Table 1.
Resolution | Corr | MDS1 |
MDS2 |
NMDS |
PM1 |
PM2 |
|||||
---|---|---|---|---|---|---|---|---|---|---|---|
Corr | RMSD | Corr | RMSD | Corr | RMSD | Corr | RMSD | Corr | RMSD | ||
1 Mb | 0.981 | 13.13 | 0.945 | 5.54 | 0.964 | 5.80 | 0.965 | 7.28 | 0.931 | 4.92 | 0.976 |
500 kb | 0.959 | 10.00 | 0.942 | 5.68 | 0.959 | 5.67 | 0.959 | 7.14 | 0.913 | 4.66 | 0.968 |
200 kb | 0.845 | 5.64 | 0.940 | 3.74 | 0.945 | 3.73 | 0.946 | 4.01 | 0.891 | 3.42 | 0.958 |
100 kb | 0.605 | 5.07 | 0.736 | 2.53 | 0.676 | 2.52 | 0.666 | 2.51 | 0.664 | 2.76 | 0.771 |
Note: For each resolution, the table lists the Spearman correlation the two enzyme replicate datasets, and, for each inference method, the average RMSD and Spearman correlation between pairs of structures inferred from the two datasets. Boldface values correspond to the best RMSD or correlation values among all five methods. In general, higher resolution leads to a lower correlation between pairs of inferred structures.