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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2014 Oct 24;70(Pt 11):o1177–o1178. doi: 10.1107/S1600536814022715

Crystal structure of 3-[(E)-2-(4-phenyl-1,3-thia­zol-2-yl)hydrazin-1-yl­idene]indolin-2-one

Bhimashankar M Halasangi a, Prema S Badami b, Sangamesh A Patil a, G N Anil Kumar c,*
PMCID: PMC4257251  PMID: 25484816

Abstract

In the title mol­ecule, C17H12N4OS, the thia­zole ring forms a dihedral angle of 10.8 (2)° with the phenyl ring and an angle of 3.1 (3)° with the indole ring system [which has a maximum deviation of 0.035 (2) Å]. The dihedral angle between the planes of the phenyl ring and the indole ring system is 11.5 (1)°. An intra­molecular N—H⋯O hydrogen bond is observed. In the crystal, pairs of N—H⋯O hydrogen bonds form inversion dimers with an R 2 2(8) graph-set motif.

Keywords: crystal structure; indolinone; hydrazine; 1,3-thia­zole; hydrogen bonding; biological activity

Related literature  

For the biological activities of substituted thia­zoles, see: Ali et al. (2011); Bharti et al. (2010); Kondratieva et al. (2007). For a related structure, see: Sadık et al. (2004).graphic file with name e-70-o1177-scheme1.jpg

Experimental  

Crystal data  

  • C17H12N4OS

  • M r = 320.37

  • Monoclinic, Inline graphic

  • a = 17.7108 (8) Å

  • b = 5.1411 (2) Å

  • c = 15.9065 (6) Å

  • β = 94.706 (3)°

  • V = 1443.45 (10) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.23 mm−1

  • T = 296 K

  • 0.35 × 0.31 × 0.25 mm

Data collection  

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.887, T max = 0.934

  • 11530 measured reflections

  • 3142 independent reflections

  • 2124 reflections with I > 2σ(I)

  • R int = 0.039

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.046

  • wR(F 2) = 0.109

  • S = 1.09

  • 3142 reflections

  • 208 parameters

  • H-atom parameters constrained

  • Δρmax = 0.20 e Å−3

  • Δρmin = −0.25 e Å−3

Data collection: SMART (Bruker, 1998); cell refinement: SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and CAMERON (Watkin et al., 1993); software used to prepare material for publication: PARST (Nardelli, 1995) and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814022715/lh5732sup1.cif

e-70-o1177-sup1.cif (21.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814022715/lh5732Isup2.hkl

e-70-o1177-Isup2.hkl (151.1KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814022715/lh5732Isup3.cml

. DOI: 10.1107/S1600536814022715/lh5732fig1.tif

The mol­ecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level. The dashed line indicates an intra­molecular N—H⋯N bond

. DOI: 10.1107/S1600536814022715/lh5732fig2.tif

Part of the crystal structure with hydrogen bonds indicated as dotted lines

CCDC reference: 1029498

Additional supporting information: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (, ).

DHA DH HA D A DHA
N2H2O1 0.86 2.12 2.771(2) 133
N4H4O1i 0.86 2.11 2.922(2) 158

Symmetry code: (i) Inline graphic.

Acknowledgments

USIC, Karnatak University, Dharwad, is greatly acknowledged for the single-crystal XRD data collection. BMH is grateful to the UGC for financial support in the form of an RFSMS scholarship.

supplementary crystallographic information

S1. Experimental

S1.1. Synthesis and crystallization

An ethano­lic solution of 1.81g (0.01 M) of 2-hydrazino-4-phenyl­thia­zole was added drop wise to an etanolic solution of 1.47g (0.01 M) of isatin with constant stirring. After the complete addition, the reaction mixture was stirred further for 8-9 hrs until the solid separated out from the reaction mixture. The separated solid was filtered and washed with cold alcohol, dried and recrystallized from DMF (Yield: 95 %. MP: 443-446K). Block-shaped colourless crystals were obtained by slow evaporation of a solution of the title compound at room temperature in DMF:water in the ratio 2:1.

S1.2. Refinement

H atoms were placed in idealized positions and refined using a riding-model approximation with N—H = 0.86 Å, C—H = 0.93 Å and with Uiso(H) = 1.2Ueq(N,C).

S2. Comment

Isatin derivatives and compounds containing a thia­zole ring are class of organic compounds which have fascinated many synthetic researchers due to their wide range of biological activity ( Ali et al., 2011; Bharti et al., 2010; Kondratieva et al., 2007).

The molecular structure of the title compound is shown in Fig. 1. An intra­molecular N—H···O hydrogen bond is observed. The thia­zole ring is essentially planar with a maximum deviation of 0.005 (2) Å for atom N1. The thia­zole ring (S1/C9/N1/C7/C8) forms dihedral angles of 10.8 (2)° with the phenyl ring (C1–C6) and 3.1 (3)° with the indole ring system (C10—C16/N4/C17, with a maximum deviation of 0.035 (2)Å for atom C17). The dihedral angle between the phenyl ring and the indole ring system is 11.5 (1)Å. In the crystal, pairs of N—H···O hydrogen bonds form inversion dimers (Fig. 2). A closely related structure appears in the literature (Sadik, et al., 2004).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level. The dashed line indicates an intramolecular N—H···N bond

Fig. 2.

Fig. 2.

Part of the crystal structure with hydrogen bonds indicated as dotted lines

Crystal data

C17H12N4OS Z = 4
Mr = 320.37 F(000) = 664
Monoclinic, P21/c Dx = 1.474 Mg m3
Hall symbol: -P 2ybc Mo Kα radiation, λ = 0.71073 Å
a = 17.7108 (8) Å µ = 0.23 mm1
b = 5.1411 (2) Å T = 296 K
c = 15.9065 (6) Å Block, colourless
β = 94.706 (3)° 0.35 × 0.31 × 0.25 mm
V = 1443.45 (10) Å3

Data collection

Bruker SMART CCD area-detector diffractometer 2124 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.039
φ and ω scans θmax = 27.1°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −22→22
Tmin = 0.887, Tmax = 0.934 k = −6→6
11530 measured reflections l = −20→20
3142 independent reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109 H-atom parameters constrained
S = 1.09 w = 1/[σ2(Fo2) + (0.0451P)2 + 0.0098P] where P = (Fo2 + 2Fc2)/3
3142 reflections (Δ/σ)max < 0.001
208 parameters Δρmax = 0.20 e Å3
0 restraints Δρmin = −0.25 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.33816 (3) 0.66660 (12) 0.39879 (3) 0.04097 (19)
O1 0.08908 (8) 0.2212 (3) 0.51706 (8) 0.0481 (4)
N1 0.28727 (8) 0.7985 (3) 0.54037 (9) 0.0325 (4)
N2 0.21944 (9) 0.4599 (3) 0.46996 (9) 0.0369 (4)
H2 0.1873 0.4489 0.5075 0.044*
N3 0.21516 (9) 0.3013 (3) 0.40283 (9) 0.0341 (4)
N4 0.05982 (9) −0.1170 (3) 0.42364 (9) 0.0387 (5)
H4 0.0225 −0.1842 0.4474 0.046*
C1 0.43038 (11) 1.3281 (4) 0.58140 (12) 0.0359 (5)
H1 0.4504 1.335 0.5292 0.043*
C2 0.45583 (11) 1.5006 (4) 0.64372 (12) 0.0419 (5)
H2A 0.4931 1.6214 0.6335 0.05*
C3 0.42631 (12) 1.4945 (4) 0.72089 (12) 0.0410 (5)
H3 0.4433 1.6113 0.7629 0.049*
C4 0.37150 (12) 1.3150 (4) 0.73568 (12) 0.0415 (5)
H4A 0.3512 1.3113 0.7877 0.05*
C5 0.34649 (11) 1.1406 (4) 0.67384 (12) 0.0376 (5)
H5 0.3098 1.0188 0.6849 0.045*
C6 0.37525 (10) 1.1438 (4) 0.59528 (11) 0.0304 (5)
C7 0.34960 (10) 0.9552 (4) 0.52935 (11) 0.0309 (5)
C8 0.38282 (11) 0.9102 (4) 0.45680 (11) 0.0367 (5)
H8 0.4247 1.0007 0.4406 0.044*
C9 0.27677 (11) 0.6406 (4) 0.47676 (11) 0.0314 (5)
C10 0.16106 (11) 0.1315 (4) 0.39588 (11) 0.0319 (5)
C11 0.14763 (10) −0.0560 (4) 0.32827 (11) 0.0317 (5)
C12 0.18154 (11) −0.1039 (4) 0.25430 (12) 0.0409 (5)
H12 0.222 −0.003 0.2397 0.049*
C13 0.15406 (12) −0.3045 (4) 0.20274 (12) 0.0451 (6)
H13 0.1762 −0.3386 0.1528 0.054*
C14 0.09393 (12) −0.4556 (4) 0.22454 (12) 0.0422 (6)
H14 0.0768 −0.5912 0.1893 0.051*
C15 0.05887 (11) −0.4091 (4) 0.29754 (12) 0.0392 (5)
H15 0.0183 −0.51 0.312 0.047*
C16 0.08638 (10) −0.2078 (4) 0.34775 (11) 0.0319 (5)
C17 0.10069 (11) 0.0896 (4) 0.45404 (12) 0.0362 (5)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0424 (3) 0.0466 (4) 0.0351 (3) −0.0080 (3) 0.0099 (2) −0.0052 (2)
O1 0.0479 (9) 0.0568 (11) 0.0417 (8) −0.0142 (8) 0.0156 (7) −0.0154 (8)
N1 0.0296 (9) 0.0333 (11) 0.0350 (8) −0.0022 (8) 0.0050 (7) −0.0018 (8)
N2 0.0329 (10) 0.0424 (12) 0.0363 (9) −0.0091 (9) 0.0080 (7) −0.0058 (8)
N3 0.0328 (9) 0.0359 (11) 0.0335 (8) −0.0026 (9) 0.0026 (7) −0.0024 (8)
N4 0.0354 (10) 0.0422 (12) 0.0400 (9) −0.0129 (9) 0.0112 (7) −0.0035 (8)
C1 0.0343 (11) 0.0375 (14) 0.0362 (10) −0.0027 (10) 0.0056 (8) 0.0039 (10)
C2 0.0377 (12) 0.0398 (15) 0.0478 (12) −0.0074 (11) 0.0010 (9) −0.0001 (11)
C3 0.0436 (13) 0.0342 (14) 0.0442 (12) −0.0026 (11) −0.0030 (9) −0.0071 (10)
C4 0.0454 (13) 0.0432 (15) 0.0366 (11) −0.0002 (12) 0.0078 (9) −0.0046 (10)
C5 0.0359 (12) 0.0366 (14) 0.0411 (11) −0.0069 (11) 0.0085 (9) −0.0020 (10)
C6 0.0291 (11) 0.0275 (12) 0.0343 (10) 0.0043 (10) 0.0010 (8) 0.0020 (9)
C7 0.0289 (10) 0.0285 (12) 0.0354 (10) −0.0006 (10) 0.0026 (8) 0.0023 (9)
C8 0.0345 (11) 0.0377 (14) 0.0385 (11) −0.0086 (10) 0.0071 (9) −0.0001 (10)
C9 0.0290 (11) 0.0309 (13) 0.0344 (10) −0.0004 (10) 0.0026 (8) 0.0012 (9)
C10 0.0282 (11) 0.0341 (13) 0.0334 (10) −0.0010 (10) 0.0025 (8) 0.0010 (9)
C11 0.0275 (10) 0.0331 (13) 0.0342 (10) 0.0012 (10) 0.0016 (8) −0.0001 (9)
C12 0.0326 (12) 0.0505 (15) 0.0404 (11) −0.0049 (11) 0.0080 (9) −0.0022 (11)
C13 0.0370 (12) 0.0588 (17) 0.0398 (11) 0.0042 (12) 0.0047 (9) −0.0104 (11)
C14 0.0381 (12) 0.0428 (15) 0.0445 (12) 0.0027 (11) −0.0042 (9) −0.0094 (11)
C15 0.0343 (12) 0.0387 (14) 0.0442 (11) −0.0016 (11) 0.0013 (9) −0.0029 (10)
C16 0.0279 (11) 0.0358 (13) 0.0321 (10) 0.0026 (10) 0.0026 (8) −0.0003 (9)
C17 0.0322 (11) 0.0398 (14) 0.0368 (11) −0.0016 (11) 0.0040 (9) −0.0008 (10)

Geometric parameters (Å, º)

S1—C8 1.711 (2) C4—C5 1.377 (3)
S1—C9 1.7203 (19) C4—H4A 0.93
O1—C17 1.240 (2) C5—C6 1.388 (2)
N1—C9 1.299 (2) C5—H5 0.93
N1—C7 1.389 (2) C6—C7 1.472 (3)
N2—N3 1.341 (2) C7—C8 1.358 (2)
N2—C9 1.374 (2) C8—H8 0.93
N2—H2 0.86 C10—C11 1.449 (3)
N3—C10 1.294 (2) C10—C17 1.486 (3)
N4—C17 1.352 (2) C11—C12 1.386 (2)
N4—C16 1.411 (2) C11—C16 1.392 (3)
N4—H4 0.86 C12—C13 1.381 (3)
C1—C2 1.378 (3) C12—H12 0.93
C1—C6 1.391 (3) C13—C14 1.385 (3)
C1—H1 0.93 C13—H13 0.93
C2—C3 1.373 (3) C14—C15 1.382 (3)
C2—H2A 0.93 C14—H14 0.93
C3—C4 1.373 (3) C15—C16 1.372 (3)
C3—H3 0.93 C15—H15 0.93
C8—S1—C9 87.69 (9) C7—C8—S1 111.71 (15)
C9—N1—C7 109.19 (15) C7—C8—H8 124.1
N3—N2—C9 117.83 (15) S1—C8—H8 124.1
N3—N2—H2 121.1 N1—C9—N2 122.80 (17)
C9—N2—H2 121.1 N1—C9—S1 117.03 (15)
C10—N3—N2 118.11 (16) N2—C9—S1 120.17 (14)
C17—N4—C16 111.08 (16) N3—C10—C11 125.96 (17)
C17—N4—H4 124.5 N3—C10—C17 127.60 (18)
C16—N4—H4 124.5 C11—C10—C17 106.44 (17)
C2—C1—C6 121.10 (18) C12—C11—C16 119.27 (18)
C2—C1—H1 119.5 C12—C11—C10 133.79 (19)
C6—C1—H1 119.5 C16—C11—C10 106.93 (16)
C3—C2—C1 120.2 (2) C13—C12—C11 118.73 (19)
C3—C2—H2A 119.9 C13—C12—H12 120.6
C1—C2—H2A 119.9 C11—C12—H12 120.6
C2—C3—C4 119.63 (19) C12—C13—C14 120.71 (19)
C2—C3—H3 120.2 C12—C13—H13 119.6
C4—C3—H3 120.2 C14—C13—H13 119.6
C3—C4—C5 120.37 (19) C15—C14—C13 121.4 (2)
C3—C4—H4A 119.8 C15—C14—H14 119.3
C5—C4—H4A 119.8 C13—C14—H14 119.3
C4—C5—C6 121.01 (19) C16—C15—C14 117.20 (19)
C4—C5—H5 119.5 C16—C15—H15 121.4
C6—C5—H5 119.5 C14—C15—H15 121.4
C5—C6—C1 117.73 (18) C15—C16—C11 122.65 (18)
C5—C6—C7 121.26 (18) C15—C16—N4 128.34 (18)
C1—C6—C7 121.00 (17) C11—C16—N4 109.01 (17)
C8—C7—N1 114.38 (17) O1—C17—N4 126.73 (19)
C8—C7—C6 126.00 (18) O1—C17—C10 126.84 (19)
N1—C7—C6 119.59 (16) N4—C17—C10 106.42 (17)
C9—N2—N3—C10 −179.69 (17) N2—N3—C10—C17 0.7 (3)
C6—C1—C2—C3 −0.6 (3) N3—C10—C11—C12 −3.6 (4)
C1—C2—C3—C4 0.2 (3) C17—C10—C11—C12 176.1 (2)
C2—C3—C4—C5 0.4 (3) N3—C10—C11—C16 177.11 (18)
C3—C4—C5—C6 −0.7 (3) C17—C10—C11—C16 −3.2 (2)
C4—C5—C6—C1 0.3 (3) C16—C11—C12—C13 −1.0 (3)
C4—C5—C6—C7 179.04 (18) C10—C11—C12—C13 179.7 (2)
C2—C1—C6—C5 0.3 (3) C11—C12—C13—C14 −0.2 (3)
C2—C1—C6—C7 −178.37 (17) C12—C13—C14—C15 0.9 (3)
C9—N1—C7—C8 0.9 (2) C13—C14—C15—C16 −0.3 (3)
C9—N1—C7—C6 −177.30 (17) C14—C15—C16—C11 −0.9 (3)
C5—C6—C7—C8 −167.50 (19) C14—C15—C16—N4 178.32 (18)
C1—C6—C7—C8 11.2 (3) C12—C11—C16—C15 1.6 (3)
C5—C6—C7—N1 10.4 (3) C10—C11—C16—C15 −178.92 (17)
C1—C6—C7—N1 −170.89 (17) C12—C11—C16—N4 −177.75 (17)
N1—C7—C8—S1 −0.5 (2) C10—C11—C16—N4 1.7 (2)
C6—C7—C8—S1 177.49 (15) C17—N4—C16—C15 −178.68 (18)
C9—S1—C8—C7 0.06 (16) C17—N4—C16—C11 0.7 (2)
C7—N1—C9—N2 179.57 (17) C16—N4—C17—O1 176.05 (19)
C7—N1—C9—S1 −0.8 (2) C16—N4—C17—C10 −2.7 (2)
N3—N2—C9—N1 −178.05 (17) N3—C10—C17—O1 4.6 (3)
N3—N2—C9—S1 2.4 (2) C11—C10—C17—O1 −175.10 (19)
C8—S1—C9—N1 0.48 (16) N3—C10—C17—N4 −176.72 (18)
C8—S1—C9—N2 −179.92 (16) C11—C10—C17—N4 3.6 (2)
N2—N3—C10—C11 −179.72 (16)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N2—H2···O1 0.86 2.12 2.771 (2) 133
N4—H4···O1i 0.86 2.11 2.922 (2) 158

Symmetry code: (i) −x, −y, −z+1.

Footnotes

Supporting information for this paper is available from the IUCr electronic archives (Reference: LH5732).

References

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  6. Kondratieva, M. L., Pepeleva, A. V., Belskaia, N. P., Koksharov, A. V., Groundwater, P. V., Robeyns, K., Van Meervelt, L., Dehaen, W., Fan, Z. J. & Bakulev, V. A. (2007). Tetrahedron, 63, 3042–3048.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814022715/lh5732sup1.cif

e-70-o1177-sup1.cif (21.2KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814022715/lh5732Isup2.hkl

e-70-o1177-Isup2.hkl (151.1KB, hkl)

Supporting information file. DOI: 10.1107/S1600536814022715/lh5732Isup3.cml

. DOI: 10.1107/S1600536814022715/lh5732fig1.tif

The mol­ecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level. The dashed line indicates an intra­molecular N—H⋯N bond

. DOI: 10.1107/S1600536814022715/lh5732fig2.tif

Part of the crystal structure with hydrogen bonds indicated as dotted lines

CCDC reference: 1029498

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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