Skip to main content
Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1973 Dec;70(12 Pt 1-2):3626–3630. doi: 10.1073/pnas.70.12.3626

Nucleotide Modification In Vitro of the Precursor of Transfer RNATyr of Escherichia coli

K P Schaefer 1,*, S Altman 1,, D Söll 1,
PMCID: PMC427294  PMID: 4587257

Abstract

Certain nucleotides in precursor RNA of tRNATyr of Escherichia coli were modified in vitro with a preparation of partially purified E. coli enzyme containing ribothymidine- and pseudouridine-forming activity. The only nucleotides modified in vitro are the same as those found modified in mature tRNA. The best substrate for these modifying enzymes is the RNase P cleavage product of the precursor RNA, which contains the mature tRNA sequence. Of the two pseudouridines found in mature tRNA, one (in the TΨC sequence) can be formed in intact precursor RNA. The other (in the anticodon stem) can only be formed in the cleaved precursor RNA. The presence of modified nucleotides in the precursor RNA does not enhance its rate of cleavage by RNase P.

Keywords: ribothymidine, pseudouridine biosynthesis; cleaved precursor substrate

Full text

PDF
3626

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Allaudeen H. S., Yang S. K., Söll D. Leucine tRNA(1) from HisT mutant of Salmonella typhimurium lacks two pseudouridines. FEBS Lett. 1972 Dec 1;28(2):205–208. doi: 10.1016/0014-5793(72)80713-0. [DOI] [PubMed] [Google Scholar]
  2. Altman S., Smith J. D. Tyrosine tRNA precursor molecule polynucleotide sequence. Nat New Biol. 1971 Sep 8;233(36):35–39. doi: 10.1038/newbio233035a0. [DOI] [PubMed] [Google Scholar]
  3. Anderson K. W., Smith J. D. Still more mutant tyrosine transfer ribonucleic acids. J Mol Biol. 1972 Aug 28;69(3):349–356. doi: 10.1016/0022-2836(72)90249-5. [DOI] [PubMed] [Google Scholar]
  4. Bartz J. K., Söll D. N 6 -( 2 -isopentenyl) adenosine: biosynthesis in vitro in transfer RNA by an enzyme purified from Escherichia coli. Biochimie. 1972;54(1):31–39. doi: 10.1016/s0300-9084(72)80035-x. [DOI] [PubMed] [Google Scholar]
  5. Björk G. R., Isaksson L. A. Isolation of mutants of Escherichia coli lac king 5-methyluracil in transfer ribonucleic acid or 1-methylguanine in ribosomal RNA. J Mol Biol. 1970 Jul 14;51(1):83–100. doi: 10.1016/0022-2836(70)90272-x. [DOI] [PubMed] [Google Scholar]
  6. Burdon R. H. Ribonucleic acid maturation in animal cells. Prog Nucleic Acid Res Mol Biol. 1971;11:33–79. doi: 10.1016/s0079-6603(08)60325-6. [DOI] [PubMed] [Google Scholar]
  7. Fittler F., Hall R. H. Selective modification of yeast seryl-t-RNA and its effect on the acceptance and binding functions. Biochem Biophys Res Commun. 1966 Nov 22;25(4):441–446. doi: 10.1016/0006-291x(66)90225-7. [DOI] [PubMed] [Google Scholar]
  8. Gefter M. L., Russell R. L. Role modifications in tyrosine transfer RNA: a modified base affecting ribosome binding. J Mol Biol. 1969 Jan 14;39(1):145–157. doi: 10.1016/0022-2836(69)90339-8. [DOI] [PubMed] [Google Scholar]
  9. Goodman H. M., Abelson J. N., Landy A., Zadrazil S., Smith J. D. The nucleotide sequences of tyrosine transfer RNAs of Escherichia coli. Eur J Biochem. 1970 Apr;13(3):461–483. doi: 10.1111/j.1432-1033.1970.tb00950.x. [DOI] [PubMed] [Google Scholar]
  10. Johnson L., Hayashi H., Söll D. Isolation and properties of a transfer ribonucleic acid deficient in ribothymidine. Biochemistry. 1970 Jul 7;9(14):2823–2831. doi: 10.1021/bi00816a011. [DOI] [PubMed] [Google Scholar]
  11. Loewen P. C., Khorana H. G. Studies on polynucleotides. CXXII. The dodecanucleotide sequence adjoining the C-C-A end of the tyrosine transfer ribonucleic acid gene. J Biol Chem. 1973 May 25;248(10):3489–3499. [PubMed] [Google Scholar]
  12. McClain W. H., Guthrie C., Barrell B. G. Eight transfer RNAs induced by infection of Escherichia coli with bacteriophage T4. Proc Natl Acad Sci U S A. 1972 Dec;69(12):3703–3707. doi: 10.1073/pnas.69.12.3703. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Robertson H. D., Altman S., Smith J. D. Purification and properties of a specific Escherichia coli ribonuclease which cleaves a tyrosine transfer ribonucleic acid presursor. J Biol Chem. 1972 Aug 25;247(16):5243–5251. [PubMed] [Google Scholar]
  14. Rosenbaum N., Gefter M. L. Delta 2 -isopentenylpyrophosphate: transfer ribonucleic acid 2 -isopentenyltransferase from Escherichia coli. Purification and properties of the enzyme. J Biol Chem. 1972 Sep 25;247(18):5675–5680. [PubMed] [Google Scholar]
  15. Singer C. E., Smith G. R., Cortese R., Ames B. N. [Mutant tRNA His ineffective in repression and lacking two pseudouridine modifications]. Nat New Biol. 1972 Jul 19;238(81):72–74. doi: 10.1038/newbio238072a0. [DOI] [PubMed] [Google Scholar]
  16. Smith J. D., Barnett L., Brenner S., Russell R. L. More mutant tyrosine transfer ribonucleic acids. J Mol Biol. 1970 Nov 28;54(1):1–14. doi: 10.1016/0022-2836(70)90442-0. [DOI] [PubMed] [Google Scholar]
  17. Wilson J. H., Kim J. S., Abelson J. N. Bacteriophage T4 transfer RNA. 3. Clustering of the genes for the T4 transfer RNA's. J Mol Biol. 1972 Nov 28;71(3):547–556. doi: 10.1016/s0022-2836(72)80022-6. [DOI] [PubMed] [Google Scholar]

Articles from Proceedings of the National Academy of Sciences of the United States of America are provided here courtesy of National Academy of Sciences

RESOURCES