Abstract
Mitochondrial DNA from mouse and HeLa cells is nicked by alkali and chick-embryo ribonuclease H. It has been concluded that ribonucleotides are present in the closed-circular duplex. A comparative study of the scission rates at pH 13.0 of RNA and of mitochondrial DNAs indicates that there are no more than 10 ribonucleotides in the major fraction of the mitochondrial DNAs.
Keywords: ribonuclease H, alkali hydrolysis of DNA
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- Berkower I., Leis J., Hurwitz J. Isolation and characterization of an endonuclease from Escherichia coli specific for ribonucleic acid in ribonucleic acid-deoxyribonucleic acid hybrid structures. J Biol Chem. 1973 Sep 10;248(17):5914–5921. [PubMed] [Google Scholar]
- Blair D. G., Sherratt D. J., Clewell D. B., Helinski D. R. Isolation of supercoiled colicinogenic factor E 1 DNA sensitive to ribonuclease and alkali. Proc Natl Acad Sci U S A. 1972 Sep;69(9):2518–2522. doi: 10.1073/pnas.69.9.2518. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Borst P. Mitochondrial nucleic acids. Annu Rev Biochem. 1972;41:333–376. doi: 10.1146/annurev.bi.41.070172.002001. [DOI] [PubMed] [Google Scholar]
- Borst P., Ruttenberg G. J. Mitochondrial DNA. IV. Interaction of ribopolynucleotides with the complementary strands of chick-liver mitochondrial DNA. Biochim Biophys Acta. 1969 Oct 22;190(2):391–405. doi: 10.1016/0005-2787(69)90089-6. [DOI] [PubMed] [Google Scholar]
- Brutlag D., Schekman R., Kornberg A. A possible role for RNA polymerase in the initiation of M13 DNA synthesis. Proc Natl Acad Sci U S A. 1971 Nov;68(11):2826–2829. doi: 10.1073/pnas.68.11.2826. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Clayton D. A., Smith C. A., Jordan J. M., Teplitz M., Vinograd J. Occurrence of complex mitochondrial DNA in normal tissues. Nature. 1968 Dec 7;220(5171):976–979. doi: 10.1038/220976a0. [DOI] [PubMed] [Google Scholar]
- GAREN A., LEVINTHAL C. A fine-structure genetic and chemical study of the enzyme alkaline phosphatase of E. coli. I. Purification and characterization of alkaline phosphatase. Biochim Biophys Acta. 1960 Mar 11;38:470–483. doi: 10.1016/0006-3002(60)91282-8. [DOI] [PubMed] [Google Scholar]
- Grossman L. I., Cryer D. R., Goldring E. S., Marmur J. The petite mutation in yeast. 3. Nearest-neighbor analysis of mitochondrial DNA from normal and mutant cells. J Mol Biol. 1971 Dec 28;62(3):565–575. doi: 10.1016/0022-2836(71)90156-2. [DOI] [PubMed] [Google Scholar]
- Hill W. E., Fangman W. L. Scission of Escherichia coli deoxyribonucleic acid in alkali. Biochemistry. 1973 Apr 24;12(9):1772–1774. doi: 10.1021/bi00733a017. [DOI] [PubMed] [Google Scholar]
- Kasamatsu H., Robberson D. L., Vinograd J. A novel closed-circular mitochondrial DNA with properties of a replicating intermediate. Proc Natl Acad Sci U S A. 1971 Sep;68(9):2252–2257. doi: 10.1073/pnas.68.9.2252. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Keller W., Crouch R. Degradation of DNA RNA hybrids by ribonuclease H and DNA polymerases of cellular and viral origin. Proc Natl Acad Sci U S A. 1972 Nov;69(11):3360–3364. doi: 10.1073/pnas.69.11.3360. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Miyaki M., Koide K., Ono T. RNase and alkali sensitivity of closed circular mitochondrial DNA of rat ascites hepatoma cells. Biochem Biophys Res Commun. 1973 Jan 23;50(2):252–258. doi: 10.1016/0006-291x(73)90833-4. [DOI] [PubMed] [Google Scholar]
- Penman S., Vesco C., Penman M. Localization and kinetics of formation of nuclear heterodisperse RNA, cytoplasmic heterodisperse RNA and polyribosome-associated messenger RNA in HeLa cells. J Mol Biol. 1968 May 28;34(1):49–60. doi: 10.1016/0022-2836(68)90234-9. [DOI] [PubMed] [Google Scholar]
- Pikó L., Blair D. G., Tyler A., Vinograd J. Cytoplasmic DNA in the unfertilized sea urchin egg: physical properties of circular mitochondrial DNA and the occurrence of catenated forms. Proc Natl Acad Sci U S A. 1968 Mar;59(3):838–845. doi: 10.1073/pnas.59.3.838. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Robberson D., Aloni Y., Attardi G. Electron microscopic visualization of mitochondrial RNA-DNA hybrids. J Mol Biol. 1971 Jan 28;55(2):267–270. doi: 10.1016/0022-2836(71)90196-3. [DOI] [PubMed] [Google Scholar]
- Rosenkranz H. S. RNA in coliphage T5. Nature. 1973 Mar 30;242(5396):327–329. doi: 10.1038/242327a0. [DOI] [PubMed] [Google Scholar]
- Speyer J. F., Chao J., Chao L. Ribonucleotides covalently linked to deoxyribonucleic acid in T4 bacteriophage. J Virol. 1972 Nov;10(5):902–908. doi: 10.1128/jvi.10.5.902-908.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sugino A., Okazaki R. RNA-linked DNA fragments in vitro. Proc Natl Acad Sci U S A. 1973 Jan;70(1):88–92. doi: 10.1073/pnas.70.1.88. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Vinograd J., Lebowitz J., Radloff R., Watson R., Laipis P. The twisted circular form of polyoma viral DNA. Proc Natl Acad Sci U S A. 1965 May;53(5):1104–1111. doi: 10.1073/pnas.53.5.1104. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Vinograd J., Lebowitz J., Watson R. Early and late helix-coil transitions in closed circular DNA. The number of superhelical turns in polyoma DNA. J Mol Biol. 1968 Apr 14;33(1):173–197. doi: 10.1016/0022-2836(68)90287-8. [DOI] [PubMed] [Google Scholar]
- Wickner W., Brutlag D., Schekman R., Kornberg A. RNA synthesis initiates in vitro conversion of M13 DNA to its replicative form. Proc Natl Acad Sci U S A. 1972 Apr;69(4):965–969. doi: 10.1073/pnas.69.4.965. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wong-Staal F., Mendelsohn J., Goulian M. Ribonucleotides in closed circular mitochondrial DNA from HeLa cells. Biochem Biophys Res Commun. 1973 Jul 2;53(1):140–148. doi: 10.1016/0006-291x(73)91412-5. [DOI] [PubMed] [Google Scholar]