Abstract
The etiology of the autoimmune liver disease primary biliary cirrhosis (PBC) remains largely unresolved, owing in large part to the complexity of interaction between environmental and genetic contributors underlying disease development. Observations of disease clustering, differences in geographical prevalence, and seasonality of diagnosis rates suggest the environmental component to PBC is strong, and epidemiological studies have consistently found cigarette smoking and history of urinary tract infection to be associated with PBC. Current evidence implicates molecular mimicry as a primary mechanism driving loss of tolerance and subsequent autoimmunity in PBC, yet other environmentally influenced disease processes are likely to be involved in pathogenesis. In this review, the authors provide an overview of current findings and touch on potential mechanisms behind the environmental component of PBC.
Keywords: autoimmunity, environment, primary biliary cirrhosis
Primary biliary cirrhosis (PBC) is an autoimmune liver disease characterized by chronic inflammation and targeted destruction of biliary epithelial cells lining the small- to medium-sized interlobular bile ducts.1 As with most other autoimmune diseases, development of PBC is thought to entail the action of environmental stressors in genetically susceptible individuals.2 However, the etiology of this disease remains enigmatic despite much recent effort, reflecting the true complexity underlying autoimmunity and the difficulties inherent to understanding and testing how environmental factors interact with the genetic background to result in disease.
Robust genetic associations with specific human leukocyte antigen (HLA) alleles, a marked female predominance, and the near ubiquity of antimitochondrial antibodies (AMAs) specific for the E2 subunit of the pyruvate dehydrogenase complex (PDC-E2) in PBC patients indicate that PBC is a prototypical autoimmune disease.3 Evidence for the role of genetic factors is provided by high disease concordance in monozygotic (MZ) twins,4 increased sibling risk of AMA positivity5 and PBC development,6 and overlap with other autoimmunity.7 Additionally, recent genome-wide association studies (GWASs) and follow-up fine mapping efforts8–14 have identified some 30 independent association signals primarily implicating genes with known immunological function and involving IL12, Jak-Stat, and NF-κB signaling pathways. As a rule, these associations have demonstrated relatively low penetrance and many of the PBC-associated loci overlap with signals obtained for other autoimmune diseases, suggesting that common genetically encoded differences in immune function contribute to the spectrum of autoimmunity. However, the factors responsible for the development of organ-specific disease such as in PBC remain elusive.
Although genetic factors play an important role in the development of complex autoimmune disease, it is becoming apparent that environmental exposures are equally important. Environmental factors likely affecting PBC include chemical toxins, xenobiotics, and infectious agents that ultimately drive loss of tolerance to mitochondrial antigens through a variety of mechanisms in genetically susceptible individuals. Furthermore, exposure to these agents may be variable/modifiable or ubiquitous/unavoidable. In PBC, evidence for the importance of environmental factors to disease development is provided by low concordance in dizygotic (DZ) twins,4 differential geographical prevalence rates,4,15,16 seasonal differences in disease diagnosis,15,17 and occurrence of disease clustering.18,19 Several epidemiological studies performed over the past decade have identified family history, smoking, and history of urinary tract infection (UTI) as reproducible risk factors for PBC.20–28 In this review article, we will summarize current studies regarding environmental factors and their potential pathogenic mechanisms in PBC.
Geographical Location and Risk of Primary Biliary Cirrhosis
Prevalence of PBC is widely varied depending on geographical location, ranging from 1.91 to 40.2 per 100,000 inhabitants,29 with the highest rates reported in the United States30 and the United Kingdom (UK)31 and the lowest rates reported in Brunei Darussalam32 and Australia.33 Although differences in case-finding methods, disease awareness, and access to health care may have somewhat confounded these studies, the prevalence disparities do suggest that environmental and/or genetic factors affect PBC. The composition of environmental agents (e.g., sunlight, chemicals, toxins, bacteria, viruses) present at specific geographical locations may influence development of autoimmunity. For instance, increasing latitude has been associated with risk of the auto-immune disease multiple sclerosis,34 likely facilitated by decreased sunlight exposure and the immunoregulatory effects of ultraviolet radiation and vitamin D. Although this phenomenon could be at play in PBC pathogenesis, much more data would be required to convincingly show an effect as regional variability in HLA allele frequencies as well as dietary differences between populations could mask such an association.
Some of the earliest studies focusing on well-defined populations and suggesting a link between environmental factors and PBC came from the United Kingdom (UK) in the early and mid-1980s. In a study that noted high PBC prevalence in the heavily industrialized city of Sheffield in northern England, PBC was found to cluster within certain districts of the city; after considering many factors, a specific water reservoir was identified as the most likely source of a disease trigger.35 Ensuing analyses found the implicated reservoir to have especially soft water and a lower concentration of fluoride compared with the other water sources, although it remains unclear whether these differences would explain the disease cluster. In a subsequent study focused on the area surrounding the city of Newcastle-upon-Tyne, a large industrialized urban center in northeast England, a difference in disease prevalence was found between rural (3.7/100,000) and urban (14.4/100,000) populations.15 At the time, this finding was attributed as a likely difference in diagnosis rates as asymptomatic presentation was lower in areas outside of the primary urban center. However, this finding is also consistent with the contemporary view of a hygiene hypothesis affecting development of autoimmunity, which is some-what supported by a follow-up study in the region that again found risk of PBC to be higher in urban than in rural regions studied.16 It is important to note that neither of these studies directly report on the nature of daily activities and potential antigen exposures in the rural areas, so interpretation as evidence in support of a hygiene effect should be done with caution.
Although the UK studies suggest PBC rates and risks to be increased in more heavily industrialized areas, they do not explicitly implicate exposure to environmental pollutants/toxins as risk factors for PBC development. To directly address the question of whether environmental toxins affect PBC risk, a study was performed to examine the prevalence and potential clustering of PBC cases near Superfund toxic waste sites (SFSs) in New York City.19 These sites are heavily polluted with numerous chemical agents, including aromatic and halogenated hydrocarbons; residential proximity to these sites has been associated with immune dysfunction36 and thyroid disease.37 This study utilized cases from a comprehensive liver transplantation registry to avoid potential referral bias as well as a cohort of untransplanted patients followed at Mount Sinai School of Medicine (New York, NY) in their analysis and identified significant clustering of both groups near SFSs that were open-air dump sites.19 Although this study was unable to identify specific toxins influencing PBC risk, the authors speculated that exposure to volatile organic compounds (VOCs) such as benzene released from the site may contribute, especially considering the association of cigarette smoking (which contains numerous VOCs including benzene) with PBC and findings that halogenated forms of benzene can mimic the lipoylated autoantigen epitope found in PBC.38
To test whether the environmental contributors to PBC development are static components of the environment or more transient in nature, the group from northeast England performed space-time clustering analysis on a cohort of 1,015 PBC cases diagnosed over 15 years and found statistical evidence for the phenomenon across the sample, with particularly strong clustering of patients diagnosed within 0.3 years of each other.39 To follow up, the same group assessed seasonal variability of disease diagnosis in the cohort and found significant evidence for a sinusoidal presentation pattern with peak diagnosis occurring in June.17 These findings are important in that they suggest some environmental factors contributing to PBC are transient in nature and that disease latency prior to diagnosis might be relatively constant or the seasonal disease triggers may be quite strong. However, many potential environmental triggers for PBC exhibit seasonality, such as sunlight, infectious agents, pollution, exercise habits, and diet, thus limiting the interpretation of the findings.
Smoking and Risk of Primary Biliary Cirrhosis
The serious negative impacts of cigarette smoking on human health are well established. The first evidence that smoking might influence PBC development came from a questionnaire-based study of cases and controls from northeast England, in which 76% of PBC patients and 57% of controls indicated a history of smoking.23 Subsequent studies of PBC in the UK and United States have universally replicated the association of smoking history (ever/never) with PBC development.22,24,27,28 A study from France found PBC to be associated with higher levels of exposure to cigarette smoke despite the case and control groups reporting similar rates of ever smoking.21 However, recent studies from Greece26 and the Netherlands20 did not identify any PBC association with smoking, although definitions and ascertainment did significantly differ from the other studies and overall rate of smoking in those populations was somewhat lower. An overview of the primary smoking data from these studies is provided in Table 1. In addition to an effect on PBC risk, smoking has been shown to impact severity of fibrosis in several chronic liver diseases40,41 including PBC.42,43 Specifically, smoking history and level of consumption were found to be significantly associated with advanced histological disease stage at presentation in two separate studies.42,43 Although there remains a paucity of data on how smoking effects disease progression postdiagnosis and in the context of treatment with UDCA, PBC patients should be encouraged to quit smoking.
Table 1.
Smoking data from major epidemiological studies
| Subjects (% smokers) | Significance? | |||||
|---|---|---|---|---|---|---|
| Study | Year | Country | PBC | Controls | Ever smoke?a | Exposure levelb |
| Howel et al23 | 2000 | UK | 100 (76%) | 223 (57%) | OR 2.4 | NA |
| Parikh-Patel et al27 | 2001 | US | 201 (66%) | 141 (49%) | p = 0.005 | NA |
| Gershwin et al22 | 2005 | US | 1032 (60%) | 1041 (54%) | p = 0.0034 | Sig. lower |
| Prince28 | 2010 | UK | 318 (NP) | 2438 (NP) | OR 1.63 | NA |
| 2258 (NP) | OR 1.57 | |||||
| Corpechot et al21 | 2010 | France | 222 (41%) | 509 (42%) | NS | Sig. higher |
| Mantaka et al26 | 2012 | Greece | 111 (33%) | 149 (37%) | NS | NA |
| Lammert et al24 | 2013 | US | 522 (53%) | 616 (40%) | p < 0.001 | Sig. higher |
| Boonstra et al29 | 2014 | Netherlands | 464 (20%) | 128 (17%) | NS | NA |
Abbreviations: NA: not assessed; NP, not provided; NS, not significant; PBC, primary biliary cirrhosis; UK, United Kingdom; US, United States.
Results provided as odds ratio (OR) or p values (P) as originally reported for the question “Ever smoke?”; definitions sometimes differed between studies.
Results reported for “level of exposure to smoking”; definitions varied between studies.
Cigarette smoke contains thousands of components including nicotine, reactive oxidant substances (ROS), and polycyclic aromatic hydrocarbons, a great number of which are known mutagenic, carcinogenic, cytotoxic, or antigenic agents.44–47 The immunomodulatory effects of cigarette smoke are diverse and have been shown to include increases in pro-inflammatory cytokines interleukin- (IL-) 1, IL-6, IL-8, and tumor necrosis factor-(TNF-) α.48,49 The chronic inflammation and widescale cellular damage resulting from cigarette smoking can lead to a pathogenic adaptive Th1 immune response to various cellular antigens and disrupted regulatory T cell homeostasis.50,51 This is consistent with PBC, in which Th1 cells are the primary infiltrating lymphocytes and the regulatory function of the T cell compartment is diminished.52–54 However, the proinflammatory effect of smoking is not always stimulating, as cigarette exposure has been shown to suppress the activation of dendritic cells, which demonstrated decreased secretion of Th1 polarizing IL-12 and Th17 polarizing IL-23 in response to lipopolysaccharide (LPS) stimulation in vitro and ex vivo.55 This finding may in part explain the increased susceptibility of smokers to several infectious agents, and also provide a mechanistic link (i.e., immuno insufficiency) between increased PBC risk attributed to smoking and UTI. In addition to the proinflammatory and immunosuppressive effects of cigarette smoking, halogenated forms of benzene found in cigarette smoke can mimic the lipoylated autoantigen epitope found in PBC.38
Urinary Tract Infection and Risk of Primary Biliary Cirrhosis
The potential role of UTI in PBC was first reported in the mid-1980s in a study which noted that more PBC patients (19%) had evidence of significant bacteriuria compared with patients with other chronic liver disease (7%) and rheumatoid arthritis (8%).56 Subsequent prospective analysis of 144 consecutive PBC patients found that 35% developed UTI during follow-up, more than half of these infections were asymptomatic, and more than half of the bacteriuric patients had more than one infectious episode.56 Follow-up studies were not able to identify additional factors explaining the increased prevalence of UTI among PBC patients57 and antimicrobial treatment did not alter the natural history of infection in PBC patients.58 As well, a second study of 160 consecutive PBC patients did not replicate the original association.59 Questionnaire-based assessment in the major case-control studies of PBC also support a role for UTI in disease pathogenesis, with the majority finding that PBC patients significantly more often reported “ever having” UTI than controls (Table 2).21–23,27,28 In a recent U.S. study by Lammert et al, the reporting of ever having UTI did not significantly differ between case and control groups.24 However, this study did find that PBC patients report having more “multiple UTIs” (defined as > one episode per year) than controls,24 consistent with findings from the French study by Corpechot, which also reported more “recurrent UTI” (defined as > five episodes over lifetime) in PBC patients,21 and the original observational study.56 Subsequent inquiries have found that the increased risk of UTI occurs primarily prior to and not after development of PBC,56,60,61 suggesting these infections may play a causative role in disease development and are not solely a consequence of the existing autoimmunity.
Table 2.
UTI data from major epidemiological studies
| Subjects (% report UTI) | Significance? | |||||
|---|---|---|---|---|---|---|
| Study | Year | Country | PBC | Controls | Ever UTI?a | Recurrent or Multipleb |
| Howel et al23 | 2000 | UK | 95 (61%) | 214 (51%) | OR 1.7 | NA |
| Parikh-Patel et al27 | 2001 | US | 177 (70%) | 133 (48%) | p < 0.01 | NA |
| Gershwin et al22 | 2005 | US | 1032 (59%) | 1041 (52%) | p = 0.0003 | NA |
| Prince et al28 | 2010 | UK | 318 (NP) | 2438 (NP) | OR 2.4 | NA |
| 2258 (NP) | OR 1.7 | |||||
| Corpechot et al21 | 2010 | France | 218 (48%) | 509 (31%) | p < 0.0001 | p < 0.0001 |
| Mantaka et al26 | 2012 | Greece | NP | NP | NS | NS |
| Lammert et al24 | 2013 | US | 522 (39%) | 616 (37%) | NS | p < 0.001 |
| Boonstra et al29 | 2014 | Netherlands | NA | NA | NA | NA |
Abbreviations: NA: not assessed; NP, not provided; NS, not significant; PBC, primary biliary cirrhosis; UK, United Kingdom; US, United States; UTI, urinary tract infection.
Results provided as odds ratio (OR) or p values (P) as originally reported for the question “Ever had a UTI?”; assessments likely to have varied between studies.
Results reported for “Recurrent or multiple UTI”; definitions varied between studies.
Escherichia coli (E. coli) is the predominant pathogen isolated from women with a UTI,62 and was recently shown to be a strong inducer of PDC-E2 specific AMA and liver pathology consistent with PBC in the NOD.B6 Idd10.Idd18 mouse model,63 indicating that infection with E. coli may indeed trigger PBC in a genetically susceptible host. In addition to E. coli, infection with the environmentally ubiquitous xenobiotic metabolizing bacteria Novosphingobium aromaticivorans (N. aro) has also been shown to induce AMA and PBC like disease in this same genetic model,63,64 providing evidence that infectious agents acting outside of UTI may also contribute to disease etiology. Indeed, several pathogens including Helicobacter pylori,65 Chlamydia pneumonia,66 Mycobacterium gordonae,67 and Epstein-Barr virus (EBV)68,69 have demonstrated association with PBC in observational studies, although such findings have not been robustly reproducible.70–72 In a more recent study, PBC was associated with seropositivity for four common pathogens (Toxoplasmosis gondii, Helicobacter pylori, Cytomegalovirus, and EBV) and there was a high frequency of infection co-occurrence among PBC patients suggesting a role for infection burden (i.e., multiple infections) in PBC development.73
Molecular Mimicry and Environmental Risk for Primary Biliary Cirrhosis
The loss of self-tolerance to PDC-E2 (and other 2-oxo-acid dehydrogenase complexes) is considered the initiating event leading to development of autoimmunity and subsequent biliary injury in PBC.74 To break tolerance, weakly autoreactive B and/or T cells can be primed against cross-reactive epitope “mimics” under circumstances in which activation and proliferation rather than anergy is induced. This mechanism, termed molecular mimicry,75 originally invoked viruses or bacteria as the mimic, but in concept has grown to include immunogenic alterations to self-proteins by environmental xenobiotics or other chemical toxins.76 There is mounting evidence to suggest that molecular mimicry plays a key etiological role in PBC by facilitating loss of tolerance to PDC-E2 epitopes and development of AMA. For instance, several mimicry peptides and proteins from bacteria commonly associated with PBC including E. coli, N. aro, and Lactobacillus delbrueckii have been shown to strongly cross-react with PDC-E2 AMA and activate T-cell clones from PBC patients,77–82 signifying that PBC could have arisen due to exposure to these antigens.
In addition to bacterial mimics, current evidence suggests that xenobiotics may play a crucial role in PBC pathogenesis, primarily through modification of the immunodominant inner lipoyl domain of PDC-E2.83 Early studies demonstrated that patient sera reacted strongly against halogenated organic compound modified autoepitopes84 and that immunization with such chemicals could elicit generation of AMA in an animal model.85 Further investigation identified numerous xenobiotics with strong IgG reactivity against PBC sera, several of which were found to be more reactive than the native lipolylated PDC-E2 peptide and crossreactive with lipoic acid.38 Among these compounds is 2-octynoic acid, a commonly used artificial flavoring and scent, which was subsequently shown to induce AMA and PBC-like disease in murine models.86,87 This finding is compelling in light of suggestive associations of PBC with frequent use of certain beauty products such as nail polish22 and hair dye,28 although such epidemiological findings have been disputed.21 More recent work extending from the 2-octynoic acid findings suggest that a broad class of electrophilic drugs including acetaminophen and other commonly used nonsteroidal antiinflammatory drugs (NSAIDs) may contribute to the xenobiotic-induced mimicry and loss of tolerance to PDC-E2 seen in PBC.88,89 Of interest, transient AMA production has been reported in subsets of acute liver failure (ALF) patients, including those with acetaminophen toxicity,90,91 suggesting that severe oxidative damage of the liver can elicit development of AMA without conversion to frank autoimmunity. However, the nature of the genetic background (1) permissive for AMA development and (2) sensitive to subsequent autoimmunity remains obscure.
Antibiotics and Antigens: The Hygiene Hypothesis and Primary Biliary Cirrhosis
The Industrial Revolution and ensuing move toward mass production and increased specialization among the labor force fundamentally changed the structure of modern society, accelerating the growth and increasing the density of large urban centers. Subsequent development of modern approaches to public health including timely sanitation service, robust water treatment, and widespread use of vaccines and antibiotics have been greatly beneficial, supporting vast population growth, decreasing infant mortality, and increasing life expectancy in industrialized nations nearly fourfold in the past 150 years. However, as a trade-off, the diversity of foreign antigens to which we are exposed has drastically decreased, which may in part explain the recent epidemic of chronic inflammatory disorders such as allergy and autoimmunity by mechanisms proposed in the “hygiene” or more aptly the “old friends” hypothesis.92,93 This hypothesis posits that coevolution with microorganisms has shaped our immune system over thousands of years; as a result, exposure to a wide variety of pathogenic, environmentally ubiquitous but innocuous, and commensal organisms plays a key role in development and maintenance of the immunoregulatory program.94 Numerous diverse mechanisms underlying this hypothesis have been proposed as detailed in recent reviews,95,96 many of which are outside the scope of this article. However, loss of antigenic diversity as a mechanism facilitating autoimmunity driven by molecular mimicry and direct suppression of inflammation by helminth infection may be relevant to PBC and are discussed below.
Crossreactivity between the positively selected “weak-self” T-cell repertoire emerging from the thymus and the myriads of foreign antigens encountered throughout life forms the basis for discrimination of self from non-self and facilitates the ability to effectively clear pathogens while avoiding untoward immunity against beneficial commensal organisms and other sources of innocuous environmental antigens to which we are chronically exposed.97,98 This is accomplished by development and maintenance of homeostatic niches of effector and regulatory T-cell subsets with varied activation potentials in response to the quantity and quality of the priming antigenic exposures.99,100 As such, effective and specific immunity requires a highly diverse “exposome” (i.e., set of antigenic and chemical exposures),101,102 which has been significantly reduced in modern industrialized society. This loss of antigenic diversity could contribute to PBC by reducing the pool of induced regulatory T-cells weakly crossreactive with PDC-E2 self-epitopes that would normally provide the basis for peripheral control of autoimmunity, thus increasing the likelihood of autoimmune conversion as the result of molecular mimicry. As well, lower antigenic diversity could lead to ineffective immune responses leading to repeated exposure to potentially PDC-E2 mimicking pathogens (as encountered in UTI), an effect that may be even more pronounced in individuals harboring particular genetic variation contributing to diminished T-cell function.
In addition to diminished overall diversity in antigenic exposures as a potential mechanism underlying the hygiene hypothesis, individual components of the exposome that have been essentially eradicated in industrialized society are beginning to be implicated as major components of immunoregulation. Particularly among these are the helminths, a highly diverse group of multicellular metazoan parasites that have coevolved with mammals for millennia. Infection with helminths induces polarization toward a Th2 immune response, which is thought to be the evolutionary solution to engaging these macropathogens through limiting collateral damage to host tissue by classical Th1 inflammatory mediators and invoking repair mechanisms to simultaneously mend tissues and encapsulate the pathogens.103 To avoid the immune response, helminths have evolved to directly modulate the immune system through induction of immunosuppressive programs resulting in stimulation of regulatory T-cells104 and IL-10 secreting B-cells,105 in effect modifying the Th2 response toward one that is generally more tolerogenic. Thus, the delicate balance between tolerance necessary to avoid unintentional damage to self and effective immunity to clear or mitigate the effects of pathogens was in part tuned by the endemic presence of helminth infection (extensively reviewed in106). As such, near eradication of helminths in modern industrialized society may have left individuals prone to development of allergy or autoimmunity, depending on the extent of underlying genetic adaption. Evidence that this phenomenon might contribute to PBC was reported by a group from Japan, who evaluated 4,117 patients, including 105 with autoimmune liver disease (ALD), from three hospitals in Okinawa for infection with Strongyloides stercoralis, a common human parasitic helminth endemic to the region.107 Of interest, only 1% of the ALD group was found to be infected with S. stercoralis compared with 7% of controls (p = 0.0063). However, a significant cohort effect was described, suggestive of potential variation in exposure between men and women and incremental improvements in local hygiene. This prompted a subset analysis focused on women born prior to 1955, which found that of 60 PBC patients none were infected compared with 72 of 1,225 (5.9%) controls (p = 0.045), suggesting that S. stercoralis infection may indeed be protective against PBC.107 Unfortunately, this study will be difficult, if not impossible, to replicate considering the rarity of helminth infection in current populations amenable to evaluation.
Concluding Remarks
The etiology of PBC is complex, driven by environmental exposure in the context of genetic background permissible for development of autoimmunity. Variation in geographical prevalence, presence of disease clustering, and seasonal differences in disease diagnosis provide evidence suggesting the role of environmental factors in PBC development may be important. However, despite several epidemiological studies, few potential disease triggers have been identified, with only cigarette smoking and UTI consistently found to be associated with disease. These associations and other suspected agents such as xenobiotics and microbes appear to influence PBC by facilitating molecular mimicry, leading to loss of tolerance to PDC-E2 and subsequent development of autoimmunity. However, other pathogenic mechanisms falling under the broad “hygiene hypothesis” may be involved and remain largely untested. The emerging availability of genome-wide datasets coupled with extensive questionnaire-based assessments of environmental exposure and access to comprehensive medical records of hundreds to thousands of PBC patients will allow us to begin interrogating the putative interaction between genes and environment contributing to PBC, incrementally improving our understanding of the underlying disease mechanisms and moving toward the ultimate goal of improved prognostication and therapy.
Acknowledgments
This work was supported by grants to Dr. Konstantinos N. Lazaridis from the National Institutes of Health (RO1 DK80670) and the A.J. and Sigismunda Palumbo Charitable Trust.
References
- 1.Kaplan MM, Gershwin ME. Primary biliary cirrhosis. N Engl J Med. 2005;353(12):1261–1273. doi: 10.1056/NEJMra043898. [DOI] [PubMed] [Google Scholar]
- 2.Hirschfield GM, Chapman RW, Karlsen TH, Lammert F, Lazaridis KN, Mason AL. The genetics of complex cholestatic disorders. Gastroenterology. 2013;144(7):1357–1374. doi: 10.1053/j.gastro.2013.03.053. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 3.Hirschfield GM, Gershwin ME. The immunobiology and pathophysiology of primary biliary cirrhosis. Annu Rev Pathol. 2013;8:303–330. doi: 10.1146/annurev-pathol-020712-164014. [DOI] [PubMed] [Google Scholar]
- 4.Selmi C, Mayo MJ, Bach N, et al. Primary biliary cirrhosis in monozygotic and dizygotic twins: genetics, epigenetics, and environment. Gastroenterology. 2004;127(2):485–492. doi: 10.1053/j.gastro.2004.05.005. [DOI] [PubMed] [Google Scholar]
- 5.Lazaridis KN, Juran BD, Boe GM, et al. Increased prevalence of antimitochondrial antibodies in first-degree relatives of patients with primary biliary cirrhosis. Hepatology. 2007;46(3):785–792. doi: 10.1002/hep.21749. [DOI] [PubMed] [Google Scholar]
- 6.Jones DE, Watt FE, Metcalf JV, Bassendine MF, James OF. Familial primary biliary cirrhosis reassessed: a geographically-based population study. J Hepatol. 1999;30(3):402–407. doi: 10.1016/s0168-8278(99)80097-x. [DOI] [PubMed] [Google Scholar]
- 7.Selmi C, Meroni PL, Gershwin ME. Primary biliary cirrhosis and Sjögren’s syndrome: autoimmune epithelitis. J Autoimmun. 2012;39(1-2):34–42. doi: 10.1016/j.jaut.2011.11.005. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 8.Hirschfield GM, Liu X, Han Y, et al. Variants at IRF5-TNPO3, 17q12-21 and MMEL1 are associated with primary biliary cirrhosis. Nat Genet. 2010;42(8):655–657. doi: 10.1038/ng.631. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9.Hirschfield GM, Liu X, Xu C, et al. Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants. N Engl J Med. 2009;360(24):2544–2555. doi: 10.1056/NEJMoa0810440. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10.Juran BD, Hirschfield GM, Invernizzi P, et al. Italian PBC Genetics Study Group. Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants. Hum Mol Genet. 2012;21(23):5209–5221. doi: 10.1093/hmg/dds359. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 11.Liu JZ, Almarri MA, Gaffney DJ, et al. UK Primary Biliary Cirrhosis (PBC) Consortium; Wellcome Trust Case Control Consortium 3. Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis. Nat Genet. 2012;44(10):1137–1141. doi: 10.1038/ng.2395. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 12.Liu X, Invernizzi P, Lu Y, et al. Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis. Nat Genet. 2010;42(8):658–660. doi: 10.1038/ng.627. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 13.Mells GF, Floyd JA, Morley KI, et al. UK PBC Consortium; Wellcome Trust Case Control Consortium 3. Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis. Nat Genet. 2011;43(11):1164. doi: 10.1038/ng.789. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14.Nakamura M, Nishida N, Kawashima M, et al. Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population. Am J Hum Genet. 2012;91(4):721–728. doi: 10.1016/j.ajhg.2012.08.010. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 15.Hamlyn AN, Macklon AF, James O. Primary biliary cirrhosis: geographical clustering and symptomatic onset seasonality. Gut. 1983;24(10):940–945. doi: 10.1136/gut.24.10.940. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Prince MI, Chetwynd A, Diggle P, Jarner M, Metcalf JV, James OF. The geographical distribution of primary biliary cirrhosis in a well-defined cohort. Hepatology. 2001;34(6):1083–1088. doi: 10.1053/jhep.2001.29760. [DOI] [PubMed] [Google Scholar]
- 17.McNally RJ, James PW, Ducker S, James OF. Seasonal variation in the patient diagnosis of primary biliary cirrhosis: further evidence for an environmental component to etiology. Hepatology. 2011;54(6):2099–2103. doi: 10.1002/hep.24597. [DOI] [PubMed] [Google Scholar]
- 18.Abu-Mouch S, Selmi C, Benson GD, et al. Geographic clusters of primary biliary cirrhosis. Clin Dev Immunol. 2003;10(2-4):127–131. doi: 10.1080/10446670310001626526. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 19.Ala A, Stanca CM, Bu-Ghanim M, et al. Increased prevalence of primary biliary cirrhosis near Superfund toxic waste sites. Hepatology. 2006;43(3):525–531. doi: 10.1002/hep.21076. [DOI] [PubMed] [Google Scholar]
- 20.Boonstra K, Kunst AE, Stadhouders PH, et al. the Epi PSC PBC study group. Rising incidence and prevalence of primary biliary cirrhosis: a large population-based study. Liver Int. 2014 doi: 10.1111/liv.12434. [DOI] [PubMed] [Google Scholar]
- 21.Corpechot C, Chrétien Y, Chazouillères O, Poupon R. Demographic, lifestyle, medical and familial factors associated with primary biliary cirrhosis. J Hepatol. 2010;53(1):162–169. doi: 10.1016/j.jhep.2010.02.019. [DOI] [PubMed] [Google Scholar]
- 22.Gershwin ME, Selmi C, Worman HJ, et al. USA PBC Epidemiology Group. Risk factors and comorbidities in primary biliary cirrhosis: a controlled interview-based study of 1032 patients. Hepatology. 2005;42(5):1194–1202. doi: 10.1002/hep.20907. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 23.Howel D, Fischbacher CM, Bhopal RS, Gray J, Metcalf JV, James OF. An exploratory population-based case-control study of primary biliary cirrhosis. Hepatology. 2000;31(5):1055–1060. doi: 10.1053/he.2000.7050. [DOI] [PubMed] [Google Scholar]
- 24.Lammert C, Nguyen DL, Juran BD, et al. Questionnaire based assessment of risk factors for primary biliary cirrhosis. Dig Liver Dis. 2013;45(7):589–594. doi: 10.1016/j.dld.2013.01.028. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 25.Liang Y, Yang Z, Zhong R. Smoking, family history and urinary tract infection are associated with primary biliary cirrhosis: a meta-analysis. Hepatol Res. 2011;41(6):572–578. doi: 10.1111/j.1872-034X.2011.00806.x. [DOI] [PubMed] [Google Scholar]
- 26.Mantaka A, Koulentaki M, Chlouverakis G, et al. Primary biliary cirrhosis in a genetically homogeneous population: disease associations and familial occurrence rates. BMC Gastroenterol. 2012;12:110. doi: 10.1186/1471-230X-12-110. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27.Parikh-Patel A, Gold EB, Worman H, Krivy KE, Gershwin ME. Risk factors for primary biliary cirrhosis in a cohort of patients from the United States. Hepatology. 2001;33(1):16–21. doi: 10.1053/jhep.2001.21165. [DOI] [PubMed] [Google Scholar]
- 28.Prince MI, Ducker SJ, James OF. Case-control studies of risk factors for primary biliary cirrhosis in two United Kingdom populations. Gut. 2010;59(4):508–512. doi: 10.1136/gut.2009.184218. [DOI] [PubMed] [Google Scholar]
- 29.Boonstra K, Beuers U, Ponsioen CY. Epidemiology of primary sclerosing cholangitis and primary biliary cirrhosis: a systematic review. J Hepatol. 2012;56(5):1181–1188. doi: 10.1016/j.jhep.2011.10.025. [DOI] [PubMed] [Google Scholar]
- 30.Kim WR, Lindor KD, Locke GR, III, et al. Epidemiology and natural history of primary biliary cirrhosis in a US community. Gastroenterology. 2000;119(6):1631–1636. doi: 10.1053/gast.2000.20197. [DOI] [PubMed] [Google Scholar]
- 31.Metcalf JV, Bhopal RS, Gray J, Howel D, James OF. Incidence and prevalence of primary biliary cirrhosis in the city of Newcastle upon Tyne, England. Int J Epidemiol. 1997;26(4):830–836. doi: 10.1093/ije/26.4.830. [DOI] [PubMed] [Google Scholar]
- 32.Chong VH, Telisinghe PU, Jalihal A. Primary biliary cirrhosis in Brunei Darussalam. Hepatobiliary Pancreat Dis Int. 2010;9(6):622–628. [PubMed] [Google Scholar]
- 33.Watson RG, Angus PW, Dewar M, Goss B, Sewell RB, Smallwood RA. Melbourne Liver Group. Low prevalence of primary biliary cirrhosis in Victoria, Australia. Gut. 1995;36(6):927–930. doi: 10.1136/gut.36.6.927. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 34.Simpson S, Jr, Blizzard L, Otahal P, Van der Mei I, Taylor B. Latitude is significantly associated with the prevalence of multiple sclerosis: a meta-analysis. J Neurol Neurosurg Psychiatry. 2011;82(10):1132–1141. doi: 10.1136/jnnp.2011.240432. [DOI] [PubMed] [Google Scholar]
- 35.Triger DR. Primary biliary cirrhosis: an epidemiological study. BMJ. 1980;281(6243):772–775. doi: 10.1136/bmj.281.6243.772. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36.Vine MF, Stein L, Weigle K, et al. Effects on the immune system associated with living near a pesticide dump site. Environ Health Perspect. 2000;108(12):1113–1124. doi: 10.1289/ehp.001081113. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 37.Carpenter DO, Shen Y, Nguyen T, Le L, Lininger LL. Incidence of endocrine disease among residents of New York areas of concern. Environ Health Perspect. 2001;109(Suppl 6):845–851. doi: 10.1289/ehp.01109s6845. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 38.Amano K, Leung PS, Rieger R, et al. Chemical xenobiotics and mitochondrial autoantigens in primary biliary cirrhosis: identification of antibodies against a common environmental, cosmetic, and food additive, 2-octynoic acid. J Immunol. 2005;174(9):5874–5883. doi: 10.4049/jimmunol.174.9.5874. [DOI] [PubMed] [Google Scholar]
- 39.McNally RJ, Ducker S, James OF. Are transient environmental agents involved in the cause of primary biliary cirrhosis? Evidence from space-time clustering analysis. Hepatology. 2009;50(4):1169–1174. doi: 10.1002/hep.23139. [DOI] [PubMed] [Google Scholar]
- 40.Hézode C, Lonjon I, Roudot-Thoraval F, et al. Impact of smoking on histological liver lesions in chronic hepatitis C. Gut. 2003;52(1):126–129. doi: 10.1136/gut.52.1.126. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 41.Tsochatzis E, Papatheodoridis GV, Manolakopoulos S, Tiniakos DG, Manesis EK, Archimandritis AJ. Smoking is associated with steatosis and severe fibrosis in chronic hepatitis C but not B. Scand J Gastroenterol. 2009;44(6):752–759. doi: 10.1080/00365520902803515. [DOI] [PubMed] [Google Scholar]
- 42.Corpechot C, Gaouar F, Chrétien Y, Johanet C, Chazouillères O, Poupon R. Smoking as an independent risk factor of liver fibrosis in primary biliary cirrhosis. J Hepatol. 2012;56(1):218–224. doi: 10.1016/j.jhep.2011.03.031. [DOI] [PubMed] [Google Scholar]
- 43.Zein CO, Beatty K, Post AB, Logan L, Debanne S, McCullough AJ. Smoking and increased severity of hepatic fibrosis in primary biliary cirrhosis: A cross validated retrospective assessment. Hepatology. 2006;44(6):1564–1571. doi: 10.1002/hep.21423. [DOI] [PubMed] [Google Scholar]
- 44.Bluhm AL, Weinstein J, Sousa JA. Free radicals in tobacco smoke. Nature. 1971;229(5285):500. doi: 10.1038/229500a0. [DOI] [PubMed] [Google Scholar]
- 45.Hecht SS. Tobacco smoke carcinogens and lung cancer. J Natl Cancer Inst. 1999;91(14):1194–1210. doi: 10.1093/jnci/91.14.1194. [DOI] [PubMed] [Google Scholar]
- 46.Pryor WA, Stone K. Oxidants in cigarette smoke. Radicals, hydrogen peroxide, peroxynitrate, and peroxynitrite. Ann N Y Acad Sci. 1993;686:12–27. doi: 10.1111/j.1749-6632.1993.tb39148.x. discussion 27–28. [DOI] [PubMed] [Google Scholar]
- 47.Thielen A, Klus H, Müller L. Tobacco smoke: unraveling a controversial subject. Exp Toxicol Pathol. 2008;60(2-3):141–156. doi: 10.1016/j.etp.2008.01.014. [DOI] [PubMed] [Google Scholar]
- 48.Arnson Y, Shoenfeld Y, Amital H. Effects of tobacco smoke on immunity, inflammation and autoimmunity. J Autoimmun. 2010;34(3):J258–J265. doi: 10.1016/j.jaut.2009.12.003. [DOI] [PubMed] [Google Scholar]
- 49.Glossop JR, Dawes PT, Mattey DL. Association between cigarette smoking and release of tumour necrosis factor alpha and its soluble receptors by peripheral blood mononuclear cells in patients with rheumatoid arthritis. Rheumatology (Oxford) 2006;45(10):1223–1229. doi: 10.1093/rheumatology/kel094. [DOI] [PubMed] [Google Scholar]
- 50.Lee SH, Goswami S, Grudo A, et al. Antielastin autoimmunity in tobacco smoking-induced emphysema. Nat Med. 2007;13(5):567–569. doi: 10.1038/nm1583. [DOI] [PubMed] [Google Scholar]
- 51.Shan M, Cheng HF, Song LZ, et al. Lung myeloid dendritic cells coordinately induce TH1 and TH17 responses in human emphysema. Sci Transl Med. 2009;1(4):4–10. doi: 10.1126/scitranlsmed.3000154. [DOI] [PubMed] [Google Scholar]
- 52.Bernuzzi F, Fenoglio D, Battaglia F, et al. Phenotypical and functional alterations of CD8 regulatory T cells in primary biliary cirrhosis. J Autoimmun. 2010;35(3):176–180. doi: 10.1016/j.jaut.2010.06.004. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 53.Harada K, Van de Water J, Leung PS, et al. In situ nucleic acid hybridization of cytokines in primary biliary cirrhosis: predominance of the Th1 subset. Hepatology. 1997;25(4):791–796. doi: 10.1002/hep.510250402. [DOI] [PubMed] [Google Scholar]
- 54.Shimoda S, Ishikawa F, Kamihira T, et al. Autoreactive T-cell responses in primary biliary cirrhosis are proinflammatory whereas those of controls are regulatory. Gastroenterology. 2006;131(2):606–618. doi: 10.1053/j.gastro.2006.05.056. [DOI] [PubMed] [Google Scholar]
- 55.Kroening PR, Barnes TW, Pease L, Limper A, Kita H, Vassallo R. Cigarette smoke-induced oxidative stress suppresses generation of dendritic cell IL-12 and IL-23 through ERK-dependent pathways. J Immunol. 2008;181(2):1536–1547. doi: 10.4049/jimmunol.181.2.1536. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 56.Burroughs AK, Rosenstein IJ, Epstein O, Hamilton-Miller JM, Brumfitt W, Sherlock S. Bacteriuria and primary biliary cirrhosis. Gut. 1984;25(2):133–137. doi: 10.1136/gut.25.2.133. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 57.Rosenstein IJ, Hazlehurst GR, Burroughs AK, Epstein O, Sherlock S, Brumfitt W. Recurrent bacteriuria and primary biliary cirrhosis: ABO blood group, P1 blood group, and secretor status. J Clin Pathol. 1984;37(9):1055–1058. doi: 10.1136/jcp.37.9.1055. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 58.Butler P, Hamilton-Miller JM, McIntyre N, Burroughs AK. Natural history of bacteriuria in women with primary biliary cirrhosis and the effect of antimicrobial therapy in symptomatic and asymptomatic groups. Gut. 1995;36(6):931–934. doi: 10.1136/gut.36.6.931. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 59.Floreani A, Bassendine MF, Mitchison H, Freeman R, James OF. No specific association between primary biliary cirrhosis and bacteriuria? J Hepatol. 1989;8(2):201–207. doi: 10.1016/0168-8278(89)90008-1. [DOI] [PubMed] [Google Scholar]
- 60.Varyani FK, West J, Card TR. An increased risk of urinary tract infection precedes development of primary biliary cirrhosis. BMC Gastroenterol. 2011;11:95. doi: 10.1186/1471-230X-11-95. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 61.Varyani FK, West J, Card TR. Primary biliary cirrhosis does not increase the risk of UTIs following diagnosis compared to other chronic liver diseases? Liver Int. 2013;33(3):384–388. doi: 10.1111/liv.12107. [DOI] [PubMed] [Google Scholar]
- 62.Ulett GC, Totsika M, Schaale K, Carey AJ, Sweet MJ, Schembri MA. Uropathogenic Escherichia coli virulence and innate immune responses during urinary tract infection. Curr Opin Microbiol. 2013;16(1):100–107. doi: 10.1016/j.mib.2013.01.005. [DOI] [PubMed] [Google Scholar]
- 63.Wang J, Yang GX, Zhang W, et al. Escherichia coli infection induces autoimmune cholangitis and antimitochondrial antibodies in NOD.B6 (Idd10/Idd18) mice. Clin Exp Immunol. 2014;175(2):192–201. doi: 10.1111/cei.12224. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 64.Mattner J, Savage PB, Leung P, et al. Liver autoimmunity triggered by microbial activation of natural killer T cells. Cell Host Microbe. 2008;3(5):304–315. doi: 10.1016/j.chom.2008.03.009. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 65.Nilsson HO, Taneera J, Castedal M, Glatz E, Olsson R, Wadström T. Identification of Helicobacter pylori and other Helicobacter species by PCR, hybridization, and partial DNA sequencing in human liver samples from patients with primary sclerosing cholangitis or primary biliary cirrhosis. J Clin Microbiol. 2000;38(3):1072–1076. doi: 10.1128/jcm.38.3.1072-1076.2000. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 66.Abdulkarim AS, Petrovic LM, Kim WR, Angulo P, Lloyd RV, Lindor KD. Primary biliary cirrhosis: an infectious disease caused by Chlamydia pneumoniae? J Hepatol. 2004;40(3):380–384. doi: 10.1016/j.jhep.2003.11.033. [DOI] [PubMed] [Google Scholar]
- 67.Vilagut L, Parés A, Viñas O, Vila J, Jiménez de Anta MT, Rodés J. Antibodies to mycobacterial 65-kD heat shock protein cross-react with the main mitochondrial antigens in patients with primary biliary cirrhosis. Eur J Clin Invest. 1997;27(8):667–672. doi: 10.1046/j.1365-2362.1997.1690724.x. [DOI] [PubMed] [Google Scholar]
- 68.Barzilai O, Sherer Y, Ram M, Izhaky D, Anaya JM, Shoenfeld Y. Epstein-Barr virus and cytomegalovirus in autoimmune diseases: are they truly notorious? A preliminary report. Ann N Y Acad Sci. 2007;1108:567–577. doi: 10.1196/annals.1422.059. [DOI] [PubMed] [Google Scholar]
- 69.Morshed SA, Nishioka M, Saito I, Komiyama K, Moro I. Increased expression of Epstein-Barr virus in primary biliary cirrhosis patients. Gastroenterol Jpn. 1992;27(6):751–758. doi: 10.1007/BF02806528. [DOI] [PubMed] [Google Scholar]
- 70.Bogdanos DP, Pares A, Baum H, et al. Disease-specific cross-reactivity between mimicking peptides of heat shock protein of Mycobacterium gordonae and dominant epitope of E2 subunit of pyruvate dehydrogenase is common in Spanish but not British patients with primary biliary cirrhosis. J Autoimmun. 2004;22(4):353–362. doi: 10.1016/j.jaut.2004.03.002. [DOI] [PubMed] [Google Scholar]
- 71.Durazzo M, Rosina F, Premoli A, et al. Lack of association between seroprevalence of Helicobacter pylori infection and primary biliary cirrhosis. World J Gastroenterol. 2004;10(21):3179–3181. doi: 10.3748/wjg.v10.i21.3179. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 72.Taylor-Robinson D, Sharif AW, Dhanjal NS, Taylor-Robinson SD. Chlamydia pneumoniae infection is an unlikely cause of primary biliary cirrhosis. J Hepatol. 2005;42(5):779–780. doi: 10.1016/j.jhep.2004.08.005. [DOI] [PubMed] [Google Scholar]
- 73.Shapira Y, Agmon-Levin N, Renaudineau Y, et al. Serum markers of infections in patients with primary biliary cirrhosis: evidence of infection burden. Exp Mol Pathol. 2012;93(3):386–390. doi: 10.1016/j.yexmp.2012.09.012. [DOI] [PubMed] [Google Scholar]
- 74.Gershwin ME, Mackay IR. The causes of primary biliary cirrhosis: convenient and inconvenient truths. Hepatology. 2008;47(2):737–745. doi: 10.1002/hep.22042. [DOI] [PubMed] [Google Scholar]
- 75.Oldstone MB. Molecular mimicry as a mechanism for the cause and a probe uncovering etiologic agent(s) of autoimmune disease. Curr Top Microbiol Immunol. 1989;145:127–135. doi: 10.1007/978-3-642-74594-2_11. [DOI] [PubMed] [Google Scholar]
- 76.Oldstone MB. Molecular mimicry, microbial infection, and auto-immune disease: evolution of the concept. Curr Top Microbiol Immunol. 2005;296:1–17. doi: 10.1007/3-540-30791-5_1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 77.Bogdanos D, Pusl T, Rust C, Vergani D, Beuers U. Primary biliary cirrhosis following Lactobacillus vaccination for recurrent vaginitis. J Hepatol. 2008;49(3):466–473. doi: 10.1016/j.jhep.2008.05.022. [DOI] [PubMed] [Google Scholar]
- 78.Bogdanos DP, Baum H, Grasso A, et al. Microbial mimics are major targets of crossreactivity with human pyruvate dehydrogenase in primary biliary cirrhosis. J Hepatol. 2004;40(1):31–39. doi: 10.1016/s0168-8278(03)00501-4. [DOI] [PubMed] [Google Scholar]
- 79.Bogdanos DP, Baum H, Okamoto M, et al. Primary biliary cirrhosis is characterized by IgG3 antibodies cross-reactive with the major mitochondrial autoepitope and its Lactobacillus mimic. Hepatology. 2005;42(2):458–465. doi: 10.1002/hep.20788. [DOI] [PubMed] [Google Scholar]
- 80.Padgett KA, Selmi C, Kenny TP, et al. Phylogenetic and immunological definition of four lipoylated proteins from Novosphingobium aromaticivorans, implications for primary biliary cirrhosis. J Autoimmun. 2005;24(3):209–219. doi: 10.1016/j.jaut.2005.01.012. [DOI] [PubMed] [Google Scholar]
- 81.Selmi C, Balkwill DL, Invernizzi P, et al. Patients with primary biliary cirrhosis react against a ubiquitous xenobiotic-metabolizing bacterium. Hepatology. 2003;38(5):1250–1257. doi: 10.1053/jhep.2003.50446. [DOI] [PubMed] [Google Scholar]
- 82.Shimoda S, Nakamura M, Shigematsu H, et al. Mimicry peptides of human PDC-E2 163-176 peptide, the immunodominant T-cell epitope of primary biliary cirrhosis. Hepatology. 2000;31(6):1212–1216. doi: 10.1053/jhep.2000.8090. [DOI] [PubMed] [Google Scholar]
- 83.Selmi C, De Santis M, Cavaciocchi F, Gershwin ME. Infectious agents and xenobiotics in the etiology of primary biliary cirrhosis. Dis Markers. 2010;29(6):287–299. doi: 10.3233/DMA-2010-0746. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 84.Long SA, Quan C, Van de Water J, et al. Immunoreactivity of organic mimeotopes of the E2 component of pyruvate dehydrogenase: connecting xenobiotics with primary biliary cirrhosis. J Immunol. 2001;167(5):2956–2963. doi: 10.4049/jimmunol.167.5.2956. [DOI] [PubMed] [Google Scholar]
- 85.Leung PS, Quan C, Park O, et al. Immunization with a xenobiotic 6-bromohexanoate bovine serum albumin conjugate induces anti-mitochondrial antibodies. J Immunol. 2003;170(10):5326–5332. doi: 10.4049/jimmunol.170.10.5326. [DOI] [PubMed] [Google Scholar]
- 86.Wakabayashi K, Lian ZX, Leung PS, et al. Loss of tolerance in C57BL/6 mice to the autoantigen E2 subunit of pyruvate dehydrogenase by a xenobiotic with ensuing biliary ductular disease. Hepatology. 2008;48(2):531–540. doi: 10.1002/hep.22390. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 87.Wakabayashi K, Yoshida K, Leung PS, et al. Induction of autoimmune cholangitis in non-obese diabetic (NOD).1101 mice following a chemical xenobiotic immunization. Clin Exp Immunol. 2009;155(3):577–586. doi: 10.1111/j.1365-2249.2008.03837.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 88.Chen RC, Naiyanetr P, Shu SA, et al. Antimitochondrial antibody heterogeneity and the xenobiotic etiology of primary biliary cirrhosis. Hepatology. 2013;57(4):1498–1508. doi: 10.1002/hep.26157. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 89.Naiyanetr P, Butler JD, Meng L, et al. Electrophile-modified lipoic derivatives of PDC-E2 elicits anti-mitochondrial antibody reactivity. J Autoimmun. 2011;37(3):209–216. doi: 10.1016/j.jaut.2011.06.001. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 90.Bernal W, Meda F, Ma Y, Bogdanos DP, Vergani D. Disease-specific autoantibodies in patients with acute liver failure: the King’s College London Experience. Hepatology. 2008;47(3):1096–1097. doi: 10.1002/hep.22179. author reply 1097. [DOI] [PubMed] [Google Scholar]
- 91.Leung PS, Rossaro L, Davis PA, et al. Acute Liver Failure Study Group. Antimitochondrial antibodies in acute liver failure: implications for primary biliary cirrhosis. Hepatology. 2007;46(5):1436–1442. doi: 10.1002/hep.21828. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 92.Chang TW, Pan AY. Cumulative environmental changes, skewed antigen exposure, and the increase of allergy. Adv Immunol. 2008;98:39–83. doi: 10.1016/S0065-2776(08)00402-1. [DOI] [PubMed] [Google Scholar]
- 93.Strachan DP. Hay fever, hygiene, and household size. BMJ. 1989;299(6710):1259–1260. doi: 10.1136/bmj.299.6710.1259. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 94.Rook GA. 99th Dahlem conference on infection, inflammation and chronic inflammatory disorders: darwinian medicine and the ’hygiene’ or ’old friends’ hypothesis. Clin Exp Immunol. 2010;160(1):70–79. doi: 10.1111/j.1365-2249.2010.04133.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 95.Brown EM, Arrieta MC, Finlay BB. A fresh look at the hygiene hypothesis: how intestinal microbial exposure drives immune effector responses in atopic disease. Semin Immunol. 2013;25(5):378–387. doi: 10.1016/j.smim.2013.09.003. [DOI] [PubMed] [Google Scholar]
- 96.Rook GA. Hygiene hypothesis and autoimmune diseases. Clin Rev Allergy Immunol. 2012;42(1):5–15. doi: 10.1007/s12016-011-8285-8. [DOI] [PubMed] [Google Scholar]
- 97.Yin L, Scott-Browne J, Kappler JW, Gapin L, Marrack P. T cells and their eons-old obsession with MHC. Immunol Rev. 2012;250(1):49–60. doi: 10.1111/imr.12004. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 98.Yin Y, Li Y, Mariuzza RA. Structural basis for self-recognition by autoimmune T-cell receptors. Immunol Rev. 2012;250(1):32–48. doi: 10.1111/imr.12002. [DOI] [PubMed] [Google Scholar]
- 99.Guéry L, Hugues S. Tolerogenic and activatory plasmacytoid dendritic cells in autoimmunity. Front Immunol. 2013;4:59. doi: 10.3389/fimmu.2013.00059. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 100.Tian L, Humblet-Baron S, Liston A. Immune tolerance: are regulatory T cell subsets needed to explain suppression of autoimmunity? BioEssays. 2012;34(7):569–575. doi: 10.1002/bies.201100180. [DOI] [PubMed] [Google Scholar]
- 101.Bogdanos DP, Smyk DS, Invernizzi P, et al. Tracing environmental markers of autoimmunity: introducing the infectome. Immunol Res. 2013;56(2-3):220–240. doi: 10.1007/s12026-013-8399-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 102.Wild CP. Complementing the genome with an “exposome”: the outstanding challenge of environmental exposure measurement in molecular epidemiology. Cancer Epidemiol Biomarkers Prev. 2005;14(8):1847–1850. doi: 10.1158/1055-9965.EPI-05-0456. [DOI] [PubMed] [Google Scholar]
- 103.Gause WC, Wynn TA, Allen JE. Type 2 immunity and wound healing: evolutionary refinement of adaptive immunity by helminths. Nat Rev Immunol. 2013;13(8):607–614. doi: 10.1038/nri3476. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 104.Taylor MD, van der Werf N, Maizels RM. T cells in helminth infection: the regulators and the regulated. Trends Immunol. 2012;33(4):181–189. doi: 10.1016/j.it.2012.01.001. [DOI] [PubMed] [Google Scholar]
- 105.Hussaarts L, van der Vlugt LE, Yazdanbakhsh M, Smits HH. Regulatory B-cell induction by helminths: implications for allergic disease. J Allergy Clin Immunol. 2011;128(4):733–739. doi: 10.1016/j.jaci.2011.05.012. [DOI] [PubMed] [Google Scholar]
- 106.Allen JE, Maizels RM. Diversity and dialogue in immunity to helminths. Nat Rev Immunol. 2011;11(6):375–388. doi: 10.1038/nri2992. [DOI] [PubMed] [Google Scholar]
- 107.Aoyama H, Hirata T, Sakugawa H, et al. An inverse relationship between autoimmune liver diseases and Strongyloides stercoralis infection. Am J Trop Med Hyg. 2007;76(5):972–976. [PubMed] [Google Scholar]
