Skip to main content
Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1995 Apr 11;92(8):3483–3487. doi: 10.1073/pnas.92.8.3483

Two auxin-responsive domains interact positively to induce expression of the early indoleacetic acid-inducible gene PS-IAA4/5.

N Ballas 1, L M Wong 1, M Ke 1, A Theologis 1
PMCID: PMC42191  PMID: 7724586

Abstract

The plant growth hormone indole-3-acetic acid (IAA) transcriptionally activates expression of several genes in plants. We have previously identified a 164-bp promoter region (-318 to -154) in the PS-IAA4/5 gene that confers IAA inducibility. Linker-scanning mutagenesis across the region has identified two positive domains: domain A (48 bp; -203 to -156) and domain B (44 bp; -299 to -256), responsible for transcriptional activation of PS-IAA4/5 by IAA. Domain A contains the highly conserved sequence 5'-TGTCCCAT-3' found among various IAA-inducible genes and behaves as the major auxin-responsive element. Domain B functions as an enhancer element which may also contain a less efficient auxin-responsive element. The two domains act cooperatively to stimulate transcription; however, tetramerization of domain A or B compensates for the loss of A or B function. The two domains can also mediate IAA-induced transcription from the heterologous cauliflower mosaic virus 35S promoter (-73 to +1). In vivo competition experiments with icosamers of domain A or B show that the domains interact specifically and with different affinities to low abundance, positive transcription factor(s). A model for transcriptional activation of PS-IAA4/5 by IAA is discussed.

Full text

PDF
3483

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Abel S., Oeller P. W., Theologis A. Early auxin-induced genes encode short-lived nuclear proteins. Proc Natl Acad Sci U S A. 1994 Jan 4;91(1):326–330. doi: 10.1073/pnas.91.1.326. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Ainley W. M., Walker J. C., Nagao R. T., Key J. L. Sequence and characterization of two auxin-regulated genes from soybean. J Biol Chem. 1988 Aug 5;263(22):10658–10666. [PubMed] [Google Scholar]
  3. Ballas N., Wong L. M., Theologis A. Identification of the auxin-responsive element, AuxRE, in the primary indoleacetic acid-inducible gene, PS-IAA4/5, of pea (Pisum sativum). J Mol Biol. 1993 Oct 20;233(4):580–596. doi: 10.1006/jmbi.1993.1537. [DOI] [PubMed] [Google Scholar]
  4. Bazett-Jones D. P., Leblanc B., Herfort M., Moss T. Short-range DNA looping by the Xenopus HMG-box transcription factor, xUBF. Science. 1994 May 20;264(5162):1134–1137. doi: 10.1126/science.8178172. [DOI] [PubMed] [Google Scholar]
  5. Conner T. W., Goekjian V. H., LaFayette P. R., Key J. L. Structure and expression of two auxin-inducible genes from Arabidopsis. Plant Mol Biol. 1990 Oct;15(4):623–632. doi: 10.1007/BF00017836. [DOI] [PubMed] [Google Scholar]
  6. Dynan W. S. Modularity in promoters and enhancers. Cell. 1989 Jul 14;58(1):1–4. doi: 10.1016/0092-8674(89)90393-0. [DOI] [PubMed] [Google Scholar]
  7. Estelle M. The plant hormone auxin: insight in sight. Bioessays. 1992 Jul;14(7):439–444. doi: 10.1002/bies.950140703. [DOI] [PubMed] [Google Scholar]
  8. Evans M. L., Ray P. M. Timing of the auxin response in coleoptiles and its implications regarding auxin action. J Gen Physiol. 1969 Jan;53(1):1–20. doi: 10.1085/jgp.53.1.1. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Franck A., Guilley H., Jonard G., Richards K., Hirth L. Nucleotide sequence of cauliflower mosaic virus DNA. Cell. 1980 Aug;21(1):285–294. doi: 10.1016/0092-8674(80)90136-1. [DOI] [PubMed] [Google Scholar]
  10. Hagen G., Guilfoyle T. J. Rapid induction of selective transcription by auxins. Mol Cell Biol. 1985 Jun;5(6):1197–1203. doi: 10.1128/mcb.5.6.1197. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Herschbach B. M., Johnson A. D. Transcriptional repression in eukaryotes. Annu Rev Cell Biol. 1993;9:479–509. doi: 10.1146/annurev.cb.09.110193.002403. [DOI] [PubMed] [Google Scholar]
  12. Kunkel T. A. Rapid and efficient site-specific mutagenesis without phenotypic selection. Proc Natl Acad Sci U S A. 1985 Jan;82(2):488–492. doi: 10.1073/pnas.82.2.488. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Lucas P. C., Granner D. K. Hormone response domains in gene transcription. Annu Rev Biochem. 1992;61:1131–1173. doi: 10.1146/annurev.bi.61.070192.005411. [DOI] [PubMed] [Google Scholar]
  14. Marriott S. J., Brady J. N. Enhancer function in viral and cellular gene regulation. Biochim Biophys Acta. 1989 Dec 17;989(2):97–110. doi: 10.1016/0304-419x(89)90037-1. [DOI] [PubMed] [Google Scholar]
  15. McKnight S. L., Kingsbury R. Transcriptional control signals of a eukaryotic protein-coding gene. Science. 1982 Jul 23;217(4557):316–324. doi: 10.1126/science.6283634. [DOI] [PubMed] [Google Scholar]
  16. Montminy M. R., Sevarino K. A., Wagner J. A., Mandel G., Goodman R. H. Identification of a cyclic-AMP-responsive element within the rat somatostatin gene. Proc Natl Acad Sci U S A. 1986 Sep;83(18):6682–6686. doi: 10.1073/pnas.83.18.6682. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Oeller P. W., Keller J. A., Parks J. E., Silbert J. E., Theologis A. Structural characterization of the early indoleacetic acid-inducible genes, PS-IAA4/5 and PS-IAA6, of pea (Pisum sativum L.). J Mol Biol. 1993 Oct 20;233(4):789–798. doi: 10.1006/jmbi.1993.1555. [DOI] [PubMed] [Google Scholar]
  18. Ptashne M. How eukaryotic transcriptional activators work. Nature. 1988 Oct 20;335(6192):683–689. doi: 10.1038/335683a0. [DOI] [PubMed] [Google Scholar]
  19. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Schöler H. R., Gruss P. Specific interaction between enhancer-containing molecules and cellular components. Cell. 1984 Feb;36(2):403–411. doi: 10.1016/0092-8674(84)90233-2. [DOI] [PubMed] [Google Scholar]
  21. Theologis A., Huynh T. V., Davis R. W. Rapid induction of specific mRNAs by auxin in pea epicotyl tissue. J Mol Biol. 1985 May 5;183(1):53–68. doi: 10.1016/0022-2836(85)90280-3. [DOI] [PubMed] [Google Scholar]
  22. Tsai S. Y., Tsai M. J., O'Malley B. W. Cooperative binding of steroid hormone receptors contributes to transcriptional synergism at target enhancer elements. Cell. 1989 May 5;57(3):443–448. doi: 10.1016/0092-8674(89)90919-7. [DOI] [PubMed] [Google Scholar]
  23. Xiao H., Lis J. T. A consensus sequence polymer inhibits in vivo expression of heat shock genes. Mol Cell Biol. 1986 Sep;6(9):3200–3206. doi: 10.1128/mcb.6.9.3200. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Zarembinski T. I., Theologis A. Anaerobiosis and plant growth hormones induce two genes encoding 1-aminocyclopropane-1-carboxylate synthase in rice (Oryza sativa L.). Mol Biol Cell. 1993 Apr;4(4):363–373. doi: 10.1091/mbc.4.4.363. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Zoller M. J., Smith M. Oligonucleotide-directed mutagenesis: a simple method using two oligonucleotide primers and a single-stranded DNA template. Methods Enzymol. 1987;154:329–350. doi: 10.1016/0076-6879(87)54083-6. [DOI] [PubMed] [Google Scholar]
  26. van der Zaal E. J., Droog F. N., Boot C. J., Hensgens L. A., Hoge J. H., Schilperoort R. A., Libbenga K. R. Promoters of auxin-induced genes from tobacco can lead to auxin-inducible and root tip-specific expression. Plant Mol Biol. 1991 Jun;16(6):983–998. doi: 10.1007/BF00016071. [DOI] [PubMed] [Google Scholar]

Articles from Proceedings of the National Academy of Sciences of the United States of America are provided here courtesy of National Academy of Sciences

RESOURCES