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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2014 Sep 20;70(Pt 10):o1113. doi: 10.1107/S1600536814020662

Crystal structure of 4-chloro-2-[(5-eth­oxy-1,3,4-thia­diazol-2-yl)meth­yl]-5-(piperidin-1-yl)pyridazin-3(2H)-one

Hongsen Li a,*, Xinfeng Ren a, Ya Li a, Linjing Zhao a
PMCID: PMC4257213  PMID: 25484702

Abstract

In the title mol­ecule, C14H18ClN5O2S, the six atoms of the 1,6-di­hydro­pyridazine ring are essentially coplanar (r.m.s. deviation = 0.008 Å), and the dihedral angle between this and the 1,3,4-thia­diazole ring is 62.06 (10)°. In the crystal, centrosymmetrically related mol­ecules are linked by inter­molecular C—H—O hydrogen bonding to form a supra­molecular dimer. The terminal ethyl group is statistically disordered over two positions.

Keywords: pyridazinone derivatives, crystal structure, C—H—O hydrogen bonding

Related literature  

For the biological activity of pyridazinone derivatives, see: Abouzid et al. (2008); Siddiqui et al. (2010), and for their synthesis, see: Wang et al. (2010); Zhang et al. (2002).graphic file with name e-70-o1113-scheme1.jpg

Experimental  

Crystal data  

  • C14H18ClN5O2S

  • M r = 355.84

  • Triclinic, Inline graphic

  • a = 5.2840 (8) Å

  • b = 11.0323 (16) Å

  • c = 14.902 (2) Å

  • α = 107.318 (2)°

  • β = 91.590 (2)°

  • γ = 99.528 (2)°

  • V = 815.1 (2) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.38 mm−1

  • T = 296 K

  • 0.30 × 0.24 × 0.16 mm

Data collection  

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.895, T max = 0.942

  • 4244 measured reflections

  • 2828 independent reflections

  • 2490 reflections with I > 2σ(I)

  • R int = 0.012

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.121

  • S = 1.58

  • 2828 reflections

  • 229 parameters

  • H-atom parameters constrained

  • Δρmax = 0.22 e Å−3

  • Δρmin = −0.23 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814020662/tk5340sup1.cif

e-70-o1113-sup1.cif (21.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814020662/tk5340Isup2.hkl

e-70-o1113-Isup2.hkl (138.8KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814020662/tk5340Isup3.cml

. DOI: 10.1107/S1600536814020662/tk5340fig1.tif

Mol­ecular structure of the title compound showing atom labelling and displacement ellipsoids at 50%.

CCDC reference: 1024313

Additional supporting information: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C14A—H14A⋯O1i 0.96 2.45 3.366 (11) 160

Symmetry code: (i) Inline graphic.

Acknowledgments

Financial support from the Development Program of the Shanghai University of Engineering Science is gratefully acknowledged.

supplementary crystallographic information

S1. Introduction

S2. Experimental

A mixture of 4,5-di­chloro-2-[(5-eth­oxy-1,3,4-thia­diazol-2-yl)methyl]-pyridazin-3(2H)-one (3.98 g, 1.3 mmol), piperidine (1.37 g, 19.5 mmol), potassium carbonate (3 g) and dry DMF (30mL) was stirred at 40oC for 8 h. The mixture was then poured into ice-water and a yellow precipitate -formed. The precipitate was washed with water, followed by vaccum drying, to give the pure title compound (3.38 g, yield: 73.2 %). The obtained compound was recrystallized from its ethyl acetate/petroleum ether (5:1) to give yellow crystals.

S2.1. Refinement

Carbon-bound H-atoms were placed in calculated positions (C—H = 0.93 to 0.97 Å) and were included in the refinement in the riding model approximation, with Uiso(H) = 1.2–1.5Ueq(C). The terminal ethyl group (C13 and C14) was statistically disordered over two positions.

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound showing atom labelling and displacement ellipsoids at 50%.

Crystal data

C14H18ClN5O2S Z = 2
Mr = 355.84 F(000) = 372
Triclinic, P1 Dx = 1.450 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 5.2840 (8) Å Cell parameters from 2456 reflections
b = 11.0323 (16) Å θ = 2.8–27.3°
c = 14.902 (2) Å µ = 0.38 mm1
α = 107.318 (2)° T = 296 K
β = 91.590 (2)° Block, yellow
γ = 99.528 (2)° 0.30 × 0.24 × 0.16 mm
V = 815.1 (2) Å3

Data collection

Bruker APEXII CCD diffractometer 2828 independent reflections
Radiation source: fine-focus sealed tube 2490 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.012
φ and ω scans θmax = 25.1°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −6→6
Tmin = 0.895, Tmax = 0.942 k = −13→13
4244 measured reflections l = −13→17

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121 H-atom parameters constrained
S = 1.58 w = 1/[σ2(Fo2) + (0.0546P)2] where P = (Fo2 + 2Fc2)/3
2828 reflections (Δ/σ)max = 0.050
229 parameters Δρmax = 0.22 e Å3
0 restraints Δρmin = −0.23 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
C1 1.1293 (4) 0.40442 (18) 0.64144 (14) 0.0529 (5)
H1A 0.9963 0.4362 0.6807 0.064*
H1B 1.1620 0.4550 0.5984 0.064*
C2 1.3686 (5) 0.4198 (2) 0.70167 (19) 0.0710 (7)
H2A 1.4236 0.5100 0.7376 0.085*
H2B 1.5043 0.3928 0.6621 0.085*
C3 1.3239 (5) 0.3396 (2) 0.76876 (18) 0.0726 (7)
H3A 1.4850 0.3448 0.8038 0.087*
H3B 1.2037 0.3733 0.8135 0.087*
C4 1.2172 (5) 0.2004 (2) 0.71378 (17) 0.0623 (6)
H4A 1.3494 0.1633 0.6768 0.075*
H4B 1.1719 0.1521 0.7576 0.075*
C5 0.9873 (5) 0.1870 (2) 0.65010 (17) 0.0654 (6)
H5A 0.9358 0.0973 0.6122 0.079*
H5B 0.8461 0.2120 0.6873 0.079*
C6 0.8041 (4) 0.24108 (16) 0.34196 (13) 0.0418 (4)
C7 0.9639 (3) 0.28093 (16) 0.42889 (13) 0.0390 (4)
C8 0.8999 (4) 0.23463 (16) 0.50280 (13) 0.0426 (4)
C9 0.6649 (4) 0.14118 (19) 0.48425 (14) 0.0513 (5)
H9 0.6167 0.1065 0.5323 0.062*
C10 0.3987 (4) 0.1095 (2) 0.25530 (14) 0.0517 (5)
H10A 0.3853 0.1833 0.2340 0.062*
H10B 0.2307 0.0783 0.2729 0.062*
C11 0.4730 (4) 0.00539 (18) 0.17587 (13) 0.0452 (5)
C12 0.6399 (5) −0.1324 (2) 0.05014 (15) 0.0605 (6)
C13A 0.6909 (17) −0.3381 (7) −0.0461 (7) 0.074 (2) 0.503 (13)
H13A 0.6744 −0.3654 0.0099 0.089* 0.503 (13)
H13B 0.5282 −0.3668 −0.0845 0.089* 0.503 (13)
C14A 0.9045 (12) −0.3878 (6) −0.1004 (7) 0.083 (3) 0.503 (13)
H14A 0.9387 −0.3461 −0.1480 0.125* 0.503 (13)
H14B 0.8561 −0.4794 −0.1298 0.125* 0.503 (13)
H14C 1.0565 −0.3701 −0.0584 0.125* 0.503 (13)
C13B 0.7259 (16) −0.3012 (8) −0.0838 (6) 0.071 (2) 0.497 (13)
H13C 0.8075 −0.3014 −0.1413 0.085* 0.497 (13)
H13D 0.5414 −0.3283 −0.0987 0.085* 0.497 (13)
C14B 0.8311 (17) −0.3870 (7) −0.0377 (8) 0.086 (3) 0.497 (13)
H14D 1.0040 −0.3483 −0.0114 0.129* 0.497 (13)
H14E 0.8312 −0.4692 −0.0836 0.129* 0.497 (13)
H14F 0.7260 −0.3987 0.0116 0.129* 0.497 (13)
Cl1 1.24862 (9) 0.38323 (4) 0.42952 (4) 0.0529 (2)
N1 1.0406 (3) 0.26824 (15) 0.58761 (11) 0.0507 (4)
N2 0.5837 (3) 0.15084 (14) 0.33835 (11) 0.0437 (4)
N3 0.5152 (3) 0.10080 (16) 0.40812 (12) 0.0519 (4)
N4 0.3405 (4) −0.10968 (17) 0.14941 (13) 0.0585 (5)
N5 0.4391 (4) −0.19254 (17) 0.07519 (14) 0.0630 (5)
O1 0.8484 (3) 0.27791 (13) 0.27325 (10) 0.0585 (4)
O2 0.7819 (4) −0.1833 (2) −0.01905 (13) 0.0901 (6)
S1 0.73552 (11) 0.02873 (5) 0.11291 (4) 0.0556 (2)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0616 (13) 0.0406 (11) 0.0504 (12) 0.0058 (9) −0.0067 (10) 0.0075 (9)
C2 0.0735 (16) 0.0530 (13) 0.0755 (16) −0.0080 (11) −0.0252 (13) 0.0164 (12)
C3 0.0772 (17) 0.0714 (15) 0.0639 (15) 0.0039 (12) −0.0229 (13) 0.0205 (13)
C4 0.0673 (15) 0.0634 (14) 0.0622 (14) 0.0080 (11) −0.0004 (11) 0.0307 (12)
C5 0.0680 (15) 0.0626 (14) 0.0651 (14) −0.0112 (11) −0.0107 (12) 0.0326 (12)
C6 0.0471 (11) 0.0336 (9) 0.0436 (11) 0.0097 (8) 0.0044 (8) 0.0091 (8)
C7 0.0404 (10) 0.0292 (8) 0.0459 (10) 0.0035 (7) 0.0023 (8) 0.0109 (7)
C8 0.0475 (11) 0.0324 (9) 0.0443 (11) 0.0013 (7) −0.0012 (8) 0.0102 (8)
C9 0.0562 (13) 0.0474 (11) 0.0436 (11) −0.0099 (9) −0.0005 (9) 0.0145 (9)
C10 0.0438 (11) 0.0568 (12) 0.0496 (12) 0.0116 (9) −0.0059 (9) 0.0085 (9)
C11 0.0427 (11) 0.0483 (11) 0.0413 (10) 0.0047 (8) −0.0079 (8) 0.0117 (8)
C12 0.0638 (15) 0.0613 (13) 0.0476 (12) 0.0168 (11) −0.0100 (11) 0.0022 (10)
C13A 0.088 (5) 0.058 (4) 0.058 (5) 0.008 (3) 0.015 (4) −0.006 (3)
C14A 0.073 (4) 0.068 (4) 0.088 (6) 0.010 (3) 0.024 (4) −0.007 (3)
C13B 0.080 (4) 0.073 (5) 0.045 (4) 0.009 (3) −0.002 (3) 0.000 (3)
C14B 0.090 (6) 0.075 (4) 0.085 (6) 0.010 (4) −0.001 (5) 0.017 (4)
Cl1 0.0456 (3) 0.0449 (3) 0.0658 (4) −0.0037 (2) 0.0049 (2) 0.0198 (2)
N1 0.0600 (11) 0.0404 (9) 0.0476 (10) −0.0061 (7) −0.0102 (8) 0.0170 (7)
N2 0.0423 (9) 0.0424 (8) 0.0409 (9) 0.0042 (7) −0.0018 (7) 0.0069 (7)
N3 0.0518 (10) 0.0487 (9) 0.0467 (10) −0.0064 (7) 0.0007 (8) 0.0107 (8)
N4 0.0539 (11) 0.0553 (11) 0.0567 (11) −0.0004 (8) −0.0072 (9) 0.0092 (9)
N5 0.0615 (12) 0.0521 (11) 0.0610 (12) 0.0042 (9) −0.0115 (10) 0.0007 (9)
O1 0.0772 (10) 0.0514 (8) 0.0479 (8) 0.0030 (7) −0.0008 (7) 0.0220 (7)
O2 0.0843 (13) 0.0960 (14) 0.0663 (11) 0.0270 (11) 0.0062 (10) −0.0163 (10)
S1 0.0575 (4) 0.0545 (3) 0.0502 (3) 0.0046 (2) 0.0026 (3) 0.0120 (2)

Geometric parameters (Å, º)

C1—N1 1.466 (2) C10—N2 1.464 (2)
C1—C2 1.486 (3) C10—C11 1.496 (3)
C1—H1A 0.9700 C10—H10A 0.9700
C1—H1B 0.9700 C10—H10B 0.9700
C2—C3 1.520 (3) C11—N4 1.284 (3)
C2—H2A 0.9700 C11—S1 1.723 (2)
C2—H2B 0.9700 C12—N5 1.282 (3)
C3—C4 1.512 (3) C12—O2 1.334 (3)
C3—H3A 0.9700 C12—S1 1.725 (2)
C3—H3B 0.9700 C13A—C14A 1.491 (13)
C4—C5 1.480 (3) C13A—O2 1.619 (8)
C4—H4A 0.9700 C13A—H13A 0.9700
C4—H4B 0.9700 C13A—H13B 0.9700
C5—N1 1.476 (2) C14A—H14A 0.9600
C5—H5A 0.9700 C14A—H14B 0.9600
C5—H5B 0.9700 C14A—H14C 0.9600
C6—O1 1.224 (2) C13B—O2 1.349 (7)
C6—N2 1.390 (2) C13B—C14B 1.489 (14)
C6—C7 1.436 (3) C13B—H13C 0.9700
C7—C8 1.374 (3) C13B—H13D 0.9700
C7—Cl1 1.7228 (18) C14B—H14D 0.9600
C8—N1 1.366 (2) C14B—H14E 0.9600
C8—C9 1.438 (3) C14B—H14F 0.9600
C9—N3 1.282 (3) N2—N3 1.347 (2)
C9—H9 0.9300 N4—N5 1.385 (3)
N1—C1—C2 110.36 (17) N2—C10—H10A 109.0
N1—C1—H1A 109.6 C11—C10—H10A 109.0
C2—C1—H1A 109.6 N2—C10—H10B 109.0
N1—C1—H1B 109.6 C11—C10—H10B 109.0
C2—C1—H1B 109.6 H10A—C10—H10B 107.8
H1A—C1—H1B 108.1 N4—C11—C10 121.30 (19)
C1—C2—C3 110.7 (2) N4—C11—S1 114.96 (16)
C1—C2—H2A 109.5 C10—C11—S1 123.74 (14)
C3—C2—H2A 109.5 N5—C12—O2 126.0 (2)
C1—C2—H2B 109.5 N5—C12—S1 116.59 (17)
C3—C2—H2B 109.5 O2—C12—S1 117.4 (2)
H2A—C2—H2B 108.1 C14A—C13A—O2 102.4 (7)
C4—C3—C2 109.89 (19) C14A—C13A—H13A 111.3
C4—C3—H3A 109.7 O2—C13A—H13A 111.3
C2—C3—H3A 109.7 C14A—C13A—H13B 111.3
C4—C3—H3B 109.7 O2—C13A—H13B 111.3
C2—C3—H3B 109.7 H13A—C13A—H13B 109.2
H3A—C3—H3B 108.2 O2—C13B—C14B 104.2 (7)
C5—C4—C3 112.46 (19) O2—C13B—H13C 110.9
C5—C4—H4A 109.1 C14B—C13B—H13C 110.9
C3—C4—H4A 109.1 O2—C13B—H13D 110.9
C5—C4—H4B 109.1 C14B—C13B—H13D 110.9
C3—C4—H4B 109.1 H13C—C13B—H13D 108.9
H4A—C4—H4B 107.8 C13B—C14B—H14D 109.5
N1—C5—C4 111.07 (17) C13B—C14B—H14E 109.5
N1—C5—H5A 109.4 H14D—C14B—H14E 109.5
C4—C5—H5A 109.4 C13B—C14B—H14F 109.5
N1—C5—H5B 109.4 H14D—C14B—H14F 109.5
C4—C5—H5B 109.4 H14E—C14B—H14F 109.5
H5A—C5—H5B 108.0 C8—N1—C1 120.60 (15)
O1—C6—N2 119.39 (17) C8—N1—C5 119.35 (15)
O1—C6—C7 125.93 (18) C1—N1—C5 111.72 (16)
N2—C6—C7 114.67 (16) N3—N2—C6 125.32 (15)
C8—C7—C6 122.23 (17) N3—N2—C10 115.33 (15)
C8—C7—Cl1 123.29 (14) C6—N2—C10 119.26 (16)
C6—C7—Cl1 114.37 (14) C9—N3—N2 116.97 (16)
N1—C8—C7 125.69 (17) C11—N4—N5 113.00 (19)
N1—C8—C9 120.06 (17) C12—N5—N4 110.34 (17)
C7—C8—C9 114.23 (17) C12—O2—C13B 127.2 (5)
N3—C9—C8 126.57 (19) C12—O2—C13A 105.7 (4)
N3—C9—H9 116.7 C13B—O2—C13A 29.3 (3)
C8—C9—H9 116.7 C11—S1—C12 85.12 (11)
N2—C10—C11 112.73 (15)
N1—C1—C2—C3 −58.3 (3) C7—C6—N2—N3 −0.2 (3)
C1—C2—C3—C4 54.5 (3) O1—C6—N2—C10 −4.9 (3)
C2—C3—C4—C5 −52.6 (3) C7—C6—N2—C10 176.21 (15)
C3—C4—C5—N1 53.7 (3) C11—C10—N2—N3 −100.33 (19)
O1—C6—C7—C8 −179.95 (18) C11—C10—N2—C6 82.9 (2)
N2—C6—C7—C8 −1.1 (3) C8—C9—N3—N2 −0.1 (3)
O1—C6—C7—Cl1 −3.6 (2) C6—N2—N3—C9 0.8 (3)
N2—C6—C7—Cl1 175.26 (12) C10—N2—N3—C9 −175.75 (18)
C6—C7—C8—N1 −179.63 (17) C10—C11—N4—N5 −179.86 (16)
Cl1—C7—C8—N1 4.3 (3) S1—C11—N4—N5 0.5 (2)
C6—C7—C8—C9 1.6 (3) O2—C12—N5—N4 180.0 (2)
Cl1—C7—C8—C9 −174.41 (14) S1—C12—N5—N4 0.7 (2)
N1—C8—C9—N3 −179.9 (2) C11—N4—N5—C12 −0.8 (3)
C7—C8—C9—N3 −1.0 (3) N5—C12—O2—C13B 9.5 (7)
N2—C10—C11—N4 112.2 (2) S1—C12—O2—C13B −171.2 (5)
N2—C10—C11—S1 −68.2 (2) N5—C12—O2—C13A −13.1 (5)
C7—C8—N1—C1 50.6 (3) S1—C12—O2—C13A 166.2 (4)
C9—C8—N1—C1 −130.8 (2) C14B—C13B—O2—C12 −87.8 (7)
C7—C8—N1—C5 −163.8 (2) C14B—C13B—O2—C13A −38.9 (11)
C9—C8—N1—C5 14.9 (3) C14A—C13A—O2—C12 −163.5 (7)
C2—C1—N1—C8 −152.6 (2) C14A—C13A—O2—C13B 55.1 (11)
C2—C1—N1—C5 59.4 (2) N4—C11—S1—C12 −0.12 (17)
C4—C5—N1—C8 154.6 (2) C10—C11—S1—C12 −179.72 (17)
C4—C5—N1—C1 −56.8 (3) N5—C12—S1—C11 −0.36 (18)
O1—C6—N2—N3 178.74 (16) O2—C12—S1—C11 −179.71 (19)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C14A—H14A···O1i 0.96 2.45 3.366 (11) 160

Symmetry code: (i) −x+2, −y, −z.

Footnotes

Supporting information for this paper is available from the IUCr electronic archives (Reference: TK5340).

References

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  3. Sheldrick, G. M. (1996). SADABS University of Gοttingen, Germany.
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  7. Zhang, Y., Liu, D. & Dai, C. F. (2002). Chem. J. Chin. Univ. 23, 1882–1886.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814020662/tk5340sup1.cif

e-70-o1113-sup1.cif (21.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814020662/tk5340Isup2.hkl

e-70-o1113-Isup2.hkl (138.8KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814020662/tk5340Isup3.cml

. DOI: 10.1107/S1600536814020662/tk5340fig1.tif

Mol­ecular structure of the title compound showing atom labelling and displacement ellipsoids at 50%.

CCDC reference: 1024313

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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