Table 2.
Gene | Primer | Primer sequence (5′-3′) | Reference |
---|---|---|---|
PM-PCR and Capsular serotypes | |||
KMT1 | PMPCR-F PMPCR-R |
ATCCGCTATTTACCCAGTGG GCTGTAAACGAACTCGCCAC |
[22] |
hyaD-hyaC | capA F capA R |
GATGCCAAAATCGCAGTCAG TGTTGCCATCATTGTCAGTG |
[23] |
bcbD | capB F capB R |
CATTTATCCAAGCTCCACC GCCCGAGAGTTTCAATCC |
[23] |
dcbF | capD F capD R |
TTACAAAAGAAAGACTAGGAGCCC CATCTACCCACTCAACCATATCAG |
[23] |
ecbJ | capE F capE R |
TCCGCAGAAAATTATTGACTC GCTTGCTGCTTGATTTTGTC |
[23] |
fcbD | capF F capF R |
AATCGGAGAACGCAGAAATCAG TTCCGCCGTCAATTACTCTG |
[23] |
| |||
Iron acquisition genes | |||
tbpA | tbpA F tbpA R |
GGACAGTGCATATAACTTGTT GGACAGTGCATATAACTTGTTTACTA |
[32] |
hgbA | hgbA F hgbA R |
CATATCGGATCCTTGAAACCAGAGGAAGCAAAAA GAATCGGAGCTCACGACCTGGTGAGTAAAAACGAT |
In-house [33] |
hgbB | HgbB F HgbB R |
ACCGCGTTGGAATTATGATTG CATTGAGTACGGCTTGACAT |
[12] |
| |||
Adhesins | |||
ptfA | ptfA F ptfA R |
AGGATCCATGAAAAAAGCCATTT GGAGCTCTTATGCGCAAAATCCTG |
In-house |
pfhA | pfhA F pfhA R |
TAAGCCTATCGGTTCAAGTCG GATAAATCTACCCCGTCCTCT |
In-house |
| |||
Sialidases | |||
NanB | NanB F NanB R |
GTCCTATAAAGTGACGCCGA ACAGCAAAGGAAGACTGTCC |
[12] |
nanH | nanH F nanH R |
CACTGCCTTATAGCCGTATTC AGCACTGTTACCCGAACCC |
[12] |
| |||
Dermonecrotoxin | |||
ToxA | ToxA F ToxA R |
TCTTAGATGAGCGACAAGG GAATGCCACACCTCTATAG |
[34] |