In the crystal, molecules are linked by N—H⋯O hydrogen bonds, forming inversion dimers, which are linked by a further N—H⋯O hydrogen bond, forming chains along [100]. There are intra- and intermolecular C—H⋯π interactions present, the latter linking the chains to form a three-dimensional supramolecular structure.
Keywords: crystal structure, indole, bis-indolymethane, MRI contrast agent, N—H⋯O hydrogen bonds, C—H⋯π interactions
Abstract
In the title compound, C27H21ClN2O4, the mean planes of the two indole ring systems (r.m.s. deviations = 0.021 and 0.024 Å) are approximately perpendicular to one another, with a dihedral angle of 79.54 (12)°. The benzene ring is twisted with respect to the mean planes of the two indole ring systems at angles of 80.14 (15) and 86.30 (15)°. In the crystal, molecules are linked by N—H⋯O hydrogen bonds, forming inversion dimers with an R 2 2(18) ring motif. The dimers are linked by a further N—H⋯O hydrogen bond, forming chains along [100]. There are intra- and intermolecular C—H⋯π interactions present, the latter linking the chains to form a three-dimensional supramolecular structure.
Chemical context
Indole derivatives are found abundantly in a variety of natural plants and exhibit various physiological properties (Poter et al., 1977 ▶; Sundberg, 1996 ▶). Among them, bis-indolymethane derivatives have been found to be potentially bioactive compounds (Chang et al., 1999 ▶; Ge et al., 1999 ▶). In recent years, the synthesis and applications of bis-indolymethane derivatives have been studied widely. The title compound is one of the bis-indolymethane derivatives used as a precursor for MRI contrast agents (Ni, 2008 ▶). We report herein on its synthesis and crystal structure. Similar structures are reported by Sun et al. (2012 ▶, 2013 ▶).
Structural commentary
The molecular structure of the title compound is shown in Fig. 1 ▶. The benzene ring (C1–C6) is twisted with respect to the two indole rings, (N1/C8–C15) and (N2/CC18–C25), making dihedral angles of 80.14 (15) and 83.30 (15)°, respectively. The indole ring systems make a dihedral angle of 79.54 (12)°.
In the crystal, molecules are linked by N—H⋯O hydrogen bonds, forming inversion dimers with an (18) ring motif (Fig. 2 ▶ and Table 1 ▶). The dimers are linked by a further N—H⋯O hydrogen bond, forming chains along [100] (Fig. 2 ▶ and Table 1 ▶). There are intra- and intermolecular C—H⋯π interactions present (Table 1 ▶); the latter link the chains to form a three-dimensional supramolecular structure.
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
N2—H2A⋯O1i | 0.86 | 2.04 | 2.862 (3) | 159 |
N1—H1A⋯O3ii | 0.86 | 2.08 | 2.923 (4) | 168 |
C20—H20A⋯Cg1 | 0.93 | 2.89 | 3.568 (4) | 131 |
C10—H10A⋯Cg3 | 0.93 | 2.90 | 3.705 (5) | 146 |
C27—H27A⋯Cg4iii | 0.96 | 2.78 | 3.719 (5) | 166 |
C11—H11A⋯Cg5iv | 0.93 | 2.88 | 3.750 (4) | 156 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Synthesis and crystallization
Methyl indole-2-carboxylate (17.5 g, 100 mmol) was dissolved in 200 ml methanol; 4-chlorobenzaldehyde (7.0 g, 50 mmol) was added and the mixture heated to reflux. Concentrated HCl (3.7 ml) was added and the reaction was left for 1 h. After cooling the white product formed was filtered off and washed thoroughly with methanol; yield 95%. The reaction was followed by TLC (CHCl3:hexane = 1:1). Crystals of the title compound suitable for X-ray analysis were obtained by slow evaporation of an ethanol solution.
Refinement
Crystal data, data collection and structure refinement details are summarized in Table 2 ▶. H atoms were positioned geometrically, and constrained to ride on their parent atoms: N—H = 0.86 Å and C—H = 0.93, 0.96, and 0.98 Å for aromatic, methyl and methine H atoms, respectively, with U iso(H) = 1.5Ueq(C) for methyl H atoms and = 1.2Ueq(N,C) for other H atoms.
Table 2. Experimental details.
Crystal data | |
Chemical formula | C27H21ClN2O4 |
M r | 472.91 |
Crystal system, space group | Triclinic, P |
Temperature (K) | 293 |
a, b, c (Å) | 10.126 (2), 11.090 (2), 12.246 (2) |
α, β, γ (°) | 109.58 (3), 111.50 (3), 91.32 (3) |
V (Å3) | 1188.7 (4) |
Z | 2 |
Radiation type | Mo Kα |
μ (mm−1) | 0.20 |
Crystal size (mm) | 0.30 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Enraf–Nonius CAD-4 |
Absorption correction | ψ scan (North et al., 1968 ▶) |
T min, T max | 0.943, 0.981 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4651, 4381, 2728 |
R int | 0.024 |
(sin θ/λ)max (Å−1) | 0.603 |
Refinement | |
R[F 2 > 2σ(F 2)], wR(F 2), S | 0.057, 0.177, 1.01 |
No. of reflections | 4381 |
No. of parameters | 307 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.18, −0.33 |
Supplementary Material
Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814020686/su2784sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814020686/su2784Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536814020686/su2784Isup3.cml
Acknowledgments
The authors thank the Center of Testing and Analysis, Nanjing University, for support. Funding for this research was provided by Nanjing College of Chemical Technology (NHKY-2013–02).
supplementary crystallographic information
Crystal data
C27H21ClN2O4 | Z = 2 |
Mr = 472.91 | F(000) = 492 |
Triclinic, P1 | Dx = 1.321 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 10.126 (2) Å | Cell parameters from 25 reflections |
b = 11.090 (2) Å | θ = 9–13° |
c = 12.246 (2) Å | µ = 0.20 mm−1 |
α = 109.58 (3)° | T = 293 K |
β = 111.50 (3)° | Block, colourless |
γ = 91.32 (3)° | 0.30 × 0.20 × 0.10 mm |
V = 1188.7 (4) Å3 |
Data collection
Enraf–Nonius CAD-4 diffractometer | 2728 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.024 |
Graphite monochromator | θmax = 25.4°, θmin = 1.9° |
ω/2θ scans | h = 0→12 |
Absorption correction: ψ scan (North et al., 1968) | k = −13→13 |
Tmin = 0.943, Tmax = 0.981 | l = −14→13 |
4651 measured reflections | 3 standard reflections every 200 reflections |
4381 independent reflections | intensity decay: 1% |
Refinement
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.057 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.177 | H-atom parameters constrained |
S = 1.01 | w = 1/[σ2(Fo2) + (0.1P)2 + 0.1P] where P = (Fo2 + 2Fc2)/3 |
4381 reflections | (Δ/σ)max < 0.001 |
307 parameters | Δρmax = 0.18 e Å−3 |
0 restraints | Δρmin = −0.33 e Å−3 |
Special details
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.48461 (11) | 0.07229 (11) | 0.16877 (9) | 0.0792 (4) | |
O1 | 1.1884 (2) | 0.5955 (2) | 0.8803 (2) | 0.0542 (6) | |
N1 | 1.3863 (3) | 0.3971 (3) | 0.7210 (3) | 0.0494 (7) | |
H1A | 1.4745 | 0.4332 | 0.7676 | 0.059* | |
C1 | 0.8128 (3) | 0.1650 (3) | 0.5022 (3) | 0.0481 (8) | |
H1B | 0.8548 | 0.1250 | 0.5593 | 0.058* | |
N2 | 0.8964 (3) | 0.3420 (3) | 0.9111 (2) | 0.0472 (7) | |
H2A | 0.8496 | 0.3612 | 0.9590 | 0.057* | |
O2 | 1.4243 (2) | 0.6008 (2) | 0.9253 (2) | 0.0643 (7) | |
C2 | 0.6959 (3) | 0.0963 (3) | 0.3918 (3) | 0.0486 (8) | |
H2B | 0.6599 | 0.0110 | 0.3745 | 0.058* | |
O3 | 0.6953 (2) | 0.4961 (2) | 0.8462 (2) | 0.0649 (7) | |
C3 | 0.6339 (3) | 0.1556 (3) | 0.3084 (3) | 0.0505 (8) | |
O4 | 0.7917 (3) | 0.5349 (2) | 0.7210 (2) | 0.0649 (7) | |
C4 | 0.6861 (4) | 0.2805 (4) | 0.3326 (3) | 0.0636 (10) | |
H4A | 0.6429 | 0.3198 | 0.2752 | 0.076* | |
C5 | 0.8042 (4) | 0.3484 (3) | 0.4436 (3) | 0.0544 (9) | |
H5A | 0.8401 | 0.4334 | 0.4599 | 0.065* | |
C6 | 0.8694 (3) | 0.2916 (3) | 0.5305 (3) | 0.0392 (7) | |
C7 | 0.9952 (3) | 0.3692 (3) | 0.6546 (3) | 0.0379 (7) | |
H7A | 0.9867 | 0.4608 | 0.6708 | 0.045* | |
C8 | 1.1433 (3) | 0.3553 (3) | 0.6522 (3) | 0.0387 (7) | |
C9 | 1.1884 (3) | 0.2641 (3) | 0.5618 (3) | 0.0420 (7) | |
C10 | 1.1168 (4) | 0.1620 (3) | 0.4438 (3) | 0.0520 (8) | |
H10A | 1.0169 | 0.1414 | 0.4082 | 0.062* | |
C11 | 1.1962 (4) | 0.0937 (3) | 0.3823 (4) | 0.0610 (10) | |
H11A | 1.1492 | 0.0269 | 0.3042 | 0.073* | |
C12 | 1.3474 (4) | 0.1226 (4) | 0.4348 (4) | 0.0628 (10) | |
H12A | 1.3983 | 0.0729 | 0.3917 | 0.075* | |
C13 | 1.4211 (4) | 0.2216 (3) | 0.5474 (4) | 0.0586 (9) | |
H13A | 1.5211 | 0.2412 | 0.5814 | 0.070* | |
C14 | 1.3401 (3) | 0.2928 (3) | 0.6098 (3) | 0.0458 (8) | |
C15 | 1.2682 (3) | 0.4352 (3) | 0.7465 (3) | 0.0421 (7) | |
C16 | 1.2854 (3) | 0.5492 (3) | 0.8566 (3) | 0.0435 (7) | |
C17 | 1.4544 (5) | 0.7217 (4) | 1.0310 (4) | 0.0861 (14) | |
H17A | 1.5566 | 0.7502 | 1.0740 | 0.129* | |
H17B | 1.4165 | 0.7089 | 1.0883 | 0.129* | |
H17C | 1.4102 | 0.7863 | 1.0007 | 0.129* | |
C18 | 0.9788 (3) | 0.3408 (3) | 0.7625 (3) | 0.0377 (7) | |
C19 | 1.0442 (3) | 0.2506 (3) | 0.8189 (3) | 0.0407 (7) | |
C20 | 1.1385 (3) | 0.1625 (3) | 0.7983 (3) | 0.0501 (8) | |
H20A | 1.1738 | 0.1553 | 0.7366 | 0.060* | |
C21 | 1.1774 (4) | 0.0877 (4) | 0.8703 (4) | 0.0604 (9) | |
H21A | 1.2390 | 0.0289 | 0.8567 | 0.073* | |
C22 | 1.1255 (4) | 0.0985 (4) | 0.9646 (4) | 0.0640 (10) | |
H22A | 1.1550 | 0.0474 | 1.0131 | 0.077* | |
C23 | 1.0335 (4) | 0.1817 (3) | 0.9869 (3) | 0.0565 (9) | |
H23A | 1.0004 | 0.1889 | 1.0500 | 0.068* | |
C24 | 0.9908 (3) | 0.2555 (3) | 0.9116 (3) | 0.0447 (8) | |
C25 | 0.8887 (3) | 0.3933 (3) | 0.8212 (3) | 0.0407 (7) | |
C26 | 0.7834 (3) | 0.4793 (3) | 0.7995 (3) | 0.0459 (8) | |
C27 | 0.6854 (5) | 0.6167 (4) | 0.6893 (5) | 0.0922 (15) | |
H27A | 0.7009 | 0.6511 | 0.6319 | 0.138* | |
H27B | 0.6943 | 0.6868 | 0.7648 | 0.138* | |
H27C | 0.5907 | 0.5662 | 0.6501 | 0.138* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0580 (6) | 0.0938 (8) | 0.0525 (6) | 0.0045 (5) | 0.0014 (4) | 0.0102 (5) |
O1 | 0.0494 (14) | 0.0606 (14) | 0.0504 (13) | 0.0031 (11) | 0.0266 (11) | 0.0107 (11) |
N1 | 0.0327 (14) | 0.0601 (17) | 0.0575 (17) | 0.0042 (12) | 0.0215 (13) | 0.0205 (14) |
C1 | 0.0460 (18) | 0.0504 (19) | 0.0497 (18) | 0.0086 (15) | 0.0175 (15) | 0.0222 (16) |
N2 | 0.0437 (15) | 0.0562 (16) | 0.0462 (15) | 0.0066 (13) | 0.0277 (13) | 0.0134 (13) |
O2 | 0.0417 (13) | 0.0720 (16) | 0.0589 (14) | −0.0074 (12) | 0.0128 (11) | 0.0088 (13) |
C2 | 0.0441 (18) | 0.0450 (18) | 0.0527 (19) | 0.0006 (15) | 0.0176 (16) | 0.0154 (16) |
O3 | 0.0427 (13) | 0.0794 (18) | 0.0800 (17) | 0.0187 (12) | 0.0360 (13) | 0.0249 (14) |
C3 | 0.0404 (18) | 0.060 (2) | 0.0435 (18) | 0.0072 (16) | 0.0130 (15) | 0.0140 (16) |
O4 | 0.0632 (16) | 0.0732 (16) | 0.0851 (18) | 0.0372 (13) | 0.0431 (14) | 0.0447 (15) |
C4 | 0.064 (2) | 0.077 (3) | 0.052 (2) | 0.014 (2) | 0.0130 (18) | 0.038 (2) |
C5 | 0.053 (2) | 0.057 (2) | 0.054 (2) | 0.0014 (16) | 0.0153 (17) | 0.0287 (17) |
C6 | 0.0328 (15) | 0.0458 (17) | 0.0434 (16) | 0.0069 (13) | 0.0193 (13) | 0.0169 (14) |
C7 | 0.0379 (16) | 0.0390 (16) | 0.0417 (16) | 0.0073 (13) | 0.0209 (13) | 0.0150 (13) |
C8 | 0.0359 (16) | 0.0418 (16) | 0.0437 (16) | 0.0053 (13) | 0.0202 (13) | 0.0174 (14) |
C9 | 0.0438 (17) | 0.0433 (17) | 0.0496 (18) | 0.0077 (14) | 0.0279 (15) | 0.0195 (15) |
C10 | 0.0517 (19) | 0.0517 (19) | 0.059 (2) | 0.0041 (16) | 0.0320 (17) | 0.0169 (17) |
C11 | 0.075 (3) | 0.050 (2) | 0.064 (2) | 0.0047 (18) | 0.043 (2) | 0.0122 (18) |
C12 | 0.073 (3) | 0.055 (2) | 0.082 (3) | 0.0176 (19) | 0.057 (2) | 0.022 (2) |
C13 | 0.050 (2) | 0.063 (2) | 0.080 (3) | 0.0171 (17) | 0.0406 (19) | 0.030 (2) |
C14 | 0.0425 (18) | 0.0501 (19) | 0.0564 (19) | 0.0112 (15) | 0.0290 (15) | 0.0232 (16) |
C15 | 0.0378 (16) | 0.0469 (17) | 0.0461 (17) | 0.0055 (14) | 0.0200 (14) | 0.0190 (15) |
C16 | 0.0374 (17) | 0.0534 (19) | 0.0427 (17) | −0.0011 (15) | 0.0181 (14) | 0.0194 (15) |
C17 | 0.077 (3) | 0.083 (3) | 0.058 (2) | −0.031 (2) | 0.012 (2) | −0.002 (2) |
C18 | 0.0292 (14) | 0.0415 (16) | 0.0382 (15) | 0.0022 (12) | 0.0131 (12) | 0.0104 (13) |
C19 | 0.0333 (15) | 0.0455 (17) | 0.0398 (16) | 0.0016 (13) | 0.0139 (13) | 0.0125 (14) |
C20 | 0.0413 (18) | 0.056 (2) | 0.058 (2) | 0.0120 (15) | 0.0219 (16) | 0.0249 (17) |
C21 | 0.048 (2) | 0.063 (2) | 0.079 (3) | 0.0170 (17) | 0.0232 (19) | 0.038 (2) |
C22 | 0.055 (2) | 0.076 (3) | 0.068 (2) | 0.009 (2) | 0.0157 (19) | 0.045 (2) |
C23 | 0.055 (2) | 0.072 (2) | 0.0490 (19) | 0.0034 (19) | 0.0202 (17) | 0.0316 (18) |
C24 | 0.0423 (17) | 0.0509 (19) | 0.0394 (16) | 0.0007 (15) | 0.0160 (14) | 0.0154 (15) |
C25 | 0.0334 (15) | 0.0467 (17) | 0.0413 (16) | 0.0015 (13) | 0.0177 (13) | 0.0125 (14) |
C26 | 0.0348 (16) | 0.0480 (18) | 0.0482 (18) | 0.0024 (14) | 0.0178 (14) | 0.0085 (15) |
C27 | 0.088 (3) | 0.090 (3) | 0.117 (4) | 0.050 (3) | 0.043 (3) | 0.056 (3) |
Geometric parameters (Å, º)
Cl1—C3 | 1.745 (3) | C9—C14 | 1.413 (4) |
O1—C16 | 1.203 (4) | C10—C11 | 1.370 (5) |
N1—C14 | 1.365 (4) | C10—H10A | 0.9300 |
N1—C15 | 1.384 (4) | C11—C12 | 1.406 (5) |
N1—H1A | 0.8600 | C11—H11A | 0.9300 |
C1—C2 | 1.380 (4) | C12—C13 | 1.363 (5) |
C1—C6 | 1.382 (4) | C12—H12A | 0.9300 |
C1—H1B | 0.9300 | C13—C14 | 1.402 (4) |
N2—C24 | 1.370 (4) | C13—H13A | 0.9300 |
N2—C25 | 1.378 (4) | C15—C16 | 1.457 (4) |
N2—H2A | 0.8600 | C17—H17A | 0.9600 |
O2—C16 | 1.336 (4) | C17—H17B | 0.9600 |
O2—C17 | 1.448 (4) | C17—H17C | 0.9600 |
C2—C3 | 1.367 (5) | C18—C25 | 1.383 (4) |
C2—H2B | 0.9300 | C18—C19 | 1.441 (4) |
O3—C26 | 1.213 (4) | C19—C20 | 1.408 (4) |
C3—C4 | 1.365 (5) | C19—C24 | 1.412 (4) |
O4—C26 | 1.329 (4) | C20—C21 | 1.368 (5) |
O4—C27 | 1.451 (4) | C20—H20A | 0.9300 |
C4—C5 | 1.388 (5) | C21—C22 | 1.406 (5) |
C4—H4A | 0.9300 | C21—H21A | 0.9300 |
C5—C6 | 1.384 (4) | C22—C23 | 1.361 (5) |
C5—H5A | 0.9300 | C22—H22A | 0.9300 |
C6—C7 | 1.526 (4) | C23—C24 | 1.392 (5) |
C7—C18 | 1.520 (4) | C23—H23A | 0.9300 |
C7—C8 | 1.521 (4) | C25—C26 | 1.457 (4) |
C7—H7A | 0.9800 | C27—H27A | 0.9600 |
C8—C15 | 1.382 (4) | C27—H27B | 0.9600 |
C8—C9 | 1.448 (4) | C27—H27C | 0.9600 |
C9—C10 | 1.411 (4) | ||
C14—N1—C15 | 108.9 (3) | C14—C13—H13A | 121.4 |
C14—N1—H1A | 125.6 | N1—C14—C13 | 129.0 (3) |
C15—N1—H1A | 125.6 | N1—C14—C9 | 108.2 (3) |
C2—C1—C6 | 122.0 (3) | C13—C14—C9 | 122.8 (3) |
C2—C1—H1B | 119.0 | C8—C15—N1 | 110.2 (3) |
C6—C1—H1B | 119.0 | C8—C15—C16 | 129.1 (3) |
C24—N2—C25 | 108.9 (2) | N1—C15—C16 | 120.7 (3) |
C24—N2—H2A | 125.5 | O1—C16—O2 | 123.8 (3) |
C25—N2—H2A | 125.5 | O1—C16—C15 | 125.2 (3) |
C16—O2—C17 | 116.1 (3) | O2—C16—C15 | 110.9 (3) |
C3—C2—C1 | 118.9 (3) | O2—C17—H17A | 109.5 |
C3—C2—H2B | 120.5 | O2—C17—H17B | 109.5 |
C1—C2—H2B | 120.5 | H17A—C17—H17B | 109.5 |
C4—C3—C2 | 121.1 (3) | O2—C17—H17C | 109.5 |
C4—C3—Cl1 | 118.7 (3) | H17A—C17—H17C | 109.5 |
C2—C3—Cl1 | 120.2 (3) | H17B—C17—H17C | 109.5 |
C26—O4—C27 | 116.5 (3) | C25—C18—C19 | 106.3 (3) |
C3—C4—C5 | 119.4 (3) | C25—C18—C7 | 125.4 (3) |
C3—C4—H4A | 120.3 | C19—C18—C7 | 128.2 (2) |
C5—C4—H4A | 120.3 | C20—C19—C24 | 118.2 (3) |
C6—C5—C4 | 121.0 (3) | C20—C19—C18 | 135.0 (3) |
C6—C5—H5A | 119.5 | C24—C19—C18 | 106.7 (3) |
C4—C5—H5A | 119.5 | C21—C20—C19 | 119.1 (3) |
C1—C6—C5 | 117.5 (3) | C21—C20—H20A | 120.4 |
C1—C6—C7 | 121.9 (3) | C19—C20—H20A | 120.4 |
C5—C6—C7 | 120.5 (3) | C20—C21—C22 | 121.0 (3) |
C18—C7—C8 | 112.7 (2) | C20—C21—H21A | 119.5 |
C18—C7—C6 | 110.0 (2) | C22—C21—H21A | 119.5 |
C8—C7—C6 | 114.8 (2) | C23—C22—C21 | 121.8 (3) |
C18—C7—H7A | 106.2 | C23—C22—H22A | 119.1 |
C8—C7—H7A | 106.2 | C21—C22—H22A | 119.1 |
C6—C7—H7A | 106.2 | C22—C23—C24 | 117.4 (3) |
C15—C8—C9 | 105.6 (3) | C22—C23—H23A | 121.3 |
C15—C8—C7 | 123.1 (3) | C24—C23—H23A | 121.3 |
C9—C8—C7 | 131.3 (3) | N2—C24—C23 | 129.3 (3) |
C10—C9—C14 | 117.8 (3) | N2—C24—C19 | 108.3 (3) |
C10—C9—C8 | 135.1 (3) | C23—C24—C19 | 122.5 (3) |
C14—C9—C8 | 107.1 (3) | N2—C25—C18 | 109.8 (3) |
C11—C10—C9 | 119.3 (3) | N2—C25—C26 | 116.6 (3) |
C11—C10—H10A | 120.4 | C18—C25—C26 | 133.4 (3) |
C9—C10—H10A | 120.4 | O3—C26—O4 | 123.4 (3) |
C10—C11—C12 | 121.3 (3) | O3—C26—C25 | 123.4 (3) |
C10—C11—H11A | 119.3 | O4—C26—C25 | 113.2 (3) |
C12—C11—H11A | 119.3 | O4—C27—H27A | 109.5 |
C13—C12—C11 | 121.6 (3) | O4—C27—H27B | 109.5 |
C13—C12—H12A | 119.2 | H27A—C27—H27B | 109.5 |
C11—C12—H12A | 119.2 | O4—C27—H27C | 109.5 |
C12—C13—C14 | 117.2 (3) | H27A—C27—H27C | 109.5 |
C12—C13—H13A | 121.4 | H27B—C27—H27C | 109.5 |
C6—C1—C2—C3 | −0.4 (5) | C14—N1—C15—C16 | −176.7 (3) |
C1—C2—C3—C4 | 0.2 (5) | C17—O2—C16—O1 | −2.2 (5) |
C1—C2—C3—Cl1 | −179.2 (2) | C17—O2—C16—C15 | 174.5 (3) |
C2—C3—C4—C5 | 0.1 (5) | C8—C15—C16—O1 | −2.9 (5) |
Cl1—C3—C4—C5 | 179.6 (3) | N1—C15—C16—O1 | 173.6 (3) |
C3—C4—C5—C6 | −0.4 (6) | C8—C15—C16—O2 | −179.6 (3) |
C2—C1—C6—C5 | 0.1 (5) | N1—C15—C16—O2 | −3.1 (4) |
C2—C1—C6—C7 | 177.8 (3) | C8—C7—C18—C25 | 151.8 (3) |
C4—C5—C6—C1 | 0.2 (5) | C6—C7—C18—C25 | −78.6 (3) |
C4—C5—C6—C7 | −177.4 (3) | C8—C7—C18—C19 | −32.3 (4) |
C1—C6—C7—C18 | −39.6 (4) | C6—C7—C18—C19 | 97.2 (3) |
C5—C6—C7—C18 | 138.0 (3) | C25—C18—C19—C20 | 176.3 (3) |
C1—C6—C7—C8 | 88.9 (3) | C7—C18—C19—C20 | −0.2 (5) |
C5—C6—C7—C8 | −93.6 (3) | C25—C18—C19—C24 | −1.0 (3) |
C18—C7—C8—C15 | −65.3 (4) | C7—C18—C19—C24 | −177.5 (3) |
C6—C7—C8—C15 | 167.7 (3) | C24—C19—C20—C21 | −1.5 (4) |
C18—C7—C8—C9 | 113.9 (3) | C18—C19—C20—C21 | −178.6 (3) |
C6—C7—C8—C9 | −13.2 (4) | C19—C20—C21—C22 | −0.5 (5) |
C15—C8—C9—C10 | −177.0 (3) | C20—C21—C22—C23 | 1.0 (6) |
C7—C8—C9—C10 | 3.8 (6) | C21—C22—C23—C24 | 0.6 (5) |
C15—C8—C9—C14 | 1.7 (3) | C25—N2—C24—C23 | 179.4 (3) |
C7—C8—C9—C14 | −177.5 (3) | C25—N2—C24—C19 | −0.4 (3) |
C14—C9—C10—C11 | 1.4 (5) | C22—C23—C24—N2 | 177.5 (3) |
C8—C9—C10—C11 | 179.9 (3) | C22—C23—C24—C19 | −2.8 (5) |
C9—C10—C11—C12 | 0.5 (5) | C20—C19—C24—N2 | −176.9 (3) |
C10—C11—C12—C13 | −1.7 (6) | C18—C19—C24—N2 | 0.9 (3) |
C11—C12—C13—C14 | 0.8 (5) | C20—C19—C24—C23 | 3.3 (5) |
C15—N1—C14—C13 | −179.6 (3) | C18—C19—C24—C23 | −178.9 (3) |
C15—N1—C14—C9 | 0.7 (3) | C24—N2—C25—C18 | −0.2 (3) |
C12—C13—C14—N1 | −178.5 (3) | C24—N2—C25—C26 | 174.8 (3) |
C12—C13—C14—C9 | 1.2 (5) | C19—C18—C25—N2 | 0.8 (3) |
C10—C9—C14—N1 | 177.5 (3) | C7—C18—C25—N2 | 177.4 (3) |
C8—C9—C14—N1 | −1.5 (3) | C19—C18—C25—C26 | −173.1 (3) |
C10—C9—C14—C13 | −2.3 (5) | C7—C18—C25—C26 | 3.5 (5) |
C8—C9—C14—C13 | 178.8 (3) | C27—O4—C26—O3 | −1.7 (5) |
C9—C8—C15—N1 | −1.3 (3) | C27—O4—C26—C25 | 176.8 (3) |
C7—C8—C15—N1 | 178.0 (3) | N2—C25—C26—O3 | −7.7 (4) |
C9—C8—C15—C16 | 175.5 (3) | C18—C25—C26—O3 | 165.9 (3) |
C7—C8—C15—C16 | −5.2 (5) | N2—C25—C26—O4 | 173.8 (3) |
C14—N1—C15—C8 | 0.4 (3) | C18—C25—C26—O4 | −12.6 (5) |
Hydrogen-bond geometry (Å, º)
Cg1, Cg3, Cg4 and Cg5 are the centroids of the N1/C8/C9/C14/C15, C1–C6, C9–C14 and C19–C24 rings, respectively.
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O1i | 0.86 | 2.04 | 2.862 (3) | 159 |
N1—H1A···O3ii | 0.86 | 2.08 | 2.923 (4) | 168 |
C20—H20A···Cg1 | 0.93 | 2.89 | 3.568 (4) | 131 |
C10—H10A···Cg3 | 0.93 | 2.90 | 3.705 (5) | 146 |
C27—H27A···Cg4iii | 0.96 | 2.78 | 3.719 (5) | 166 |
C11—H11A···Cg5iv | 0.93 | 2.88 | 3.750 (4) | 156 |
Symmetry codes: (i) −x+2, −y+1, −z+2; (ii) x+1, y, z; (iii) −x+2, −y+1, −z+1; (iv) −x+2, −y, −z+1.
References
- Chang, Y. C., Riby, J., Chang, G. H., Peng, B. C., Firestone, G. & Bjeldanes, L. F. (1999). Biochem. Pharmacol. 58, 825–834. [DOI] [PubMed]
- Enraf–Nonius (1994). CAD-4 EXPRESS Enraf–Nonius, Delft, The Netherlands.
- Ge, X., Fares, F. A. & Yannai, S. (1999). Anticancer Res. 19, 3199–3203. [PubMed]
- Harms, K. & Wocadlo, S. (1995). XCAD4 University of Marburg, Germany.
- Ni, Y. (2008). CMIR, 4, 96–112.
- North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359.
- Porter, J. K., Bacon, C. W., Robbins, J. D., Himmelsbach, D. S. & Higman, H. C. (1977). J. Agric. Food Chem. 25, 88–93. [DOI] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Sun, H.-S., Li, Y.-L., Xu, N., Xu, H. & Zhang, J.-D. (2012). Acta Cryst. E68, o2764. [DOI] [PMC free article] [PubMed]
- Sun, H.-S., Li, Y.-L., Xu, N., Xu, H. & Zhang, J.-D. (2013). Acta Cryst. E69, o1516. [DOI] [PMC free article] [PubMed]
- Sundberg, R. J. (1996). The Chemistry of Indoles, p. 113. New York: Academic Press.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814020686/su2784sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814020686/su2784Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536814020686/su2784Isup3.cml