L3 larvae were treated with RNAi for 2 d.

We further investigated whether CCT disruption affected the level of F-actin in intestinal cells (Figure 3, A–I). In mock-treated animals, phalloidin was mainly observed in microvilli of the apical surface and colocalized with mC-ACT-5 (Figure 3, A–C). In cct-5(RNAi) animals, phalloidin signals were also observed in microvilli but to a lesser extent (Figure 3, D–I), and no colocalization with mC-ACT-5–positive aggregates was observed, indicating that the mC-ACT-5 aggregates contained very little F-actin. As a measure of molecular exchange, we subjected mC-ACT-5–labeled aggregates to fluorescence recovery after photobleaching (FRAP) analysis (Figure 3, J–M). The fluorescence recovery in individual aggregates was very slow, indicating that mC-ACT-5 associated with the aggregates was rarely exchanged with external pools.

Chaperonin is required for correct intestinal microvillus formation

To characterize the aberrant apical membrane structures in cct-5(RNAi) animals, we examined transgenic animals that expressed both GFP-PGP-1 and mC-ACT-5 in intestinal cells (Figure 4, A–I). We found that GFP-PGP-1 and mC-ACT-5 colocalized on the apical membrane in mock-treated animals (Figure 4, A–C). In cct-5(RNAi) animals, mC-ACT-5 colocalized with GFP-PGP-1 on the apical region with a smooth morphology but was absent in the bubble-like membrane structures, which were GFP-PGP-1 positive (Figure 4, D–I). Consistently, act-5-knockout animals expressing GFP-PGP-1 also displayed these bubble-like membrane structures of the apical surface (Figure 4, J–L). GFP-PGP-1 was largely localized on the apical membrane even in act-5-knockout animals, suggesting that the apicobasal polarity was maintained in the absence of the microvillar actin (Figure 4, J–L).

FIGURE 4:

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Abnormal apical membrane structures in CCT-deficient animals are caused by loss of ACT-5 from the microvilli. (A–I) The subcellular localizations of GFP-PGP-1 and mC-ACT-5 were observed in the intestines of mock-treated (A–C) or cct-5(RNAi) (D–I) animals. Depletion of CCT-5 results in less mC-ACT-5 in part of apical membrane, resulting in abnormal, bubble-like, GFP-PGP-1–positive structures (G–I, arrows). Merged images are shown in C, F, and I. Enlarged (×4) images of the boxed area in D–F are shown in G–I, respectively. Scale bars, 10 μm. The images show the results of L1 RNAi treatment. (J–L) Depletion of ACT-5 results in abnormal GFP-PGP-1–positive structures on the apical membrane. The subcellular localization of GFP-PGP-1 was observed in L1 larvae of the act-5(ok1397)-knockout animals. Note that GFP-PGP-1 is localized to the bubble-like membrane structures (arrows) connected to the apical membrane (arrowheads). Scale bars, 10 μm.

We further sought to define the defects in the intestines of CCT-deficient animals by electron microscopy. In the intestinal cells of wild-type animals, we observed a number of ordered, finger-like projections corresponding to microvilli anchored in the electron-dense terminal web underneath the apical membrane (Figure 5, A and C). Depletion of CCT functions resulted in a significant decrease in the length of the microvilli (p < 0.01), although the terminal web was still observed (Figure 5, B, D, and E). In cct-5(RNAi) animals, the interval of each microvillus appeared irregular, and the microvilli were sparse in some regions. These observations demonstrate that the CCT activity is required for normal organization of intestinal microvilli. In addition to the defects in microvilli, large vacuoles, electron-dense granules, and tubules were observed in the cytoplasm of the cct-5(RNAi) intestine. Undigested bacteria were often observed in the intestinal lumen of these animals, suggesting defects in food digestion and absorption (Figure 5, B and D).

FIGURE 5:

FIGURE 5:

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Electron microscopy analysis of wild-type and cct-5(RNAi) animals. (A–D) Electron micrographs of intestinal cross sections from wild-type and cct-5(RNAi) animals. (A, C) Mock-treated animals have a normal intestinal organelle distribution and highly ordered microvilli. The tubular network of the endoplasmic reticulum, vesicles, and granules are also observed. (B, D) In cct-5(RNAi) animals, the microvilli are reduced in size and sparse in some areas, although the terminal web is observed (white arrowheads). Two lumens are observed in a single section (asterisks in B and D). Electron-dense granules (black arrowhead in D), tubules (black arrow in B), and vacuoles (white arrow in D) are also observed in the cytoplasm. Undigested bacteria often accumulate in the gut lumen of cct-5(RNAi) animals. Scale bars, 1 μm. (E) Loss of CCT functions resulted in a significant decrease in the length of the microvilli. The lengths of the microvilli were quantified in mock and cct-5 (RNAi) animals and statically analyzed by Student's t test. Results are shown as a mean ± SD of the length of microvilli (n = 147 from three animals or n = 182 from five animals for mock or cct-5 (RNAi) animals, respectively). **p < 0.01.

Loss of CCT impairs tubulin biogenesis and microtubule formation

We further determined whether CCT depletion affected microtubules, using α-tubulin immunostaining (Figure 6, A–D). In mock-treated animals, α-tubulin was concentrated in the subapical region and on filamentous structures underneath the basal membrane (Figure 6, A and B). The antibody used also resulted in staining of a fine meshwork in the cytoplasm (Figure 6A). Depletion of CCT functions by L3 RNAi resulted in a reduction of the overall α-tubulin signals (Figure 6, C and D) and disorganization of the cytoplasmic microtubule structures (Figure 6C). The steady-state level of endogenous α-tubulin was reduced by ∼70% (Figure 6E). These results show that CCT is required for proper tubulin biogenesis in vivo. We also directly examined the effect of tubulin deficiency on the apical membrane morphology. When tba-2 was subjected to knockdown from the L1 larval stage, GFP-PGP-1 accumulated in cytoplasmic large punctate structures, indicating that microtubules were required for intracellular transport of GFP-PGP-1 during the larval stages (Figure 6, F and G). In addition, the severe loss of α-tubulin caused aggregation of mC-ACT-5, suggesting that the interplay between microtubules and actin microfilaments was required to maintain the integrity of polarized intestinal cells (Figure 6G). In contrast, when tba-2 was subjected to knockdown from the L3 larval stage, the localizations of GFP-PGP-1 and mC-ACT-5 were hardly affected (Figure 6H). Under this condition, the total protein level of α-tubulin was markedly reduced (Figure 6I). These observations imply that tubulin is essential for actin localization and intracellular transport in growing larvae but to a lesser extent in adult animals. These findings also imply that the abnormal apical membrane structure caused by cct-5 RNAi in adult animals is independent of tubulin deficiency.

FIGURE 6:

FIGURE 6:

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CCT is required for tubulin biogenesis and the formation of microtubules. (A–D) Animals expressing mC-ACT-5 were stained with an anti–α-tubulin antibody. In the intestines of mock-treated animals, the anti–α-tubulin antibody stains the cell cortex (A) and the tubular network underneath the plasma membrane (B). In cct-5(RNAi) animals, the tubulin signals in the cortex are reduced, and thicker and shorter microtubules are often observed near the plasma membrane (C, D). mC-ACT-5 and merged images are also shown. An enlarged (×2) image of the boxed area is shown in each inset (B, D). Scale bars, 10 μm. (E) Levels of actin, α-tubulin, and IFB-2 proteins in cct-5(RNAi) animals. In A–E, L3 larvae were subjected to RNAi for 2 d. (F–H) TBA-2, one of the α-tubulin proteins in C. elegans, was depleted by L1 or L3 RNAi in transgenic animals coexpressing GFP-PGP-1 and mC-ACT-5. L1 larvae were incubated for 3 d, and L3 larvae were incubated for 2 d on RNAi plates. The tba-2 RNAi at L1 results in abnormal apical membrane structures (arrows) and mC-ACT-5 aggregation (arrowheads) (G). In contrast, tba-2 RNAi from the L3 stage exhibits a normal GFP-PGP-1 localization and no aggregates of mC-ACT-5 (H). Scale bars, 10 μm. (I) Western blotting confirms that the total α-tubulin level is greatly reduced under the L3 RNAi condition. This result also suggests that tba-2 RNAi is sufficient to reduce the total α-tubulin protein level, although C. elegans has multiple α-tubulin genes in the genome. (J, K) L3 animals expressing mC-ACT-5 were treated with RNAi for 2 d and stained with an anti-IFB-2 antibody. IFB-2 is detected in the apical cytocortex of intestinal cells from mock-treated (J) and cct-5(RNAi) (K) animals. mC-ACT-5 and merged images are also shown. Scale bars, 10 μm.

In contrast to actin and tubulin, the loss of the CCT function did not strongly affect the localization and stability of intestine-specific intermediate filament IFB-2 (Figure 6, J and K). The C. elegans genome contains 11 genes encoding intermediate filaments, comprising a central α-helical rod domain and regularly spaced hydrophobic residues (Carberry et al., 2009). Among these intermediate filaments, IFB-2 is expressed in the intestinal cells and is present in the electron-dense subapical layer of the terminal web and the junction-associated plaque materials (Bossinger et al., 2004). In the mock-treated animals, IFB-2 was localized to the subapical region just beneath mC-ACT-5 (Figure 6J). The localization and amount of IFB-2 appeared unchanged in cct-5(RNAi) animals, although mC-ACT-5 formed aggregates in the cytosol (Figure 6K). The apical localization of ERM-1, a cytoskeletal linker protein of the ERM family required for epithelial integrity (van Fürden et al., 2004), was not strongly affected in the cct-5–deficient intestinal cells under this RNAi condition (Supplemental Figure S5, A and B). The localization of the intestine filament organizer IFO-1 (Carberry et al., 2012) was also unaffected in cct-5(RNAi) animals (Supplemental Figure S5, C and D). These results suggest that CCT acts more specifically on actin and tubulin in the intestinal cells.

DISCUSSION

In this study, we showed that CCT is important for the biogenesis of actin and tubulin in the intestines of intact whole organisms. In particular, we showed that CCT activity is essential for the formation and maintenance of microvilli in intestinal epithelial cells. Because the apical surface of intestinal epithelial cells is covered by microvillar protrusions, high levels of actin synthesis and folding activities are necessary in these cells. A CCT-dependent actin supply is also required to maintain the overall morphology of the apical surface. When CCT was subjected to knockdown, the subapical regions lacking actin localization were deformed and appeared as bubble-like structures.

In C. elegans intestinal cells, the loss of CCT function caused aggregation of actin and tubulin in the cytoplasm (Figures 2 and 6). However, the stability and localization of IFB-2 and ERM-1 appeared unaffected in cct-5–deficient cells under this condition, suggesting a substrate-specific function of CCT in vivo (Figure 6 and Supplemental Figure S5). Although CCT was originally believed to function specifically for actin and tubulin, recent studies revealed that it acts on more diverse substrates, comprising 9–15% of newly synthesized proteins in the range of 30–60 kDa (Thulasiraman et al., 1999; Yam et al., 2008). CCT can recognize a wide range of polypeptides, and CCT substrates share a number of similar properties. As an example, the CCT substrates Gβ-transducin (Kubota et al., 2006) and CDC20 (Camasses et al., 2003) share common motifs, such as the WD40 repeat. Various approaches demonstrated that many CCT substrates show a high β-sheet propensity and/or a low α-helical content, which is predicted to confer slow folding kinetics and make these proteins more prone to aggregation (Yam et al., 2008). Given that IFB-2 has a long α-helical rod domain but neither a WD40 domain nor β-sheet propensity, it may not be an adequate substrate for CCT and could be folded by other chaperones such as HSP70, HSP90, and small heat shock proteins (Liang and MacRae, 1997). Such structural differences may account for the relatively moderate effects of CCT depletion on intermediate filament formation.

Although CCT activity is required for the folding of actin and tubulin molecules, the fates of unfolded actin and tubulin are different. The total levels of α-tubulin were obviously reduced in the cct-5 mutant animals, suggesting that the unfolded tubulin molecules were degraded. In contrast, the protein levels of both cytosolic and microvillar actin were unchanged in the cct-5–deficient animals. Consistent with these observations, similar results have been reported in mammalian cultured cells (Grantham et al., 2006). Unfolded actin formed large, stable aggregates in the cytoplasm that showed little exchange activity with external pools. These findings suggest that unfolded actin molecules tend to form aggregates that were not efficiently degraded. It has been reported that some mutations in cardiac α-actin, which cause hypertrophic or dilated cardiomyopathy, produce mutant proteins that are not efficiently folded by CCT (Vang et al., 2005). Such mutant actin molecules are stable in the cytoplasm and can be recovered from the insoluble fraction using Triton X-100, suggesting that it is a general nature of unfolded actin molecules to form aggregates rather than undergo degradation (Vang et al., 2005).

We showed that tubulin depletion during the larval stages causes severe defects in actin localization and GFP-PGP-1 transport. In contrast, when tubulin was subjected to knockdown from L3 larvae, its effect on actin organization and transport appeared relatively mild. These results suggest that the phenotypes observed in cct-5 L3 RNAi animals were mostly dependent on actin deficiency rather than tubulin deficiency. To maintain microvillar structures, a continuous CCT-mediated actin supply appears to be essential. These observations also imply that tubulin is particularly important for microfilament organization and intracellular trafficking when cells are expanding their volume but to a lesser extent once cells have finished expansion in adulthood.

Mutations in the human CCT5 gene reportedly cause mutilating sensory neuropathy with spastic paraplegia, and mutations in the rat CCT4 gene cause heredity sensory neuropathy (Lee et al., 2003; Bouhouche et al., 2006). The requirements for CCT activity could be especially high in polarized cells such as neuronal and epithelial cells. Although the precise mechanisms of these diseases are not understood, one possibility is that the loss of correctly folded actin or tubulin in the absence of CCT function could disturb the integrity of the cytoskeleton, leading to neurodegeneration. Alternatively, the aggregates of CCT substrates, such as actin in the cytoplasm, could be cytotoxic to neuronal cells, as observed in polyQ diseases (Nollen et al., 2004; Kitamura et al., 2006). Further analyses using C. elegans would be useful to clarify the molecular mechanisms underlying chaperone-related diseases as well as the in vivo functions of CCT.

MATERIALS AND METHODS

C. elegans strains

Handling and culturing of C. elegans were conducted as described previously (Brenner, 1974). Strains expressing GFP- or mCherry-tagged proteins were grown at 20°C. The wild-type parent for all strains was C. elegans var Bristol strain N2. The unc-119(ed3) mutant (Maduro and Pilgrim, 1995) and VC971 (+/mT1 II; act-5(ok1397)/mT1[dpy-10(e128)] III) were obtained from the Caenorhabditis Genetic Center (University of Minnesota, Minneapolis, MN). The transgenic strains used were dkIs259[Pact-5-GFP-pgp-1; unc-119(+)], dkIs218[Popt-2-GFP-syn-1; Cb.unc-119(+)] and dkIs247[Pact-5-mCherry-HA-act-5; Cb.unc-119(+)] (Sato et al., 2011).

RNAi

We conducted RNAi experiments using a feeding method (Timmons et al., 2001). L1 larvae were placed on nematode growth medium agar plates containing 5 mM isopropyl β-d-thiogalactopyranoside (IPTG) and Escherichia coli (strain HT115(DE3)) carrying double-stranded RNA expression constructs and allowed to grow at 20°C for 3 d. Otherwise, L3 larvae were incubated on RNAi plates at 20°C for 2 or 3 d and allowed to grow to the adult stage. The RNAi constructs fed to the animals contained a genomic DNA fragment of the cct-5 gene, all other cct genes, or tba-2 and were obtained from the Ahringer Genomic RNAi Library (Kamath and Ahringer, 2003). As a negative control, L4440 harboring a cDNA encoding the human transferrin receptor was used (Sato et al., 2006).

Antibodies and Western blotting

We prepared a cDNA encoding cct-5 from an EST clone (yk1389a05) provided by Yuji Kohara (National Institute of Genetics, Mishima, Japan) and cloned this into the pET24b expression vector (Invitrogen, Tokyo, Japan). A 6×histidine (His)-tagged recombinant protein was expressed in E. coli strain Rosetta (Merck, Tokyo, Japan) at 20°C for 8 h in the presence of 0.1 mM IPTG and purified using a Nickel Sepharose 6 Fast Flow column (GE Healthcare Biosciences, Uppsala, Sweden) under denaturing conditions according to the manufacturer's instructions. A keyhole limpet hemocyanin (KLH)–conjugated peptide selected from C. elegans ACT-5 (NH2-C+VAHDFESELAAA-COOH) as previously described (MacQueen et al., 2005) was produced by Operon Biotechnologies (Tokyo, Japan). Purified proteins and peptides were used for antibody production in rabbits at TK Craft Corp. (Gunma, Japan). To examine the amounts of endogenous CCT-5 and ACT-5, total lysates were prepared from 50 adult hermaphrodites and subjected to Western blotting as described previously (Sato et al., 2006). A monoclonal anti–pan-actin antibody (C4) was purchased from Millipore (Tokyo, Japan), and an anti-α-tubulin antibody (DM1a) was purchased from Sigma-Aldrich (Tokyo, Japan). Monoclonal anti–IFB-2 (MH33) and anti–ERM-1 (ERM1) antibodies developed by R. H. Waterston and M. L. Nonet, respectively, were obtained from the Developmental Studies Hybridoma Bank (University of Iowa, Iowa City, IA).

Construction of the strain expressing IFO-1–GFP

A destination vector, pPD117.01­GtwyB(Asp718), was kindly provided by Barth D. Grant (Rutgers University, Piscataway, NJ) and contained a Gateway cassette B upstream of GFP. The mec-7 promoter of pPD117.01GtwyB(Asp718) was replaced by the act-5 promoter (pKS17). The cDNA fragment of ifo-1 was cloned into pKS17 using Gateway recombination technology (Invitrogen). A transgenic line (dkIs749[Pact-5-ifo-1-GFP; unc-119(+)]) was created using the microparticle bombardment method as described previously (Praitis et al., 2001). For a selection marker, the wild-type unc-119 fragment was introduced simultaneously.

Immunostaining and microscopy

To observe live worms expressing transgenes, we mounted worms on agarose pads with 20 mM levamisole in M9 buffer (Sato et al., 2008). Staining of dissected intestines was conducted as described previously (Grant and Hirsh, 1999; Sato et al., 2006). Dissected intestines for α-tubulin, IFB-2, and ERM-1 staining were fixed in precooled (−20°C) methanol for 5 min. For pan-actin staining, dissected intestines were fixed in 3.7% formaldehyde/I-T solution (136 mM NaCl, 9 mM KCl, 1 mM CaCl2, 3 mM MgCl2, 77 mM glucose, 5 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid [HEPES]–KOH, pH 7.4; Teramoto and Iwasaki, 2006) and fixed in precooled (−20°C) methanol for 5 min. For phalloidin staining, dissected intestines were fixed in 1 ml of fresh 1.25% paraformaldehyde/I-T solution at room temperature for 10 min. After fixation, the dissected intestines were washed four times in 1 ml of PTB buffer (1% bovine serum albumin [BSA], 1× phosphate-buffered saline [PBS], 0.1% Tween-20, 0.05% NaN3, 1 mM EDTA) for 30 min at room temperature. The dissected intestines were then incubated with anti–pan-actin (C4; 1:1000 dilution), anti–α-tubulin (DM1a; 1:500), anti–IFB-2 (MH33; 1:100), and anti–ERM-1 (ERM1; 1:500) antibodies or Alexa Flour 488–phalloidin (1:1000) diluted in PTB buffer at 4°C overnight. After washing with PTC buffer (0.1% BSA, 1× PBS, 0.1% Tween-20, 0.05% NaN3, 1 mM EDTA) four times, the samples were incubated with the appropriate secondary antibody conjugated to Alexa Fluor 488 (1:1000; Life Technologies Tokyo, Japan) at 4°C overnight. Whole-mount immunofluorescence staining of muscles was performed as described previously (Sato et al., 2009). Images were obtained using an FV1000 or FV1200 confocal microscopy system (Olympus, Tokyo, Japan). Electron microscopy of C. elegans samples was conducted as described previously (Sato et al., 2011).

Texas Red–dextran feeding assay

L1 larvae expressing GFP-PGP-1 were incubated on mock or cct-5(RNAi) plates at 20°C for 3 d. Approximately 30–40 worms were incubated in Egg buffer (118 mM NaCl, 48 mM KCl, 2 mM CaCl2, 2 mM MgCl2, 25 mM HEPES-NaOH, pH 7.3) containing 1 mg/ml Texas Red–dextran (40,000 molecular weight; Molecular Probes) for 90 min at 20°C. Worms were washed and mounted on agarose pads with 20 mM levamisole in Egg buffer. Images were obtained by using the FV1000 confocal microscopy system.

Fluorescence recovery after photobleaching analysis

The wide-field images of intestinal cells were obtained by using the FV1000 confocal microscopy system, and then the fluorescence of the small areas containing cytoplasmic mC-ACT-5 aggregates were photobleached by repeated scanning with the 543-nm laser at full power. After photobleaching, the time-lapse images of the wide-fields were further obtained for 30 min at 5-min intervals. The total fluorescence intensities in the photobleached areas were measured by using FV10-ASW (Olympus) and expressed as the relative fluorescence to the prebleach intensities.

Supplementary Material

Supplemental Materials
supp_25_20_3095__index.html (961B, html)

Acknowledgments

We thank Yuji Kohara and Barth D. Grant for supplying reagents. We thank the Caenorhabditis Genetic Center, which is funded by National Institutes of Health Office of Research Infrastructure Programs (P40 OD010440), for providing some strains. We also thank the Developmental Studies Hybridoma Bank (University of Iowa, Iowa City, IA), created by the National Institute of Child Health and Human Development of the National Institutes of Health, for providing monoclonal anti–IFB-2 and anti–ERM-1 antibodies. We thank the members of the Sato laboratory for technical assistance and discussions. K.S. was supported by the Funding Program for Next Generation World-leading Researchers (NEXT Program), the Sumitomo Foundation, The Mochida Memorial Foundation, and the Naito Foundation. M.S. was supported by a Grant-in-Aid for Young Scientists (A), Japan Society for the Promotion of Science; the Naito Foundation; the Cell Science Research Foundation; and the Uehara Memorial Foundation. This work was supported by the Joint Research Program of the Institute for Molecular and Cellular Regulation at Gunma University.

Abbreviations used:

BSA

bovine serum al­bumin

CCT

chaperonin containing TCP-1

ERM

ezrin, radixin, moesin

FRAP

fluorescence recovery after photobleaching

GFP

green fluorescent protein

HEPES

4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid

IPTG

isopropyl β-d-thiogalactopyranoside

mC

mCherry

PBS

phosphate-buffered saline

RNAi

RNA interference

TRiC

TCP-1 ring complex

Footnotes

This article was published online ahead of print in MBoC in Press (http://www.molbiolcell.org/cgi/doi/10.1091/mbc.E13-09-0530) on August 20, 2014.

*These authors contributed equally to this work.

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