The crystal structures of the co-crystal adducts of 3,5-dinitrobenzoic acid with 4-aminosalicylic acid (a 2:2:0.4-hydrate) and with 2-hydroxy-3-(1H-indol-3-yl)propenoic acid (a 1:1:1 d 6-DMSO solvate) show, respectively, polymeric and hexamolecular hydrogen-bonded and π–π-bonded structures
Keywords: co-crystal structures; carboxylic acid molecular adducts; 3,5-dinitrobenzoic acid; 4-aminosalicylic acid; 2-hydroxy-3-(1H-indol-3-yl)propenoic acid; hydrogen bonding; homodimers; heterodimers; π–π interactions.
Abstract
The structures of the co-crystalline adducts of 3,5-dinitrobenzoic acid (3,5-DNBA) with 4-aminosalicylic acid (PASA), the 1:1 partial hydrate, C7H4N2O6·C7H7NO3·0.2H2O, (I), and with 2-hydroxy-3-(1H-indol-3-yl)propenoic acid (HIPA), the 1:1:1 d 6-dimethyl sulfoxide solvate, C7H4N2O6·C11H9NO3·C2D6OS, (II), are reported. The crystal substructure of (I) comprises two centrosymmetric hydrogen-bonded R 2 2(8) homodimers, one with 3,5-DNBA, the other with PASA, and an R 2 2(8) 3,5-DNBA–PASA heterodimer. In the crystal, inter-unit amine N—H⋯O and water O—H⋯O hydrogen bonds generate a three-dimensional supramolecular structure. In (II), the asymmetric unit consists of the three constituent molecules, which form an essentially planar cyclic hydrogen-bonded heterotrimer unit [graph set R 3 2(17)] through carboxyl, hydroxy and amino groups. These units associate across a crystallographic inversion centre through the HIPA carboxylic acid group in an R 2 2(8) hydrogen-bonding association, giving a zero-dimensional structure lying parallel to (100). In both structures, π–π interactions are present [minimum ring-centroid separations = 3.6471 (18) Å in (I) and 3.5819 (10) Å in (II)].
Chemical context
3,5-Dinitrobenzoic acid (3,5-DNBA) has been an important acid for the formation of crystalline materials, which have allowed structural characterization using single crystal X-ray methods. Most commonly proton-transfer salts are formed with organic Lewis bases, e.g. with 1-H-pyrazole (Aakeröy et al., 2012 ▶) but salt–adducts are also known, e.g. 2-pyridyl-4′-pyridinium+–3,5-DNBA−–3,5-DNBA (1/1/1) (Chantrapromma et al., 2002 ▶). Although co-crystalline non-transfer molecular adducts with 3,5-DNBA are now relatively common, interest was stimulated with the original reporting of non-transfer adduct formation with 4-aminobenzoic acid to form a chiral 1:1 co-crystalline material (Etter & Frankenbach, 1989 ▶), which represented one of the earliest examples of designed crystal engineering, in that case with a view to producing non-linear optical materials. In the crystalline state, carboxylic acids usually form cyclic hydrogen-bonded dimers through head-to-head carboxyl O—H⋯O hydrogen bonds (Leiserowitz, 1976 ▶) [graph set
(8)]. This is the case with 3,5-DNBA (A), which when co-crystallized with certain aromatic acids, e.g. 4-(N,N-dimethylamino)benzoic acid (B), gives separate mixed AA and BB homodimer pairs (Sharma et al., 1993 ▶). Although uncommon with 3,5-DNBA, with other aromatic acid analogues, AB heterodimer formation appears more prevalent, e.g. the 1:1 adducts of 3,5-dinitrocinnamic acid with 4-(N,N-dimethylamino)benzoic acid and 2,4-dinitrocinnamic acid with 2,5-dimethoxycinnamic acid (Sharma et al., 1993 ▶). In both AA and BB structure types, π–π interactions are commonly involved in stabilization, usually accompanied by enhanced colour generation. Absence of dimer pairs in 3,5-DNBA adducts is usually the result of preferential hydrogen bonding with solvent molecules, such as is found in the structure of 3,5-DNBA–phenoxyacetic acid–water (2/1/1) (Lynch et al., 1991 ▶), in which a cyclic
(10) interaction is found, involving two 3,5-DNBA molecules and the water molecule. The title adducts C7H4N2O6·C7H7NO3·0.2H2O (I) and C7H4N2O6·C11H9NO3·C2D6OS (II) were prepared from the interaction of 3,5-DNBA with 4-aminosalicylic acid (PASA) and 2-hydroxy-3-(1H-indol-3-yl)propenoic acid (HIPA), respectively, and the structures are reported herein. With (II), the incorporation of C2D6OS resulted from recrystallization from d
6-dimethylsulfoxide.
Structural commentary
In the co-crystal of 3,5-DNBA with 4-aminosalicylic acid, (I) (Fig. 1 ▶), the asymmetric unit consists of two PASA molecules (A and B), two 3,5-DNBA molecules (C and D) and a partially occupied water molecule of solvation (O1W), with site occupancy = 0.4. However, what is most unusual in this structure is the presence of not four homodimers in the unit cell, but two homodimers (centrosymmetric PASA A–Ai and 3,5-DNBA C–Cii pairs), as well as two heterodimer B–D pairs (for symmetry codes, see Table 1 ▶). All dimers are formed through the common cyclic
(8) ring motif. Present in the PASA molecules are the expected intramolecular salicylic acid phenolic O—H⋯Ocarboxyl hydrogen bonds, also present in the parent acid (Montis & Hursthouse, 2012 ▶).
Figure 1.
Molecular conformation and atom-naming scheme for the two PABA molecules (A and B), the two 3,5-DNBA molecules (C and D) and the disordered water molecule (O1W) in the asymmetric unit of adduct (I), with displacement ellipsoids drawn at the 40% probability level. Inter-species hydrogen bonds are shown as dashed lines.
Table 1. Hydrogen-bond geometry (Å, °) for (I) .
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O11A—H11A⋯O12A i | 0.91 (3) | 1.78 (3) | 2.678 (3) | 175 (3) |
| O11B—H11B⋯O11D | 0.94 (3) | 1.74 (3) | 2.673 (3) | 175 (3) |
| O11C—H11C⋯O12C ii | 0.91 (3) | 1.73 (3) | 2.640 (3) | 177 (2) |
| O12D—H12D⋯O12B | 0.90 (3) | 1.71 (3) | 2.610 (3) | 176 (2) |
| N4B—H41B⋯O31C | 0.86 (3) | 2.58 (3) | 3.350 (4) | 150 (3) |
| N4B—H42B⋯O52D iii | 0.85 (2) | 2.44 (3) | 3.210 (4) | 151 (3) |
| O2A—H2A⋯O12A | 0.84 | 1.89 | 2.625 (3) | 145 |
| O2B—H2B⋯O12B | 0.84 | 1.85 | 2.587 (3) | 145 |
| O1W—H11W⋯O2B | 0.90 | 2.05 | 2.952 (6) | 179 |
| O1W—H12W⋯O32C iv | 0.93 | 2.08 | 3.005 (5) | 179 |
| C3B—H3B⋯O31C | 0.95 | 2.58 | 3.382 (3) | 142 |
| C4D—H4D⋯O32C v | 0.95 | 2.49 | 3.425 (3) | 170 |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
; (v)
.
In the ternary co-crystal of 3,5-DNBA (B) with 2-hydroxy-3-(1H-indol-3-yl)propenoic acid (A) and d
6-dimethylsulfoxide (C), (II) the three molecules inter-associate through carboxylic acid O—H⋯O and N—H⋯O hydrogen bonds, forming a cyclic
(17) heterotrimeric asymmetric unit (Fig. 2 ▶). This unit is essentially planar with a dihedral angle of 4.97 (7)° between the indole ring of A and the benzene ring of B. With the HIPA molecule there is a maximum deviation from the least-squares plane of the 15-atom molecule of 0.120 (2) Å (C6A). The planar conformation of the acid side chain in this molecule is maintained by the presence of delocalization extending from C2A of the ring to O14A of the carboxylic acid group [torsion angle C11A—C12A—C13A—O14A = −177.43 (16)°]. This is also found in the parent acid, which has the similar enol configuration as in (II) [corresponding torsion angle 170.0 (3)°] with an E orientation and in the crystal forms a centrosymmetric homodimer with an
(8) hydrogen-bond motif (Okabe & Adachi, 1998 ▶).
Figure 2.
Molecular conformation and atom-naming scheme for adduct (II), with displacement ellipsoids drawn at the 40% probability level. Inter-species hydrogen bonds are shown as dashed lines.
In the adducts (I) and (II), the 3,5-DNBA molecules are essentially planar with the exception of the C3-nitro groups of the C molecule in (I), and the B molecule in (II), where the defining C2—C3—N3—O32 torsion angles are 158.2 (3) and 168.39 (17)°, respectively. The overall torsion angle range for the remaining groups in both (I) and (II) is 170.8 (3)–179.2 (2)°. These minor deviations from planarity are consistent with conformational features of both polymorphs of the parent acid 3,5-DNBA (Prince et al., 1991 ▶) and in examples both of its salts (Aakeröy et al., 2012 ▶) and its adducts (Aakeröy et al., 2001 ▶; Jones et al., 2010 ▶; Chadwick et al., 2009 ▶).
Supramolecular features
In the supramolecular structure of (I), the carboxylic acid dimers are extended through inter-dimer or inter-heterodimer amine N—H⋯O and water O—H⋯O hydrogen bonds (Table 1 ▶), giving a three-dimensional framework structure (Fig. 3 ▶). Within the structure there are a number of inter-ring π–π associations [ring-centroid separations: A⋯C
vi, 3.7542 (16); A⋯C
vii, 3.6471 (16); B⋯D
viii, 3.6785 (14) Å] [symmetry codes: (vi) x + 1, y − 1, z; (vii) x, y − 1, z; (viii) −x + 1, −y + 1, −z]. The B⋯D heterodimers in the π–π association are not only related by inversion but are cyclically linked by the amine N4B—H⋯O52Diii hydrogen bond, forming an enlarged
(32) ring motif. This cyclic relationship with associated π–π bonding is also found in some aromatic homodimer carboxylic acid structures (Sharma et al., 1993 ▶). In (I), the disordered water molecule also provides a link between the B molecule [the phenolic O2B acceptor] and the C molecule [the nitro O32C
iv acceptor]. Also present in the structure are two very weak C—H⋯Onitro interactions [C3B—H⋯O31C 3.382 (3) and C4D—H⋯O32C
v 3.425 (3) Å; Table 1 ▶]. The H atoms of the N4A amine group have no acceptors with the PASA A homodimer unassociated in the overall structure except for the previously mentioned π–π ring interactions.
Figure 3.
A partial expansion in the three-dimensional hydrogen-bonded structure of the adduct (I) in the unit cell, viewed down a. Non-associative H atoms have been omitted. For symmetry codes, see Table 1 ▶.
In (II) the hydrogen-bonded heterotrimer units associate across a crystallographic inversion centre through the HIPA carboxylic acid group [O13A—H⋯O14A]i in a cyclic
(8) hydrogen-bonding association, giving a zero-dimensional heterohexamer structure which is essentially planar and lies parallel to (100) (Fig. 4 ▶). Only two very weak intermolecular d
6-DMSO methyl C—H⋯O interactions are present between these units interactions [C1C—D⋯O14A
ii 3.472 (3) and C1C—D⋯O12B
iii 3.372 (3) Å; Table 2 ▶]. In the structure, π–π interactions are also present between the benzene rings of the A and B
viii molecules] [minimum ring-centroid separation 3.5819 (10) Å; symmetry code: (viii) −x, −y + 2, −z + 1].
Figure 4.
The centrosymmetric hydrogen-bonded heterohexameric structure of the adduct (II) in the unit cell, viewed down a. For symmetry code (i), see Table 2 ▶.
Table 2. Hydrogen-bond geometry (Å, °) for (II) .
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1A—H1A⋯O2C | 0.87 (2) | 2.02 (2) | 2.856 (2) | 161 (2) |
| O11B—H11B⋯O2C | 0.88 (2) | 1.72 (2) | 2.591 (2) | 174 (2) |
| O12A—H12A⋯O14A | 0.88 (2) | 2.15 (2) | 2.672 (2) | 118 (2) |
| O12A—H12A⋯O52B | 0.88 (2) | 2.20 (2) | 2.951 (2) | 144 (2) |
| O13A—H13A⋯O14A i | 0.90 (2) | 1.75 (2) | 2.644 (2) | 178 (2) |
| C1C—D12C⋯O14A ii | 0.98 | 2.56 | 3.472 (3) | 155 |
| C1C—D13C⋯O12B iii | 0.98 | 2.52 | 3.372 (3) | 145 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Synthesis and crystallization
The title co-crystalline adducts (I) and (II) were prepared by dissolving equimolar quantities of 3,5-dinitrobenzoic acid and the respective acids 4-aminosalicylic acid [for (I)] or (1H-indol-3-yl)propenoic acid [for (II)] in ethanol and heating under reflux for 5 min after which room-temperature evaporation of the solutions gave for (I), yellow prisms and for (II), a red powder. This latter compound was dissolved in d 6-deuterated DMSO and solvent diffusion of water into this solution gave red prisms of (II). Specimens were cleaved from both prismatic crystals for the X-ray analyses.
Refinement details
Crystal data, data collection and structure refinement details are summarized in Table 3 ▶. Hydrogen atoms on all potentially interactive O—H and N—H groups in all molecular species were located by difference-Fourier methods and positional and displacement parameters were refined for all but those of the phenolic O2A and O2B groups and on the disordered water molecule O1W, with riding restraints [O—H bond length = 0.90 (2) Å and U iso(H) = 1.5U eq(O) or N—H = 0.88 (2) Å, with U iso(H) = 1.2U eq(N)]. The phenolic and water H atoms were set invariant with U iso(H) = 1.2U eq(O). Other H atoms were included in the refinement at calculated positions [C—H (aromatic) = 0.95 or (methylene) 0.99 Å] , with U iso(H) = 1.2U eq(C), using a riding-model approximation. The site-occupancy factor for the disordered water molecule of solvation was determined as 0.403 (4) [for the (2:2) 3,5-DNBA:PASA pair in the asymmetric unit] and was subsequently fixed as 0.40. In the structure of (I), the relatively large maximum residual electron density (0.835 e Å−3) was located 0.80 Å from H6B.
Table 3. Experimental details.
| (I) | (II) | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C7H4N2O6·C7H7NO3·0.2H2O | C7H4N2O6·C11H9NO3·C2D6OS |
| M r | 368.86 | 499.49 |
| Crystal system, space group | Triclinic, P
|
Triclinic, P
|
| Temperature (K) | 200 | 200 |
| a, b, c (Å) | 7.0717 (5), 7.5974 (4), 28.7175 (19) | 7.6488 (6), 12.3552 (10), 13.3768 (10) |
| α, β, γ (°) | 87.926 (5), 86.498 (6), 87.584 (5) | 116.833 (8), 96.274 (6), 97.626 (7) |
| V (Å3) | 1537.77 (17) | 1097.40 (18) |
| Z | 4 | 2 |
| Radiation type | Mo Kα | Mo Kα |
| μ (mm−1) | 0.14 | 0.21 |
| Crystal size (mm) | 0.35 × 0.35 × 0.30 | 0.45 × 0.40 × 0.32 |
| Data collection | ||
| Diffractometer | Oxford Diffraction Gemini-S CCD detector | Oxford Diffraction Gemini-S CCD detector |
| Absorption correction | Multi-scan (CrysAlis PRO; Agilent, 2013 ▶) | Multi-scan (CrysAlis PRO; Agilent, 2013 ▶) |
| T min, T max | 0.966, 0.990 | 0.94, 0.98 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 10302, 6044, 4158 | 7457, 4310, 3490 |
| R int | 0.027 | 0.023 |
| (sin θ/λ)max (Å−1) | 0.617 | 0.617 |
| Refinement | ||
| R[F 2 > 2σ(F 2)], wR(F 2), S | 0.056, 0.149, 1.01 | 0.040, 0.097, 1.02 |
| No. of reflections | 6044 | 4310 |
| No. of parameters | 502 | 319 |
| No. of restraints | 8 | 4 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.86, −0.28 | 0.26, −0.25 |
Supplementary Material
Crystal structure: contains datablock(s) global, I, II. DOI: 10.1107/S1600536814019898/sj5421sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814019898/sj5421Isup2.hkl
Structure factors: contains datablock(s) II. DOI: 10.1107/S1600536814019898/sj5421IIsup3.hkl
Supporting information file. DOI: 10.1107/S1600536814019898/sj5421Isup4.cml
Supporting information file. DOI: 10.1107/S1600536814019898/sj5421IIsup5.cml
Additional supporting information: crystallographic information; 3D view; checkCIF report
Acknowledgments
The authors thank the Faculty of Science and Engineering, Queensland University of Technology for financial support.
supplementary crystallographic information
Crystal data
| C7H4N2O6·C11H9NO3·C2D6OS | Z = 2 |
| Mr = 499.49 | F(000) = 512 |
| Triclinic, P1 | Dx = 1.511 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 7.6488 (6) Å | Cell parameters from 2343 reflections |
| b = 12.3552 (10) Å | θ = 3.3–28.4° |
| c = 13.3768 (10) Å | µ = 0.21 mm−1 |
| α = 116.833 (8)° | T = 200 K |
| β = 96.274 (6)° | Block, red |
| γ = 97.626 (7)° | 0.45 × 0.40 × 0.32 mm |
| V = 1097.40 (18) Å3 |
Data collection
| Oxford Diffraction Gemini-S CCD detector diffractometer | 4310 independent reflections |
| Radiation source: Enhance (Mo) X-ray source | 3490 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.023 |
| Detector resolution: 16.077 pixels mm-1 | θmax = 26.0°, θmin = 3.3° |
| ω scans | h = −9→9 |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013) | k = −15→15 |
| Tmin = 0.94, Tmax = 0.98 | l = −16→16 |
| 7457 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.097 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.02 | w = 1/[σ2(Fo2) + (0.0394P)2 + 0.3315P] where P = (Fo2 + 2Fc2)/3 |
| 4310 reflections | (Δ/σ)max < 0.001 |
| 319 parameters | Δρmax = 0.26 e Å−3 |
| 4 restraints | Δρmin = −0.25 e Å−3 |
Special details
| Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O11B | 0.11950 (19) | 0.35376 (12) | 0.50949 (11) | 0.0386 (5) | |
| O12B | 0.0099 (2) | 0.24989 (12) | 0.59702 (12) | 0.0458 (5) | |
| O31B | −0.19578 (19) | 0.48461 (14) | 0.95269 (12) | 0.0438 (5) | |
| O32B | −0.0994 (2) | 0.68345 (14) | 1.05107 (12) | 0.0483 (5) | |
| O51B | 0.1446 (2) | 0.90405 (13) | 0.86272 (12) | 0.0504 (5) | |
| O52B | 0.2503 (2) | 0.80830 (13) | 0.71029 (12) | 0.0443 (5) | |
| N3B | −0.1163 (2) | 0.58414 (16) | 0.96484 (14) | 0.0353 (6) | |
| N5B | 0.1697 (2) | 0.80906 (14) | 0.78469 (13) | 0.0331 (5) | |
| C1B | 0.0493 (2) | 0.46984 (16) | 0.69011 (14) | 0.0272 (5) | |
| C2B | −0.0251 (2) | 0.47096 (17) | 0.78086 (15) | 0.0291 (6) | |
| C3B | −0.0359 (2) | 0.58338 (17) | 0.86952 (14) | 0.0282 (5) | |
| C4B | 0.0267 (2) | 0.69546 (17) | 0.87299 (15) | 0.0289 (5) | |
| C5B | 0.1009 (2) | 0.69054 (16) | 0.78195 (14) | 0.0268 (5) | |
| C6B | 0.1133 (2) | 0.58021 (16) | 0.68980 (15) | 0.0273 (5) | |
| C11B | 0.0569 (2) | 0.34589 (17) | 0.59463 (16) | 0.0312 (6) | |
| O12A | 0.36207 (19) | 0.66095 (12) | 0.49243 (11) | 0.0372 (4) | |
| O13A | 0.5239 (2) | 0.85805 (12) | 0.37886 (12) | 0.0423 (5) | |
| O14A | 0.42998 (17) | 0.89974 (12) | 0.54337 (11) | 0.0365 (4) | |
| N1A | 0.3546 (2) | 0.28647 (14) | 0.26491 (13) | 0.0311 (5) | |
| C2A | 0.3735 (2) | 0.41030 (16) | 0.33443 (15) | 0.0293 (6) | |
| C3A | 0.4425 (2) | 0.47577 (16) | 0.28182 (14) | 0.0259 (5) | |
| C4A | 0.5334 (2) | 0.39011 (17) | 0.08035 (15) | 0.0298 (6) | |
| C5A | 0.5337 (3) | 0.28088 (18) | −0.01547 (16) | 0.0369 (7) | |
| C6A | 0.4707 (3) | 0.16552 (18) | −0.02214 (17) | 0.0397 (7) | |
| C7A | 0.4090 (3) | 0.15632 (17) | 0.06754 (16) | 0.0351 (6) | |
| C8A | 0.4094 (2) | 0.26675 (16) | 0.16438 (15) | 0.0280 (6) | |
| C9A | 0.4681 (2) | 0.38401 (15) | 0.17227 (14) | 0.0247 (5) | |
| C11A | 0.4720 (2) | 0.60721 (16) | 0.32128 (15) | 0.0273 (5) | |
| C12A | 0.4337 (2) | 0.69302 (16) | 0.41764 (15) | 0.0281 (5) | |
| C13A | 0.4624 (2) | 0.82503 (17) | 0.45126 (15) | 0.0309 (6) | |
| S2C | 0.13671 (7) | 0.02349 (4) | 0.35794 (4) | 0.0359 (2) | |
| O2C | 0.16071 (19) | 0.14384 (12) | 0.35128 (11) | 0.0422 (5) | |
| C1C | −0.0974 (3) | −0.0384 (2) | 0.3210 (2) | 0.0547 (9) | |
| C3C | 0.2017 (4) | −0.0805 (2) | 0.2321 (2) | 0.0615 (9) | |
| H2B | −0.06770 | 0.39570 | 0.78180 | 0.0350* | |
| H4B | 0.01890 | 0.77200 | 0.93490 | 0.0350* | |
| H6B | 0.16420 | 0.58030 | 0.62820 | 0.0330* | |
| H11B | 0.130 (3) | 0.2799 (17) | 0.4585 (17) | 0.0580* | |
| H1A | 0.308 (3) | 0.2298 (16) | 0.2818 (16) | 0.0370* | |
| H2A | 0.34380 | 0.44630 | 0.40820 | 0.0350* | |
| H4A | 0.57650 | 0.46790 | 0.08410 | 0.0360* | |
| H5A | 0.57740 | 0.28390 | −0.07810 | 0.0440* | |
| H6A | 0.47050 | 0.09200 | −0.08990 | 0.0480* | |
| H7A | 0.36810 | 0.07810 | 0.06340 | 0.0420* | |
| H11A | 0.52400 | 0.63630 | 0.27430 | 0.0330* | |
| H12A | 0.353 (3) | 0.7300 (17) | 0.5506 (16) | 0.0560* | |
| H13A | 0.540 (3) | 0.9407 (15) | 0.4071 (19) | 0.0630* | |
| D11C | −0.14460 | −0.04780 | 0.24570 | 0.0820* | |
| D12C | −0.15770 | 0.01790 | 0.37790 | 0.0820* | |
| D13C | −0.11950 | −0.11940 | 0.31880 | 0.0820* | |
| D31C | 0.13170 | −0.08140 | 0.16570 | 0.0920* | |
| D32C | 0.17950 | −0.16400 | 0.22480 | 0.0920* | |
| D33C | 0.32990 | −0.05370 | 0.23610 | 0.0920* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O11B | 0.0554 (9) | 0.0241 (7) | 0.0344 (8) | 0.0102 (6) | 0.0154 (6) | 0.0102 (6) |
| O12B | 0.0661 (10) | 0.0244 (8) | 0.0504 (9) | 0.0104 (7) | 0.0179 (7) | 0.0190 (7) |
| O31B | 0.0418 (8) | 0.0501 (9) | 0.0519 (9) | 0.0064 (7) | 0.0145 (6) | 0.0342 (7) |
| O32B | 0.0582 (10) | 0.0481 (10) | 0.0336 (8) | 0.0091 (7) | 0.0151 (7) | 0.0143 (7) |
| O51B | 0.0814 (11) | 0.0227 (8) | 0.0397 (8) | 0.0078 (7) | 0.0175 (7) | 0.0080 (6) |
| O52B | 0.0587 (9) | 0.0350 (8) | 0.0480 (9) | 0.0107 (7) | 0.0234 (7) | 0.0240 (7) |
| N3B | 0.0309 (9) | 0.0450 (11) | 0.0361 (9) | 0.0098 (7) | 0.0075 (7) | 0.0235 (8) |
| N5B | 0.0404 (9) | 0.0248 (9) | 0.0323 (9) | 0.0047 (7) | 0.0051 (7) | 0.0128 (7) |
| C1B | 0.0256 (9) | 0.0259 (10) | 0.0301 (9) | 0.0068 (7) | 0.0024 (7) | 0.0135 (8) |
| C2B | 0.0256 (9) | 0.0266 (10) | 0.0362 (10) | 0.0019 (7) | 0.0006 (7) | 0.0179 (8) |
| C3B | 0.0240 (9) | 0.0338 (10) | 0.0274 (9) | 0.0039 (7) | 0.0024 (7) | 0.0161 (8) |
| C4B | 0.0288 (9) | 0.0285 (10) | 0.0254 (9) | 0.0068 (7) | 0.0013 (7) | 0.0099 (7) |
| C5B | 0.0279 (9) | 0.0227 (9) | 0.0292 (9) | 0.0039 (7) | 0.0012 (7) | 0.0131 (7) |
| C6B | 0.0266 (9) | 0.0278 (10) | 0.0280 (9) | 0.0066 (7) | 0.0036 (7) | 0.0137 (7) |
| C11B | 0.0314 (10) | 0.0263 (10) | 0.0352 (10) | 0.0071 (7) | 0.0032 (8) | 0.0144 (8) |
| O12A | 0.0537 (9) | 0.0254 (7) | 0.0322 (7) | 0.0090 (6) | 0.0146 (6) | 0.0118 (6) |
| O13A | 0.0594 (9) | 0.0207 (7) | 0.0456 (8) | 0.0053 (6) | 0.0244 (7) | 0.0124 (6) |
| O14A | 0.0424 (8) | 0.0231 (7) | 0.0390 (8) | 0.0053 (6) | 0.0160 (6) | 0.0091 (6) |
| N1A | 0.0373 (9) | 0.0255 (9) | 0.0350 (9) | 0.0069 (7) | 0.0112 (7) | 0.0170 (7) |
| C2A | 0.0317 (10) | 0.0265 (10) | 0.0295 (10) | 0.0083 (7) | 0.0075 (7) | 0.0121 (8) |
| C3A | 0.0245 (9) | 0.0241 (9) | 0.0271 (9) | 0.0057 (7) | 0.0036 (7) | 0.0106 (7) |
| C4A | 0.0287 (9) | 0.0263 (10) | 0.0353 (10) | 0.0052 (7) | 0.0091 (7) | 0.0149 (8) |
| C5A | 0.0392 (11) | 0.0383 (12) | 0.0359 (11) | 0.0114 (9) | 0.0176 (8) | 0.0166 (9) |
| C6A | 0.0452 (12) | 0.0289 (11) | 0.0378 (11) | 0.0109 (9) | 0.0148 (9) | 0.0074 (8) |
| C7A | 0.0388 (11) | 0.0218 (10) | 0.0410 (11) | 0.0051 (8) | 0.0094 (8) | 0.0116 (8) |
| C8A | 0.0263 (9) | 0.0275 (10) | 0.0315 (10) | 0.0074 (7) | 0.0062 (7) | 0.0145 (8) |
| C9A | 0.0206 (8) | 0.0221 (9) | 0.0302 (9) | 0.0053 (7) | 0.0036 (7) | 0.0115 (7) |
| C11A | 0.0249 (9) | 0.0242 (9) | 0.0316 (9) | 0.0032 (7) | 0.0051 (7) | 0.0128 (7) |
| C12A | 0.0272 (9) | 0.0241 (9) | 0.0312 (9) | 0.0031 (7) | 0.0041 (7) | 0.0125 (8) |
| C13A | 0.0265 (9) | 0.0260 (10) | 0.0353 (10) | 0.0021 (7) | 0.0064 (7) | 0.0111 (8) |
| S2C | 0.0396 (3) | 0.0279 (3) | 0.0398 (3) | 0.0052 (2) | 0.0107 (2) | 0.0155 (2) |
| O2C | 0.0567 (9) | 0.0236 (7) | 0.0450 (8) | 0.0049 (6) | 0.0255 (7) | 0.0127 (6) |
| C1C | 0.0390 (12) | 0.0443 (14) | 0.0970 (19) | 0.0062 (10) | 0.0194 (12) | 0.0464 (14) |
| C3C | 0.0669 (16) | 0.0361 (14) | 0.0623 (15) | 0.0159 (11) | 0.0213 (12) | 0.0036 (11) |
Geometric parameters (Å, º)
| S2C—C3C | 1.770 (3) | C2B—H2B | 0.9500 |
| S2C—C1C | 1.771 (2) | C4B—H4B | 0.9500 |
| S2C—O2C | 1.5177 (17) | C6B—H6B | 0.9500 |
| O11B—C11B | 1.320 (2) | C2A—C3A | 1.382 (3) |
| O12B—C11B | 1.209 (3) | C3A—C11A | 1.439 (3) |
| O31B—N3B | 1.228 (3) | C3A—C9A | 1.447 (2) |
| O32B—N3B | 1.225 (2) | C4A—C9A | 1.405 (3) |
| O51B—N5B | 1.225 (2) | C4A—C5A | 1.380 (3) |
| O52B—N5B | 1.224 (2) | C5A—C6A | 1.402 (3) |
| O11B—H11B | 0.88 (2) | C6A—C7A | 1.381 (3) |
| O12A—C12A | 1.371 (2) | C7A—C8A | 1.394 (3) |
| O13A—C13A | 1.316 (3) | C8A—C9A | 1.411 (3) |
| O14A—C13A | 1.238 (2) | C11A—C12A | 1.343 (3) |
| O12A—H12A | 0.88 (2) | C12A—C13A | 1.460 (3) |
| O13A—H13A | 0.90 (2) | C2A—H2A | 0.9500 |
| N3B—C3B | 1.472 (2) | C4A—H4A | 0.9500 |
| N5B—C5B | 1.472 (3) | C5A—H5A | 0.9500 |
| N1A—C8A | 1.378 (2) | C6A—H6A | 0.9500 |
| N1A—C2A | 1.362 (3) | C7A—H7A | 0.9500 |
| N1A—H1A | 0.87 (2) | C11A—H11A | 0.9500 |
| C1B—C6B | 1.388 (3) | C1C—D11C | 0.9800 |
| C1B—C2B | 1.391 (2) | C1C—D12C | 0.9800 |
| C1B—C11B | 1.501 (3) | C1C—D13C | 0.9800 |
| C2B—C3B | 1.381 (3) | C3C—D31C | 0.9800 |
| C3B—C4B | 1.382 (3) | C3C—D32C | 0.9800 |
| C4B—C5B | 1.379 (2) | C3C—D33C | 0.9800 |
| C5B—C6B | 1.389 (3) | ||
| O2C—S2C—C1C | 106.34 (11) | C4A—C5A—C6A | 121.28 (19) |
| O2C—S2C—C3C | 103.33 (11) | C5A—C6A—C7A | 121.5 (2) |
| C1C—S2C—C3C | 99.20 (13) | C6A—C7A—C8A | 117.1 (2) |
| C11B—O11B—H11B | 109.6 (15) | N1A—C8A—C9A | 107.34 (16) |
| C12A—O12A—H12A | 106.7 (15) | N1A—C8A—C7A | 130.1 (2) |
| C13A—O13A—H13A | 110.2 (14) | C7A—C8A—C9A | 122.53 (17) |
| O32B—N3B—C3B | 118.17 (19) | C4A—C9A—C8A | 118.90 (17) |
| O31B—N3B—C3B | 117.62 (17) | C3A—C9A—C8A | 107.02 (16) |
| O31B—N3B—O32B | 124.21 (18) | C3A—C9A—C4A | 134.08 (19) |
| O51B—N5B—C5B | 117.86 (16) | C3A—C11A—C12A | 126.73 (18) |
| O52B—N5B—C5B | 118.81 (16) | O12A—C12A—C11A | 121.18 (19) |
| O51B—N5B—O52B | 123.33 (19) | C11A—C12A—C13A | 124.01 (18) |
| C2A—N1A—C8A | 109.74 (17) | O12A—C12A—C13A | 114.81 (15) |
| C2A—N1A—H1A | 123.5 (13) | O14A—C13A—C12A | 120.60 (18) |
| C8A—N1A—H1A | 126.7 (13) | O13A—C13A—C12A | 116.25 (16) |
| C2B—C1B—C6B | 120.32 (17) | O13A—C13A—O14A | 123.2 (2) |
| C6B—C1B—C11B | 122.31 (16) | C3A—C2A—H2A | 125.00 |
| C2B—C1B—C11B | 117.38 (19) | N1A—C2A—H2A | 125.00 |
| C1B—C2B—C3B | 118.9 (2) | C5A—C4A—H4A | 121.00 |
| N3B—C3B—C4B | 118.50 (17) | C9A—C4A—H4A | 121.00 |
| N3B—C3B—C2B | 118.71 (19) | C4A—C5A—H5A | 119.00 |
| C2B—C3B—C4B | 122.79 (17) | C6A—C5A—H5A | 119.00 |
| C3B—C4B—C5B | 116.62 (18) | C7A—C6A—H6A | 119.00 |
| C4B—C5B—C6B | 123.1 (2) | C5A—C6A—H6A | 119.00 |
| N5B—C5B—C6B | 119.51 (16) | C6A—C7A—H7A | 121.00 |
| N5B—C5B—C4B | 117.36 (17) | C8A—C7A—H7A | 121.00 |
| C1B—C6B—C5B | 118.28 (17) | C3A—C11A—H11A | 117.00 |
| O11B—C11B—O12B | 124.40 (19) | C12A—C11A—H11A | 117.00 |
| O12B—C11B—C1B | 122.64 (17) | S2C—C1C—D11C | 109.00 |
| O11B—C11B—C1B | 112.96 (19) | S2C—C1C—D12C | 109.00 |
| C1B—C2B—H2B | 121.00 | S2C—C1C—D13C | 110.00 |
| C3B—C2B—H2B | 121.00 | D11C—C1C—D12C | 109.00 |
| C3B—C4B—H4B | 122.00 | D11C—C1C—D13C | 109.00 |
| C5B—C4B—H4B | 122.00 | D12C—C1C—D13C | 110.00 |
| C5B—C6B—H6B | 121.00 | S2C—C3C—D31C | 109.00 |
| C1B—C6B—H6B | 121.00 | S2C—C3C—D32C | 109.00 |
| N1A—C2A—C3A | 109.91 (16) | S2C—C3C—D33C | 109.00 |
| C2A—C3A—C11A | 128.34 (16) | D31C—C3C—D32C | 109.00 |
| C9A—C3A—C11A | 125.53 (17) | D31C—C3C—D33C | 109.00 |
| C2A—C3A—C9A | 105.98 (17) | D32C—C3C—D33C | 109.00 |
| C5A—C4A—C9A | 118.7 (2) | ||
| O31B—N3B—C3B—C2B | −11.4 (2) | C4B—C5B—C6B—C1B | −0.6 (2) |
| O31B—N3B—C3B—C4B | 169.03 (16) | N1A—C2A—C3A—C9A | −0.36 (19) |
| O32B—N3B—C3B—C2B | 168.39 (17) | N1A—C2A—C3A—C11A | 175.38 (16) |
| O32B—N3B—C3B—C4B | −11.2 (2) | C2A—C3A—C9A—C4A | −179.69 (18) |
| O51B—N5B—C5B—C4B | −5.6 (2) | C2A—C3A—C9A—C8A | 0.95 (18) |
| O51B—N5B—C5B—C6B | 174.61 (16) | C11A—C3A—C9A—C4A | 4.4 (3) |
| O52B—N5B—C5B—C4B | 173.68 (16) | C11A—C3A—C9A—C8A | −174.95 (15) |
| O52B—N5B—C5B—C6B | −6.2 (2) | C2A—C3A—C11A—C12A | −1.6 (3) |
| C2A—N1A—C8A—C9A | 0.98 (19) | C9A—C3A—C11A—C12A | 173.37 (17) |
| C8A—N1A—C2A—C3A | −0.4 (2) | C9A—C4A—C5A—C6A | −0.1 (3) |
| C2A—N1A—C8A—C7A | −177.76 (19) | C5A—C4A—C9A—C3A | −177.79 (19) |
| C6B—C1B—C2B—C3B | 0.8 (2) | C5A—C4A—C9A—C8A | 1.5 (2) |
| C2B—C1B—C11B—O11B | 176.16 (15) | C4A—C5A—C6A—C7A | −1.3 (3) |
| C2B—C1B—C11B—O12B | −3.8 (2) | C5A—C6A—C7A—C8A | 1.0 (3) |
| C6B—C1B—C11B—O11B | −3.9 (2) | C6A—C7A—C8A—N1A | 179.11 (19) |
| C6B—C1B—C11B—O12B | 176.13 (17) | C6A—C7A—C8A—C9A | 0.5 (3) |
| C11B—C1B—C6B—C5B | −179.91 (15) | N1A—C8A—C9A—C3A | −1.18 (18) |
| C11B—C1B—C2B—C3B | −179.31 (15) | N1A—C8A—C9A—C4A | 179.34 (15) |
| C2B—C1B—C6B—C5B | 0.0 (2) | C7A—C8A—C9A—C3A | 177.68 (17) |
| C1B—C2B—C3B—N3B | 179.41 (15) | C7A—C8A—C9A—C4A | −1.8 (3) |
| C1B—C2B—C3B—C4B | −1.0 (3) | C3A—C11A—C12A—O12A | 1.4 (3) |
| C2B—C3B—C4B—C5B | 0.5 (2) | C3A—C11A—C12A—C13A | −178.19 (16) |
| N3B—C3B—C4B—C5B | −179.96 (15) | O12A—C12A—C13A—O13A | −177.22 (15) |
| C3B—C4B—C5B—N5B | −179.48 (15) | O12A—C12A—C13A—O14A | 3.0 (2) |
| C3B—C4B—C5B—C6B | 0.4 (2) | C11A—C12A—C13A—O13A | 2.4 (2) |
| N5B—C5B—C6B—C1B | 179.23 (15) | C11A—C12A—C13A—O14A | −177.43 (16) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1A—H1A···O2C | 0.87 (2) | 2.02 (2) | 2.856 (2) | 161 (2) |
| O11B—H11B···S2C | 0.88 (2) | 2.84 (2) | 3.6757 (17) | 160 (2) |
| O11B—H11B···O2C | 0.88 (2) | 1.72 (2) | 2.591 (2) | 174 (2) |
| O12A—H12A···O14A | 0.88 (2) | 2.15 (2) | 2.672 (2) | 118 (2) |
| O12A—H12A···O52B | 0.88 (2) | 2.20 (2) | 2.951 (2) | 144 (2) |
| O13A—H13A···O14Ai | 0.90 (2) | 1.75 (2) | 2.644 (2) | 178 (2) |
| C2A—H2A···O12A | 0.95 | 2.34 | 2.876 (2) | 115 |
| C11A—H11A···O13A | 0.95 | 2.45 | 2.794 (3) | 101 |
| C1C—D12C···O14Aii | 0.98 | 2.56 | 3.472 (3) | 155 |
| C1C—D13C···O12Biii | 0.98 | 2.52 | 3.372 (3) | 145 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x, −y+1, −z+1; (iii) −x, −y, −z+1.
References
- Aakeröy, C. B., Beatty, A. M. & Helfrich, B. A. (2001). Angew. Chem. Int. Ed. 40, 3240–3242. [DOI] [PubMed]
- Aakeröy, C. B., Hurley, E. P. & Desper, J. (2012). Cryst. Growth Des. 12, 5806–5814.
- Agilent (2013). CrysAlis PRO Agilent Technologies Ltd, Yarnton, England.
- Chadwick, K., Sadiq, G., Davey, R. J., Seaton, C. C., Pritchard, R. G. & Parkin, A. (2009). Cryst. Growth Des. 9, 1278–1279.
- Chantrapromma, S., Usman, A., Fun, H.-K., Poh, B.-L. & Karalai, C. (2002). Acta Cryst. C58, o589–o590. [DOI] [PubMed]
- Etter, M. C. & Frankenbach, G. M. (1989). Chem. Mater. 1, 10–11.
- Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.
- Jones, A. O. F., Blagden, N., McIntyre, G. T., Parkin, A., Seaton, C. C., Thomas, L. H. & Wilson, C. C. (2010). Cryst. Growth Des. 13, 497–509.
- Leiserowitz, L. (1976). Acta Cryst. B32, 775–802.
- Lynch, D. E., Smith, G., Byriel, K. A. & Kennard, C. H. L. (1991). Aust. J. Chem. 44, 1017–1022.
- Montis, R. & Hursthouse, M. B. (2012). CrystEngComm, 14, 5242– 5254.
- Okabe, N. & Adachi, Y. (1998). Acta Cryst. C54, 1330–1331.
- Prince, P., Fronczek, F. R. & Gandour, R. D. (1991). Acta Cryst. C47, 895–898.
- Sharma, C. V. K., Panneerselvam, K., Pilati, T. & Desiraju, G. R. (1993). J. Chem. Soc. Perkin Trans. 2, pp. 2203–2216.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I, II. DOI: 10.1107/S1600536814019898/sj5421sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814019898/sj5421Isup2.hkl
Structure factors: contains datablock(s) II. DOI: 10.1107/S1600536814019898/sj5421IIsup3.hkl
Supporting information file. DOI: 10.1107/S1600536814019898/sj5421Isup4.cml
Supporting information file. DOI: 10.1107/S1600536814019898/sj5421IIsup5.cml
Additional supporting information: crystallographic information; 3D view; checkCIF report





