Skip to main content
Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1972 Jun;69(6):1587–1591. doi: 10.1073/pnas.69.6.1587

High-Resolution Shadowing of Transfer RNA

Reinhard J Abermann 1, Doju Yoshikami 1,*
PMCID: PMC426754  PMID: 4504373

Abstract

High-resolution shadowing with metals that melt at high temperatures was used to study macromolecules. Molecules of transfer RNA shadowed with tantalum-tungsten are readily visualized in an electron microscope. Mounting procedures for tRNA were perfected that reproducibly gave uniform distributions of both monomeric and dimeric tRNA particles, and allowed a statistical assessment of their gross shapes and sizes. Monomeric tRNA yielded a fairly homogeneous population of rod-shaped particles, with axial dimensions of about 40 × 85 Å. Dimers of yeast alanine tRNA held together by hydrogen bonds and dimers constructed by covalent linkage of the amino-acid acceptor (3′-) termini of monomers both gave slightly more heterogeneous populations of particles. Yet, their structures were also basically rod shaped, with their lengths ranging to about twice that of the monomer; this result indicates an end-to-end arrangement of the monomeric units within both dimers. These results suggest that the amino-acid acceptor terminus and the anticodon region are at the ends of the rod-shaped, dehydrated tRNA monomer visible by electron microscopy, consistent with the generally accepted view of tRNA structure in solution suggested by other workers using other methods. This study demonstrates that high-resolution shadowing with tantalum-tungsten provides a means to examine the three-dimensional structures of relatively small biological macromolecules.

Keywords: electron-beam evaporator, tRNA dimer, electron microscopy, tantalum-tungsten, yeast tRNA

Full text

PDF
1587

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bachmann L., Abermann R., Zingsheim H. P. Hochauflösende Gefrierätzung. Histochemie. 1969;20(2):133–142. doi: 10.1007/BF00268707. [DOI] [PubMed] [Google Scholar]
  2. Beardsley K., Cantor C. R. Studies of transfer RNA tertiary structure by singlet-singlet energy transfer. Proc Natl Acad Sci U S A. 1970 Jan;65(1):39–46. doi: 10.1073/pnas.65.1.39. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Cramer F., Doepner H., Haar F V. D., Schlimme E., Seidel H. On the conformation of transfer RNA. Proc Natl Acad Sci U S A. 1968 Dec;61(4):1384–1391. doi: 10.1073/pnas.61.4.1384. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Fröholm L. O., Olsen B. R. A conformational model of serine transfer RNA proposed on the basis of electron microscopy. FEBS Lett. 1969 May;3(3):182–184. doi: 10.1016/0014-5793(69)80129-8. [DOI] [PubMed] [Google Scholar]
  5. Levitt M. Detailed molecular model for transfer ribonucleic acid. Nature. 1969 Nov 22;224(5221):759–763. doi: 10.1038/224759a0. [DOI] [PubMed] [Google Scholar]
  6. Loehr J. S., Keller E. B. Dimers of alanine transfer RNA with acceptor activity. Proc Natl Acad Sci U S A. 1968 Nov;61(3):1115–1122. doi: 10.1073/pnas.61.3.1115. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Ottensmeyer F. P. Macromolecular finestructure by dark field electron microscopy. Biophys J. 1969 Sep;9(9):1144–1149. doi: 10.1016/S0006-3495(69)86441-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Pilz I., Kratky O., Cramer F., von der Haar F., Schlimme E. On the conformation of phenylalanine specific transfer RNA. Studies on size and shape of the molecule by x-ray small angle scattering. Eur J Biochem. 1970 Sep;15(3):401–409. doi: 10.1111/j.1432-1033.1970.tb01021.x. [DOI] [PubMed] [Google Scholar]
  9. Simpson R. W., Hauser R. E. Structural components of vesicular stomatitis virus. Virology. 1966 Aug;29(4):654–667. doi: 10.1016/0042-6822(66)90289-3. [DOI] [PubMed] [Google Scholar]
  10. Yoshikami D., Keller E. B. Chemical modification of the fluorescent base in phenylalanine transfer ribonucleic acid. Biochemistry. 1971 Jul 20;10(15):2969–2976. doi: 10.1021/bi00791a027. [DOI] [PubMed] [Google Scholar]
  11. Zamecnik P. C., Stephenson M. L., Scott J. F. PARTIAL PURIFICATION OF SOLUBLE RNA. Proc Natl Acad Sci U S A. 1960 Jun;46(6):811–822. doi: 10.1073/pnas.46.6.811. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Proceedings of the National Academy of Sciences of the United States of America are provided here courtesy of National Academy of Sciences

RESOURCES