There are errors in Table 3. Please see the corrected Table 3 here.
Table 3. Adaptive mutations observed in the 5'UTR and P1 regions of EV71:TLLm and EV71:TLLmv viral genomes.
EV71:BS vs EV71:TLLm | EV71:BS vs EV71:TLLmv | ||||||
Amino acid changes | Amino acid changes | ||||||
Genome region | Nucleotide changes | Polyprotein1 | Mature protein2 | Genome region | Nucleotide changes | Polyprotein6 | Mature protein7 |
Cloverleaf | Cloverleaf | C 140 G | |||||
IRES 3 | A 141 G | IRES | A 141 C | ||||
G 195 C | T 209 C | ||||||
T 209 C | G 258 A | ||||||
G 258 A | C 370 T | ||||||
C 370 T | Not applicable | G 448 A | Not applicable | ||||
G 448 A | A 502 C | ||||||
T 502 C | G 675 T | ||||||
C 709 T | T 677 C | ||||||
A 671 T | C 687 T | ||||||
G 675 T | C 709 T | ||||||
T 678 INS4 | 678-681 INS | ||||||
726-745 DEL5 | |||||||
VP4 | A 809 G | E 21 G | E 21 G | VP4 | A 809 G | E 21 G | E 21 G |
VP2 | G 1359 A | V 204 I | V 135 I | VP2 | G 1359 A | V 204 I | V 135 I |
G 1385 C | S 213 T | S 144 T | G 1385 C | S 213 T | S 144 T | ||
A 1400 T | K 218 I | K 149 I | A 1400 T | K 218 I | K 149 I | ||
T 1428 C | E 228 P | E 159 P | |||||
G 1429 C | E 228 P | E 159 P | |||||
VP3 | G 1900 C | A 385 P | A 62 P | ||||
A 2287 G | T 514 A | T 191 A | |||||
A 2421 G | I 558 M | I 235 M | |||||
VP1 | T 2462 C | V 572 A | V 7 A | VP1 | T 2462 C | V 572 A | V 7 A |
C 2725 T | L 660 F | L 95 F | C 2530 A | Q 595 K | Q 30 K | ||
A 2734 G | K 663 E | K 98 E | A 2719 G | I 658 V | I 93 V | ||
A 2752 G | N 669 D | N 104 D | T 2724 A | D 659 E | D 94 E | ||
A 2876 C | E 710 A | E 145 A | C 2725 T | L 660 F | L 95 F | ||
A 2943 T | E 732 D | E 167 D | A 2734 G | K 663 E | K 98 E | ||
C 2947 T | L 734 F | L 169 F | A 2752 G | ||||
C 3165 T | S 806 L | S 241 L | A 2753 G | N 669 G | N 104 G | ||
A 2876 C | E 710 A | E 145 A | |||||
A 2943 T | E 732 D | E 167 D | |||||
C 2947 T | L 734 F | L 169 F | |||||
C 3165 T | S 806 L | S 241 L | |||||
T 3175 C | Y 810 H | Y 245 H | |||||
G 3184 A | V 813 I | V 248 I | |||||
G 3319 T | A 858 S | A 293 S | |||||
Numbering of amino acids in the uncleaved polyprotein prior to maturation.
Numbering of amino acids in the mature protein.
IRES - Internal Ribosome Entry Site.
INS – Insertion.
DEL – Deletion.
There are errors in Table 4. Please see the corrected Table 4 here.
Table 4. Adaptive mutations observed in the P2 and P3 regions of EV71:TLLm and EV71:TLLmv viral genomes.
EV71:BS vs EV71:TLLm6 | EV71:BS vs EV71:TLLmv11 | ||||||
Amino acid changes | Amino acid changes | ||||||
Genome region | Nucleotide changes | Polyprotein7 | Mature protein 8 | Genome region | Nucleotide changes | Polyprotein | Mature protein |
2A | G 3722 A | G 992 E | G 130 E | 2A | G 3722 A | G 992 E | G 130 E |
2C | A 4366 G | T 1207 A | T 96 A | 2C | A 4366 G | T 1207 A | T 96 A |
3A | C 5117 T | A 1457 V | A 17 V | ||||
3B | T 5357 C | L 1537 P | L 11 P | 3B | T 5357 C | L 1537 P | L 11 P |
3C | A 5557 G | I 1604 V | I 56 V | 3C | A 5557 G | I 1604 V | I 56 V |
A 5569 G | I 1608 V | I 60 V | A 5569 G | I 1608 V | I 60 V | ||
3D | A 6211 G | N 1822 D | N 91 D | 3D | A 6070 T | T 1775 S | T 44 S9 |
T 6835 A | S 2030 T | S 299 T4 | T 6137 C | V 1797 A | V 66 A3 | ||
A 7128 T | R 2127 S | R 396 S5 | A 6211 G | N 1822 D | N 91 D | ||
T 7247 C | V 2167 A | V 436 A5 | C 6404 G | S 1886 C | S 155 C | ||
T 6592 G | W 1949 G | W 218 G10 | |||||
T 6835 A | S 2030 T | S 299 T4 | |||||
A 7128 T | R 2127 S | R 396 S11 | |||||
T 7247 C | V 2167 A | V 436 A5 |
Mutations are based on alignment with the reference EV71:BS genome.
Numbering of amino acids in the uncleaved polyprotein prior to maturation.
Numbering of amino acids in the mature protein.
Mutation located in the Ring finger domain of the RNA-dependent RNA Polymerase.
Mutation located in the Palm domain of the RNA-dependent RNA Polymerase.
Mutation located in the Thumb domain of the RNA-dependent RNA Polymerase.
Reference
- 1. Victorio CBL, Xu Y, Ng Q, Chow VTK, Chua KB (2014) Phenotypic and Genotypic Characteristics of Novel Mouse Cell Line (NIH/3T3)-Adapted Human Enterovirus 71 Strains (EV71:TLLm and EV71:TLLmv). PLoS ONE 9(3): e92719 doi:10.1371/journal.pone.0092719 [DOI] [PMC free article] [PubMed] [Google Scholar]