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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2014 Sep 10;70(Pt 10):183–187. doi: 10.1107/S1600536814019898

Crystal structures and hydrogen bonding in the co-crystalline adducts of 3,5-di­nitro­benzoic acid with 4-amino­salicylic acid and 2-hy­droxy-3-(1H-indol-3-yl)propenoic acid

Graham Smith a,*, Daniel E Lynch b
PMCID: PMC4257166  PMID: 25484647

The crystal structures of the co-crystal adducts of 3,5-di­nitro­benzoic acid with 4-amino­salicylic acid (a 2:2:0.4-hydrate) and with 2-hy­droxy-3-(1H-indol-3-yl)propenoic acid (a 1:1:1 d 6-DMSO solvate) show, respectively, polymeric and hexa­molecular hydrogen-bonded and π–π-bonded structures

Keywords: co-crystal structures; carb­oxy­lic acid mol­ecular adducts; 3,5-di­nitro­benzoic acid; 4-amino­salicylic acid; 2-hy­droxy-3-(1H-indol-3-yl)propenoic acid; hydrogen bonding; homodimers; heterodimers; π–π inter­actions.

Abstract

The structures of the co-crystalline adducts of 3,5-di­nitro­benzoic acid (3,5-DNBA) with 4-amino­salicylic acid (PASA), the 1:1 partial hydrate, C7H4N2O6·C7H7NO3·0.2H2O, (I), and with 2-hy­droxy-3-(1H-indol-3-yl)propenoic acid (HIPA), the 1:1:1 d 6-dimethyl sulfoxide solvate, C7H4N2O6·C11H9NO3·C2D6OS, (II), are reported. The crystal substructure of (I) comprises two centrosymmetric hydrogen-bonded R 2 2(8) homodimers, one with 3,5-DNBA, the other with PASA, and an R 2 2(8) 3,5-DNBA–PASA heterodimer. In the crystal, inter-unit amine N—H⋯O and water O—H⋯O hydrogen bonds generate a three-dimensional supra­molecular structure. In (II), the asymmetric unit consists of the three constituent mol­ecules, which form an essentially planar cyclic hydrogen-bonded heterotrimer unit [graph set R 3 2(17)] through carboxyl, hy­droxy and amino groups. These units associate across a crystallographic inversion centre through the HIPA carb­oxy­lic acid group in an R 2 2(8) hydrogen-bonding association, giving a zero-dimensional structure lying parallel to (100). In both structures, π–π inter­actions are present [minimum ring-centroid separations = 3.6471 (18) Å in (I) and 3.5819 (10) Å in (II)].

Chemical context  

3,5-Di­nitro­benzoic acid (3,5-DNBA) has been an important acid for the formation of crystalline materials, which have allowed structural characterization using single crystal X-ray methods. Most commonly proton-transfer salts are formed with organic Lewis bases, e.g. with 1-H-pyrazole (Aakeröy et al., 2012) but salt–adducts are also known, e.g. 2-pyridyl-4′-pyrid­inium+–3,5-DNBA–3,5-DNBA (1/1/1) (Chantra­prom­ma et al., 2002). Although co-crystalline non-transfer mol­ecular adducts with 3,5-DNBA are now relatively common, inter­est was stimulated with the original reporting of non-transfer adduct formation with 4-amino­benzoic acid to form a chiral 1:1 co-crystalline material (Etter & Frankenbach, 1989), which represented one of the earliest examples of designed crystal engineering, in that case with a view to producing non-linear optical materials. In the crystalline state, carb­oxy­lic acids usually form cyclic hydrogen-bonded dimers through head-to-head carboxyl O—H⋯O hydrogen bonds (Leiserowitz, 1976) [graph set Inline graphic(8)]. This is the case with 3,5-DNBA (A), which when co-crystallized with certain aromatic acids, e.g. 4-(N,N-di­methyl­amino)­benzoic acid (B), gives separate mixed AA and BB homodimer pairs (Sharma et al., 1993). Although uncommon with 3,5-DNBA, with other aromatic acid analogues, AB heterodimer formation appears more prevalent, e.g. the 1:1 adducts of 3,5-di­nitro­cinnamic acid with 4-(N,N-di­methyl­amino)­benzoic acid and 2,4-di­nitro­cinnamic acid with 2,5-di­meth­oxy­cinnamic acid (Sharma et al., 1993). In both AA and BB structure types, π–π inter­actions are commonly involved in stabilization, usually accompanied by enhanced colour generation. Absence of dimer pairs in 3,5-DNBA adducts is usually the result of preferential hydrogen bonding with solvent mol­ecules, such as is found in the structure of 3,5-DNBA–phen­oxy­acetic acid–water (2/1/1) (Lynch et al., 1991), in which a cyclic Inline graphic(10) inter­action is found, involving two 3,5-DNBA mol­ecules and the water mol­ecule. The title adducts C7H4N2O6·C7H7NO3·0.2H2O (I) and C7H4N2O6·C11H9NO3·C2D6OS (II) were prepared from the inter­action of 3,5-DNBA with 4-amino­salicylic acid (PASA) and 2-hy­droxy-3-(1H-indol-3-yl)propenoic acid (HIPA), respectively, and the structures are reported herein. With (II), the incorporation of C2D6OS resulted from recrystallization from d 6-di­methyl­sulfoxide.graphic file with name e-70-00183-scheme1.jpg

Structural commentary  

In the co-crystal of 3,5-DNBA with 4-amino­salicylic acid, (I) (Fig. 1), the asymmetric unit consists of two PASA mol­ecules (A and B), two 3,5-DNBA mol­ecules (C and D) and a partially occupied water mol­ecule of solvation (O1W), with site occupancy = 0.4. However, what is most unusual in this structure is the presence of not four homodimers in the unit cell, but two homodimers (centrosymmetric PASA A–Ai and 3,5-DNBA C–Cii pairs), as well as two heterodimer B–D pairs (for symmetry codes, see Table 1). All dimers are formed through the common cyclic Inline graphic(8) ring motif. Present in the PASA mol­ecules are the expected intra­molecular salicylic acid phenolic O—H⋯Ocarbox­yl hydrogen bonds, also present in the parent acid (Montis & Hursthouse, 2012).

Figure 1.

Figure 1

Mol­ecular conformation and atom-naming scheme for the two PABA mol­ecules (A and B), the two 3,5-DNBA mol­ecules (C and D) and the disordered water mol­ecule (O1W) in the asymmetric unit of adduct (I), with displacement ellipsoids drawn at the 40% probability level. Inter-species hydrogen bonds are shown as dashed lines.

Table 1. Hydrogen-bond geometry (Å, °) for (I) .

D—H⋯A D—H H⋯A DA D—H⋯A
O11A—H11A⋯O12A i 0.91 (3) 1.78 (3) 2.678 (3) 175 (3)
O11B—H11B⋯O11D 0.94 (3) 1.74 (3) 2.673 (3) 175 (3)
O11C—H11C⋯O12C ii 0.91 (3) 1.73 (3) 2.640 (3) 177 (2)
O12D—H12D⋯O12B 0.90 (3) 1.71 (3) 2.610 (3) 176 (2)
N4B—H41B⋯O31C 0.86 (3) 2.58 (3) 3.350 (4) 150 (3)
N4B—H42B⋯O52D iii 0.85 (2) 2.44 (3) 3.210 (4) 151 (3)
O2A—H2A⋯O12A 0.84 1.89 2.625 (3) 145
O2B—H2B⋯O12B 0.84 1.85 2.587 (3) 145
O1W—H11W⋯O2B 0.90 2.05 2.952 (6) 179
O1W—H12W⋯O32C iv 0.93 2.08 3.005 (5) 179
C3B—H3B⋯O31C 0.95 2.58 3.382 (3) 142
C4D—H4D⋯O32C v 0.95 2.49 3.425 (3) 170

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic.

In the ternary co-crystal of 3,5-DNBA (B) with 2-hy­droxy-3-(1H-indol-3-yl)propenoic acid (A) and d 6-di­methyl­sulfoxide (C), (II) the three mol­ecules inter-associate through carb­oxy­lic acid O—H⋯O and N—H⋯O hydrogen bonds, forming a cyclic Inline graphic(17) heterotrimeric asymmetric unit (Fig. 2). This unit is essentially planar with a dihedral angle of 4.97 (7)° between the indole ring of A and the benzene ring of B. With the HIPA mol­ecule there is a maximum deviation from the least-squares plane of the 15-atom mol­ecule of 0.120 (2) Å (C6A). The planar conformation of the acid side chain in this mol­ecule is maintained by the presence of delocalization extending from C2A of the ring to O14A of the carb­oxy­lic acid group [torsion angle C11A—C12A—C13A—O14A = −177.43 (16)°]. This is also found in the parent acid, which has the similar enol configuration as in (II) [corresponding torsion angle 170.0 (3)°] with an E orientation and in the crystal forms a centrosymmetric homodimer with an Inline graphic(8) hydrogen-bond motif (Okabe & Adachi, 1998).

Figure 2.

Figure 2

Mol­ecular conformation and atom-naming scheme for adduct (II), with displacement ellipsoids drawn at the 40% probability level. Inter-species hydrogen bonds are shown as dashed lines.

In the adducts (I) and (II), the 3,5-DNBA mol­ecules are essentially planar with the exception of the C3-nitro groups of the C mol­ecule in (I), and the B mol­ecule in (II), where the defining C2—C3—N3—O32 torsion angles are 158.2 (3) and 168.39 (17)°, respectively. The overall torsion angle range for the remaining groups in both (I) and (II) is 170.8 (3)–179.2 (2)°. These minor deviations from planarity are consistent with conformational features of both polymorphs of the parent acid 3,5-DNBA (Prince et al., 1991) and in examples both of its salts (Aakeröy et al., 2012) and its adducts (Aakeröy et al., 2001; Jones et al., 2010; Chadwick et al., 2009).

Supra­molecular features  

In the supra­molecular structure of (I), the carb­oxy­lic acid dimers are extended through inter-dimer or inter-heterodimer amine N—H⋯O and water O—H⋯O hydrogen bonds (Table 1), giving a three-dimensional framework structure (Fig. 3). Within the structure there are a number of inter-ring π–π associations [ring-centroid separations: A⋯C vi, 3.7542 (16); A⋯C vii, 3.6471 (16); B⋯D viii, 3.6785 (14) Å] [symmetry codes: (vi) x + 1, y − 1, z; (vii) x, y − 1, z; (viii) −x + 1, −y + 1, −z]. The B⋯D heterodimers in the π–π association are not only related by inversion but are cyclically linked by the amine N4B—H⋯O52Diii hydrogen bond, forming an enlarged Inline graphic(32) ring motif. This cyclic relationship with associated π–π bonding is also found in some aromatic homodimer carb­oxy­lic acid structures (Sharma et al., 1993). In (I), the disordered water mol­ecule also provides a link between the B mol­ecule [the phenolic O2B acceptor] and the C mol­ecule [the nitro O32C iv acceptor]. Also present in the structure are two very weak C—H⋯Onitro inter­actions [C3B—H⋯O31C 3.382 (3) and C4D—H⋯O32C v 3.425 (3) Å; Table 1]. The H atoms of the N4A amine group have no acceptors with the PASA A homodimer unassociated in the overall structure except for the previously mentioned π–π ring inter­actions.

Figure 3.

Figure 3

A partial expansion in the three-dimensional hydrogen-bonded structure of the adduct (I) in the unit cell, viewed down a. Non-associative H atoms have been omitted. For symmetry codes, see Table 1.

In (II) the hydrogen-bonded heterotrimer units associate across a crystallographic inversion centre through the HIPA carb­oxy­lic acid group [O13A—H⋯O14A]i in a cyclic Inline graphic(8) hydrogen-bonding association, giving a zero-dimensional heterohexa­mer structure which is essentially planar and lies parallel to (100) (Fig. 4). Only two very weak inter­molecular d 6-DMSO methyl C—H⋯O inter­actions are present between these units inter­actions [C1C—D⋯O14A ii 3.472 (3) and C1C—D⋯O12B iii 3.372 (3) Å; Table 2]. In the structure, π–π inter­actions are also present between the benzene rings of the A and B viii mol­ecules] [minimum ring-centroid separation 3.5819 (10) Å; symmetry code: (viii) −x, −y + 2, −z + 1].

Figure 4.

Figure 4

The centrosymmetric hydrogen-bonded heterohexa­meric structure of the adduct (II) in the unit cell, viewed down a. For symmetry code (i), see Table 2.

Table 2. Hydrogen-bond geometry (Å, °) for (II) .

D—H⋯A D—H H⋯A DA D—H⋯A
N1A—H1A⋯O2C 0.87 (2) 2.02 (2) 2.856 (2) 161 (2)
O11B—H11B⋯O2C 0.88 (2) 1.72 (2) 2.591 (2) 174 (2)
O12A—H12A⋯O14A 0.88 (2) 2.15 (2) 2.672 (2) 118 (2)
O12A—H12A⋯O52B 0.88 (2) 2.20 (2) 2.951 (2) 144 (2)
O13A—H13A⋯O14A i 0.90 (2) 1.75 (2) 2.644 (2) 178 (2)
C1C—D12C⋯O14A ii 0.98 2.56 3.472 (3) 155
C1C—D13C⋯O12B iii 0.98 2.52 3.372 (3) 145

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Synthesis and crystallization  

The title co-crystalline adducts (I) and (II) were prepared by dissolving equimolar qu­anti­ties of 3,5-di­nitro­benzoic acid and the respective acids 4-amino­salicylic acid [for (I)] or (1H-indol-3-yl)propenoic acid [for (II)] in ethanol and heating under reflux for 5 min after which room-temperature evaporation of the solutions gave for (I), yellow prisms and for (II), a red powder. This latter compound was dissolved in d 6-deuterated DMSO and solvent diffusion of water into this solution gave red prisms of (II). Specimens were cleaved from both prismatic crystals for the X-ray analyses.

Refinement details  

Crystal data, data collection and structure refinement details are summarized in Table 3. Hydrogen atoms on all potentially inter­active O—H and N—H groups in all mol­ecular species were located by difference-Fourier methods and positional and displacement parameters were refined for all but those of the phenolic O2A and O2B groups and on the disordered water molecule O1W, with riding restraints [O—H bond length = 0.90 (2) Å and U iso(H) = 1.5U eq(O) or N—H = 0.88 (2) Å, with U iso(H) = 1.2U eq(N)]. The phenolic and water H atoms were set invariant with U iso(H) = 1.2U eq(O). Other H atoms were included in the refinement at calculated positions [C—H (aromatic) = 0.95 or (methyl­ene) 0.99 Å] , with U iso(H) = 1.2U eq(C), using a riding-model approximation. The site-occupancy factor for the disordered water mol­ecule of solvation was determined as 0.403 (4) [for the (2:2) 3,5-DNBA:PASA pair in the asymmetric unit] and was subsequently fixed as 0.40. In the structure of (I), the relatively large maximum residual electron density (0.835 e Å−3) was located 0.80 Å from H6B.

Table 3. Experimental details.

  (I) (II)
Crystal data
Chemical formula C7H4N2O6·C7H7NO3·0.2H2O C7H4N2O6·C11H9NO3·C2D6OS
M r 368.86 499.49
Crystal system, space group Triclinic, P Inline graphic Triclinic, P Inline graphic
Temperature (K) 200 200
a, b, c (Å) 7.0717 (5), 7.5974 (4), 28.7175 (19) 7.6488 (6), 12.3552 (10), 13.3768 (10)
α, β, γ (°) 87.926 (5), 86.498 (6), 87.584 (5) 116.833 (8), 96.274 (6), 97.626 (7)
V3) 1537.77 (17) 1097.40 (18)
Z 4 2
Radiation type Mo Kα Mo Kα
μ (mm−1) 0.14 0.21
Crystal size (mm) 0.35 × 0.35 × 0.30 0.45 × 0.40 × 0.32
 
Data collection
Diffractometer Oxford Diffraction Gemini-S CCD detector Oxford Diffraction Gemini-S CCD detector
Absorption correction Multi-scan (CrysAlis PRO; Agilent, 2013) Multi-scan (CrysAlis PRO; Agilent, 2013)
T min, T max 0.966, 0.990 0.94, 0.98
No. of measured, independent and observed [I > 2σ(I)] reflections 10302, 6044, 4158 7457, 4310, 3490
R int 0.027 0.023
(sin θ/λ)max−1) 0.617 0.617
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.056, 0.149, 1.01 0.040, 0.097, 1.02
No. of reflections 6044 4310
No. of parameters 502 319
No. of restraints 8 4
H-atom treatment H atoms treated by a mixture of independent and constrained refinement H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.86, −0.28 0.26, −0.25

Computer programs: CrysAlis PRO (Agilent, 2013), SHELXS97 and SHELXL97 (Sheldrick, 2008) within WinGX (Farrugia, 2012) and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I, II. DOI: 10.1107/S1600536814019898/sj5421sup1.cif

e-70-00183-sup1.cif (66.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814019898/sj5421Isup2.hkl

e-70-00183-Isup2.hkl (295.8KB, hkl)

Structure factors: contains datablock(s) II. DOI: 10.1107/S1600536814019898/sj5421IIsup3.hkl

e-70-00183-IIsup3.hkl (211.2KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814019898/sj5421Isup4.cml

Supporting information file. DOI: 10.1107/S1600536814019898/sj5421IIsup5.cml

CCDC references: 1022646, 1022647

Additional supporting information: crystallographic information; 3D view; checkCIF report

Acknowledgments

The authors thank the Faculty of Science and Engineering, Queensland University of Technology for financial support.

supplementary crystallographic information

Crystal data

C7H4N2O6·C11H9NO3·C2D6OS Z = 2
Mr = 499.49 F(000) = 512
Triclinic, P1 Dx = 1.511 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.6488 (6) Å Cell parameters from 2343 reflections
b = 12.3552 (10) Å θ = 3.3–28.4°
c = 13.3768 (10) Å µ = 0.21 mm1
α = 116.833 (8)° T = 200 K
β = 96.274 (6)° Block, red
γ = 97.626 (7)° 0.45 × 0.40 × 0.32 mm
V = 1097.40 (18) Å3

Data collection

Oxford Diffraction Gemini-S CCD detector diffractometer 4310 independent reflections
Radiation source: Enhance (Mo) X-ray source 3490 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.023
Detector resolution: 16.077 pixels mm-1 θmax = 26.0°, θmin = 3.3°
ω scans h = −9→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013) k = −15→15
Tmin = 0.94, Tmax = 0.98 l = −16→16
7457 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097 H atoms treated by a mixture of independent and constrained refinement
S = 1.02 w = 1/[σ2(Fo2) + (0.0394P)2 + 0.3315P] where P = (Fo2 + 2Fc2)/3
4310 reflections (Δ/σ)max < 0.001
319 parameters Δρmax = 0.26 e Å3
4 restraints Δρmin = −0.25 e Å3

Special details

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O11B 0.11950 (19) 0.35376 (12) 0.50949 (11) 0.0386 (5)
O12B 0.0099 (2) 0.24989 (12) 0.59702 (12) 0.0458 (5)
O31B −0.19578 (19) 0.48461 (14) 0.95269 (12) 0.0438 (5)
O32B −0.0994 (2) 0.68345 (14) 1.05107 (12) 0.0483 (5)
O51B 0.1446 (2) 0.90405 (13) 0.86272 (12) 0.0504 (5)
O52B 0.2503 (2) 0.80830 (13) 0.71029 (12) 0.0443 (5)
N3B −0.1163 (2) 0.58414 (16) 0.96484 (14) 0.0353 (6)
N5B 0.1697 (2) 0.80906 (14) 0.78469 (13) 0.0331 (5)
C1B 0.0493 (2) 0.46984 (16) 0.69011 (14) 0.0272 (5)
C2B −0.0251 (2) 0.47096 (17) 0.78086 (15) 0.0291 (6)
C3B −0.0359 (2) 0.58338 (17) 0.86952 (14) 0.0282 (5)
C4B 0.0267 (2) 0.69546 (17) 0.87299 (15) 0.0289 (5)
C5B 0.1009 (2) 0.69054 (16) 0.78195 (14) 0.0268 (5)
C6B 0.1133 (2) 0.58021 (16) 0.68980 (15) 0.0273 (5)
C11B 0.0569 (2) 0.34589 (17) 0.59463 (16) 0.0312 (6)
O12A 0.36207 (19) 0.66095 (12) 0.49243 (11) 0.0372 (4)
O13A 0.5239 (2) 0.85805 (12) 0.37886 (12) 0.0423 (5)
O14A 0.42998 (17) 0.89974 (12) 0.54337 (11) 0.0365 (4)
N1A 0.3546 (2) 0.28647 (14) 0.26491 (13) 0.0311 (5)
C2A 0.3735 (2) 0.41030 (16) 0.33443 (15) 0.0293 (6)
C3A 0.4425 (2) 0.47577 (16) 0.28182 (14) 0.0259 (5)
C4A 0.5334 (2) 0.39011 (17) 0.08035 (15) 0.0298 (6)
C5A 0.5337 (3) 0.28088 (18) −0.01547 (16) 0.0369 (7)
C6A 0.4707 (3) 0.16552 (18) −0.02214 (17) 0.0397 (7)
C7A 0.4090 (3) 0.15632 (17) 0.06754 (16) 0.0351 (6)
C8A 0.4094 (2) 0.26675 (16) 0.16438 (15) 0.0280 (6)
C9A 0.4681 (2) 0.38401 (15) 0.17227 (14) 0.0247 (5)
C11A 0.4720 (2) 0.60721 (16) 0.32128 (15) 0.0273 (5)
C12A 0.4337 (2) 0.69302 (16) 0.41764 (15) 0.0281 (5)
C13A 0.4624 (2) 0.82503 (17) 0.45126 (15) 0.0309 (6)
S2C 0.13671 (7) 0.02349 (4) 0.35794 (4) 0.0359 (2)
O2C 0.16071 (19) 0.14384 (12) 0.35128 (11) 0.0422 (5)
C1C −0.0974 (3) −0.0384 (2) 0.3210 (2) 0.0547 (9)
C3C 0.2017 (4) −0.0805 (2) 0.2321 (2) 0.0615 (9)
H2B −0.06770 0.39570 0.78180 0.0350*
H4B 0.01890 0.77200 0.93490 0.0350*
H6B 0.16420 0.58030 0.62820 0.0330*
H11B 0.130 (3) 0.2799 (17) 0.4585 (17) 0.0580*
H1A 0.308 (3) 0.2298 (16) 0.2818 (16) 0.0370*
H2A 0.34380 0.44630 0.40820 0.0350*
H4A 0.57650 0.46790 0.08410 0.0360*
H5A 0.57740 0.28390 −0.07810 0.0440*
H6A 0.47050 0.09200 −0.08990 0.0480*
H7A 0.36810 0.07810 0.06340 0.0420*
H11A 0.52400 0.63630 0.27430 0.0330*
H12A 0.353 (3) 0.7300 (17) 0.5506 (16) 0.0560*
H13A 0.540 (3) 0.9407 (15) 0.4071 (19) 0.0630*
D11C −0.14460 −0.04780 0.24570 0.0820*
D12C −0.15770 0.01790 0.37790 0.0820*
D13C −0.11950 −0.11940 0.31880 0.0820*
D31C 0.13170 −0.08140 0.16570 0.0920*
D32C 0.17950 −0.16400 0.22480 0.0920*
D33C 0.32990 −0.05370 0.23610 0.0920*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O11B 0.0554 (9) 0.0241 (7) 0.0344 (8) 0.0102 (6) 0.0154 (6) 0.0102 (6)
O12B 0.0661 (10) 0.0244 (8) 0.0504 (9) 0.0104 (7) 0.0179 (7) 0.0190 (7)
O31B 0.0418 (8) 0.0501 (9) 0.0519 (9) 0.0064 (7) 0.0145 (6) 0.0342 (7)
O32B 0.0582 (10) 0.0481 (10) 0.0336 (8) 0.0091 (7) 0.0151 (7) 0.0143 (7)
O51B 0.0814 (11) 0.0227 (8) 0.0397 (8) 0.0078 (7) 0.0175 (7) 0.0080 (6)
O52B 0.0587 (9) 0.0350 (8) 0.0480 (9) 0.0107 (7) 0.0234 (7) 0.0240 (7)
N3B 0.0309 (9) 0.0450 (11) 0.0361 (9) 0.0098 (7) 0.0075 (7) 0.0235 (8)
N5B 0.0404 (9) 0.0248 (9) 0.0323 (9) 0.0047 (7) 0.0051 (7) 0.0128 (7)
C1B 0.0256 (9) 0.0259 (10) 0.0301 (9) 0.0068 (7) 0.0024 (7) 0.0135 (8)
C2B 0.0256 (9) 0.0266 (10) 0.0362 (10) 0.0019 (7) 0.0006 (7) 0.0179 (8)
C3B 0.0240 (9) 0.0338 (10) 0.0274 (9) 0.0039 (7) 0.0024 (7) 0.0161 (8)
C4B 0.0288 (9) 0.0285 (10) 0.0254 (9) 0.0068 (7) 0.0013 (7) 0.0099 (7)
C5B 0.0279 (9) 0.0227 (9) 0.0292 (9) 0.0039 (7) 0.0012 (7) 0.0131 (7)
C6B 0.0266 (9) 0.0278 (10) 0.0280 (9) 0.0066 (7) 0.0036 (7) 0.0137 (7)
C11B 0.0314 (10) 0.0263 (10) 0.0352 (10) 0.0071 (7) 0.0032 (8) 0.0144 (8)
O12A 0.0537 (9) 0.0254 (7) 0.0322 (7) 0.0090 (6) 0.0146 (6) 0.0118 (6)
O13A 0.0594 (9) 0.0207 (7) 0.0456 (8) 0.0053 (6) 0.0244 (7) 0.0124 (6)
O14A 0.0424 (8) 0.0231 (7) 0.0390 (8) 0.0053 (6) 0.0160 (6) 0.0091 (6)
N1A 0.0373 (9) 0.0255 (9) 0.0350 (9) 0.0069 (7) 0.0112 (7) 0.0170 (7)
C2A 0.0317 (10) 0.0265 (10) 0.0295 (10) 0.0083 (7) 0.0075 (7) 0.0121 (8)
C3A 0.0245 (9) 0.0241 (9) 0.0271 (9) 0.0057 (7) 0.0036 (7) 0.0106 (7)
C4A 0.0287 (9) 0.0263 (10) 0.0353 (10) 0.0052 (7) 0.0091 (7) 0.0149 (8)
C5A 0.0392 (11) 0.0383 (12) 0.0359 (11) 0.0114 (9) 0.0176 (8) 0.0166 (9)
C6A 0.0452 (12) 0.0289 (11) 0.0378 (11) 0.0109 (9) 0.0148 (9) 0.0074 (8)
C7A 0.0388 (11) 0.0218 (10) 0.0410 (11) 0.0051 (8) 0.0094 (8) 0.0116 (8)
C8A 0.0263 (9) 0.0275 (10) 0.0315 (10) 0.0074 (7) 0.0062 (7) 0.0145 (8)
C9A 0.0206 (8) 0.0221 (9) 0.0302 (9) 0.0053 (7) 0.0036 (7) 0.0115 (7)
C11A 0.0249 (9) 0.0242 (9) 0.0316 (9) 0.0032 (7) 0.0051 (7) 0.0128 (7)
C12A 0.0272 (9) 0.0241 (9) 0.0312 (9) 0.0031 (7) 0.0041 (7) 0.0125 (8)
C13A 0.0265 (9) 0.0260 (10) 0.0353 (10) 0.0021 (7) 0.0064 (7) 0.0111 (8)
S2C 0.0396 (3) 0.0279 (3) 0.0398 (3) 0.0052 (2) 0.0107 (2) 0.0155 (2)
O2C 0.0567 (9) 0.0236 (7) 0.0450 (8) 0.0049 (6) 0.0255 (7) 0.0127 (6)
C1C 0.0390 (12) 0.0443 (14) 0.0970 (19) 0.0062 (10) 0.0194 (12) 0.0464 (14)
C3C 0.0669 (16) 0.0361 (14) 0.0623 (15) 0.0159 (11) 0.0213 (12) 0.0036 (11)

Geometric parameters (Å, º)

S2C—C3C 1.770 (3) C2B—H2B 0.9500
S2C—C1C 1.771 (2) C4B—H4B 0.9500
S2C—O2C 1.5177 (17) C6B—H6B 0.9500
O11B—C11B 1.320 (2) C2A—C3A 1.382 (3)
O12B—C11B 1.209 (3) C3A—C11A 1.439 (3)
O31B—N3B 1.228 (3) C3A—C9A 1.447 (2)
O32B—N3B 1.225 (2) C4A—C9A 1.405 (3)
O51B—N5B 1.225 (2) C4A—C5A 1.380 (3)
O52B—N5B 1.224 (2) C5A—C6A 1.402 (3)
O11B—H11B 0.88 (2) C6A—C7A 1.381 (3)
O12A—C12A 1.371 (2) C7A—C8A 1.394 (3)
O13A—C13A 1.316 (3) C8A—C9A 1.411 (3)
O14A—C13A 1.238 (2) C11A—C12A 1.343 (3)
O12A—H12A 0.88 (2) C12A—C13A 1.460 (3)
O13A—H13A 0.90 (2) C2A—H2A 0.9500
N3B—C3B 1.472 (2) C4A—H4A 0.9500
N5B—C5B 1.472 (3) C5A—H5A 0.9500
N1A—C8A 1.378 (2) C6A—H6A 0.9500
N1A—C2A 1.362 (3) C7A—H7A 0.9500
N1A—H1A 0.87 (2) C11A—H11A 0.9500
C1B—C6B 1.388 (3) C1C—D11C 0.9800
C1B—C2B 1.391 (2) C1C—D12C 0.9800
C1B—C11B 1.501 (3) C1C—D13C 0.9800
C2B—C3B 1.381 (3) C3C—D31C 0.9800
C3B—C4B 1.382 (3) C3C—D32C 0.9800
C4B—C5B 1.379 (2) C3C—D33C 0.9800
C5B—C6B 1.389 (3)
O2C—S2C—C1C 106.34 (11) C4A—C5A—C6A 121.28 (19)
O2C—S2C—C3C 103.33 (11) C5A—C6A—C7A 121.5 (2)
C1C—S2C—C3C 99.20 (13) C6A—C7A—C8A 117.1 (2)
C11B—O11B—H11B 109.6 (15) N1A—C8A—C9A 107.34 (16)
C12A—O12A—H12A 106.7 (15) N1A—C8A—C7A 130.1 (2)
C13A—O13A—H13A 110.2 (14) C7A—C8A—C9A 122.53 (17)
O32B—N3B—C3B 118.17 (19) C4A—C9A—C8A 118.90 (17)
O31B—N3B—C3B 117.62 (17) C3A—C9A—C8A 107.02 (16)
O31B—N3B—O32B 124.21 (18) C3A—C9A—C4A 134.08 (19)
O51B—N5B—C5B 117.86 (16) C3A—C11A—C12A 126.73 (18)
O52B—N5B—C5B 118.81 (16) O12A—C12A—C11A 121.18 (19)
O51B—N5B—O52B 123.33 (19) C11A—C12A—C13A 124.01 (18)
C2A—N1A—C8A 109.74 (17) O12A—C12A—C13A 114.81 (15)
C2A—N1A—H1A 123.5 (13) O14A—C13A—C12A 120.60 (18)
C8A—N1A—H1A 126.7 (13) O13A—C13A—C12A 116.25 (16)
C2B—C1B—C6B 120.32 (17) O13A—C13A—O14A 123.2 (2)
C6B—C1B—C11B 122.31 (16) C3A—C2A—H2A 125.00
C2B—C1B—C11B 117.38 (19) N1A—C2A—H2A 125.00
C1B—C2B—C3B 118.9 (2) C5A—C4A—H4A 121.00
N3B—C3B—C4B 118.50 (17) C9A—C4A—H4A 121.00
N3B—C3B—C2B 118.71 (19) C4A—C5A—H5A 119.00
C2B—C3B—C4B 122.79 (17) C6A—C5A—H5A 119.00
C3B—C4B—C5B 116.62 (18) C7A—C6A—H6A 119.00
C4B—C5B—C6B 123.1 (2) C5A—C6A—H6A 119.00
N5B—C5B—C6B 119.51 (16) C6A—C7A—H7A 121.00
N5B—C5B—C4B 117.36 (17) C8A—C7A—H7A 121.00
C1B—C6B—C5B 118.28 (17) C3A—C11A—H11A 117.00
O11B—C11B—O12B 124.40 (19) C12A—C11A—H11A 117.00
O12B—C11B—C1B 122.64 (17) S2C—C1C—D11C 109.00
O11B—C11B—C1B 112.96 (19) S2C—C1C—D12C 109.00
C1B—C2B—H2B 121.00 S2C—C1C—D13C 110.00
C3B—C2B—H2B 121.00 D11C—C1C—D12C 109.00
C3B—C4B—H4B 122.00 D11C—C1C—D13C 109.00
C5B—C4B—H4B 122.00 D12C—C1C—D13C 110.00
C5B—C6B—H6B 121.00 S2C—C3C—D31C 109.00
C1B—C6B—H6B 121.00 S2C—C3C—D32C 109.00
N1A—C2A—C3A 109.91 (16) S2C—C3C—D33C 109.00
C2A—C3A—C11A 128.34 (16) D31C—C3C—D32C 109.00
C9A—C3A—C11A 125.53 (17) D31C—C3C—D33C 109.00
C2A—C3A—C9A 105.98 (17) D32C—C3C—D33C 109.00
C5A—C4A—C9A 118.7 (2)
O31B—N3B—C3B—C2B −11.4 (2) C4B—C5B—C6B—C1B −0.6 (2)
O31B—N3B—C3B—C4B 169.03 (16) N1A—C2A—C3A—C9A −0.36 (19)
O32B—N3B—C3B—C2B 168.39 (17) N1A—C2A—C3A—C11A 175.38 (16)
O32B—N3B—C3B—C4B −11.2 (2) C2A—C3A—C9A—C4A −179.69 (18)
O51B—N5B—C5B—C4B −5.6 (2) C2A—C3A—C9A—C8A 0.95 (18)
O51B—N5B—C5B—C6B 174.61 (16) C11A—C3A—C9A—C4A 4.4 (3)
O52B—N5B—C5B—C4B 173.68 (16) C11A—C3A—C9A—C8A −174.95 (15)
O52B—N5B—C5B—C6B −6.2 (2) C2A—C3A—C11A—C12A −1.6 (3)
C2A—N1A—C8A—C9A 0.98 (19) C9A—C3A—C11A—C12A 173.37 (17)
C8A—N1A—C2A—C3A −0.4 (2) C9A—C4A—C5A—C6A −0.1 (3)
C2A—N1A—C8A—C7A −177.76 (19) C5A—C4A—C9A—C3A −177.79 (19)
C6B—C1B—C2B—C3B 0.8 (2) C5A—C4A—C9A—C8A 1.5 (2)
C2B—C1B—C11B—O11B 176.16 (15) C4A—C5A—C6A—C7A −1.3 (3)
C2B—C1B—C11B—O12B −3.8 (2) C5A—C6A—C7A—C8A 1.0 (3)
C6B—C1B—C11B—O11B −3.9 (2) C6A—C7A—C8A—N1A 179.11 (19)
C6B—C1B—C11B—O12B 176.13 (17) C6A—C7A—C8A—C9A 0.5 (3)
C11B—C1B—C6B—C5B −179.91 (15) N1A—C8A—C9A—C3A −1.18 (18)
C11B—C1B—C2B—C3B −179.31 (15) N1A—C8A—C9A—C4A 179.34 (15)
C2B—C1B—C6B—C5B 0.0 (2) C7A—C8A—C9A—C3A 177.68 (17)
C1B—C2B—C3B—N3B 179.41 (15) C7A—C8A—C9A—C4A −1.8 (3)
C1B—C2B—C3B—C4B −1.0 (3) C3A—C11A—C12A—O12A 1.4 (3)
C2B—C3B—C4B—C5B 0.5 (2) C3A—C11A—C12A—C13A −178.19 (16)
N3B—C3B—C4B—C5B −179.96 (15) O12A—C12A—C13A—O13A −177.22 (15)
C3B—C4B—C5B—N5B −179.48 (15) O12A—C12A—C13A—O14A 3.0 (2)
C3B—C4B—C5B—C6B 0.4 (2) C11A—C12A—C13A—O13A 2.4 (2)
N5B—C5B—C6B—C1B 179.23 (15) C11A—C12A—C13A—O14A −177.43 (16)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N1A—H1A···O2C 0.87 (2) 2.02 (2) 2.856 (2) 161 (2)
O11B—H11B···S2C 0.88 (2) 2.84 (2) 3.6757 (17) 160 (2)
O11B—H11B···O2C 0.88 (2) 1.72 (2) 2.591 (2) 174 (2)
O12A—H12A···O14A 0.88 (2) 2.15 (2) 2.672 (2) 118 (2)
O12A—H12A···O52B 0.88 (2) 2.20 (2) 2.951 (2) 144 (2)
O13A—H13A···O14Ai 0.90 (2) 1.75 (2) 2.644 (2) 178 (2)
C2A—H2A···O12A 0.95 2.34 2.876 (2) 115
C11A—H11A···O13A 0.95 2.45 2.794 (3) 101
C1C—D12C···O14Aii 0.98 2.56 3.472 (3) 155
C1C—D13C···O12Biii 0.98 2.52 3.372 (3) 145

Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x, −y+1, −z+1; (iii) −x, −y, −z+1.

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I, II. DOI: 10.1107/S1600536814019898/sj5421sup1.cif

e-70-00183-sup1.cif (66.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814019898/sj5421Isup2.hkl

e-70-00183-Isup2.hkl (295.8KB, hkl)

Structure factors: contains datablock(s) II. DOI: 10.1107/S1600536814019898/sj5421IIsup3.hkl

e-70-00183-IIsup3.hkl (211.2KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814019898/sj5421Isup4.cml

Supporting information file. DOI: 10.1107/S1600536814019898/sj5421IIsup5.cml

CCDC references: 1022646, 1022647

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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