Abstract
The cellulose microfibril has more subtlety than is commonly recognized. Details of its structure may influence how matrix polysaccharides interact with its distinctive hydrophobic and hydrophilic surfaces to form a strong yet extensible structure. Recent advances in this field include the first structures of bacterial and plant cellulose synthases and revised estimates of microfibril structure, reduced from 36 to 18 chains. New results also indicate that cellulose interactions with xyloglucan are more limited than commonly believed, whereas pectin-cellulose interactions are more prevalent. Computational results indicate that xyloglucan binds tightest to the hydrophobic surface of cellulose microfibrils. Wall extensibility may be controlled at limited regions (“biomechanical hotspots”) where cellulose-cellulose contacts are made, potentially mediated by trace amounts of xyloglucan.
Introduction
Our concepts of plant cell wall structure, its synthesis and its dynamics are rapidly changing. Partly this is a result of accelerated identification of genes underlying the synthesis of cell wall components, e.g. [1-6], some of which are formidably complex multi-domain structures such as a proteoglycan covalently linked to pectin and xylan chains [7*]. Gene identification facilitates the identification of mutants, sometimes with phenotypes that surprise us, either because of lack of phenotype when current models demand one, or because of unanticipated phenotypes. Surprises lead to new insights about how a system functions. Gene identification has also led to fluorescent versions of wall-related proteins, allowing researchers to track their location and movement by confocal microscopy. This has elegantly revealed the dynamics of cellulose synthesis and provided a new means to identify components associated with the cellulose synthesis complex (CSC) [8, 9*,10]. Our ability to monitor specific matrix polysaccharides is more limited. While antibodies and carbohydrate binding modules have proved informative [11,12], epitope masking can be problematic [13]. Click labeling of pectins has given insights into pectin secretion and its aftermath [14*] while fluorescent monolignols enable new ways to monitor the process of lignification [15*,16].
Another key contributor to recent progress is use of advanced physical methods to probe whole cell walls. Defining the covalent structure of isolated cell wall components and the underlying genes is only the beginning of a molecular understanding of cell wall structure and its dynamic properties. We need to elucidate the interactions among wall components at a level of detail that X-ray crystallography can provide, but because walls lack crystalline order, other physical methods have to be used, sometimes in combination with computational approaches, e.g. [17*]. The goal is to build better cell wall models that go beyond merely illustrating prevailing concepts. Useful models provide testable predictions that lead to further insights into cell wall structure.
The following minireview summarizes selected recent advances in the construction of the primary cell wall. Regrettably, space limitations precluded discussion of many important advances, such as recent insights into the construction of the Casperian strip [18**-21], paradoxical results linking pectin demethylation with wall softening during morphogenesis at the shoot apical meristem [22-26], and new insights into lignin polymerization [27,28*], to name but a few recent developments related to cell wall biology.
Cellulose microfibril structure
Cellulose was first isolated and named nearly two centuries ago by Anselme Payen. It has vast economic value in the form of paper, textiles, wood products, polymers, animal feed, and biomass for energy uses, so it may come as a surprise to many biologists to learn that structural features of the cellulose microfibril, as well as its mechanism of synthesis, remain subjects of continuing research and debate. The cellulose microfibril is composed of numerous linear β1,4-linked glucan chains synthesized in parallel by protein complexes embedded in the plasma membrane. The chains are packed into an ordered microfibril of indefinite length and uncertain cross sectional area and shape. These geometrical features are important determinants of the physical properties of cellulose and its interaction with matrix components (Figure 1). For instance, the cellulose microfibril has distinct hydrophobic and hydrophilic surfaces which are thought to bind xyloglucan [29*], xylan [30*], and lignin [31] with different affinities and which are attacked by lytic enzymes and chemical treatments in different ways. Hopes to understand the molecular architecture of the cell wall and to develop realistic computational models of it depend on these microfibril features.
In recent years the microfibril has most often been represented as a hexagonal arrangement of 36 chains, e.g. [17*,32], but this is partly a rough guess based on estimates of microfibril diameter and partly speculation derived from the hexameric appearance of the ‘particle rosettes’ (the CSC) seen in TEM replica images of freeze-fractured plasma membranes. Like the Babylonian predilection for base-60 numerology (which is why an hour is divided into 60 minutes), the number of chains in the cellulose microfibril is often cited as 6 × 6, an idea stemming from the hexameric appearance of CSCs, the seductive appeal of a ‘hexamer of hexamers’ concept, and the limited resolution of traditional methods for giving precise chain numbers in a microfibril of ∼3 nm width. Technical improvements have steadily decreased published estimates of microfibril size and application of advanced physical methods, combined with modeling, have recently led to yet smaller estimates, in the range of 18-24 chains [33]. Thomas et al. [34*] used wide-angle x-ray scattering (WAXS), small-angle neutron scattering (SANS), solid-state nuclear magnetic resonance (ssNMR), polarized FTIR and other methods to examine cellulose isolated from celery collenchyma. They concluded that 18-24 chain models were the likeliest fit to the results, with a slight nod towards a 24-chain model. They also found evidence for microfibril aggregation. The experimental results are also compatible with chain numbers in between 18 and 24 (e.g. 20 or 21), but the appearance of hexameric rosettes biases models towards chain numbers that are multiples of six. Newman et al. [35*] analyzed cellulose from primary cell walls of mung bean by synchrotron WAXS. The results, when combined with computational diffractograms and published ssNMR data, best fit an 18-chain model in which microfibrils assumed a variety of cross sectional shapes and occasionally ‘twinned’, meaning regions of two microfibrils coalesced. These twinned regions may be the aggregated regions noted by Thomas et al. [34] and are perhaps related to the ‘biomechanical hotspots’ or regions of microfibril contact in primary cell walls, discussed below.
One consequence of an 18-chain microfibril is that the individual particles in the hexameric rosette could contain as few as three cellulose synthases (CESAs). This would neatly fit genetic results indicating that concurrent expression of three different CESA genes is normally needed for cellulose synthesis and, to add icing on the cake, it would provide a simple mechanism for self assembly of CESAs into a trimeric complex (=one particle) and then into rosettes (Figure 2) [35*].
Cellulose microfibril synthesis & guidance
Major advances in understanding the mechanism of cellulose chain polymerization were recently achieved with the astonishing solution of a Rhodobacter cellulose synthase by X-ray crystallography [36**] and computational modeling of the catalytic domain of plant CESAs [37, 38*,39]. The Rhodobacter structure, composed of two proteins, includes the catalytic domain, the transmembrane domain and the intra-protein tunnel that provides a low-energy pathway for translocating the growing glucan chain to the external membrane surface from the cytoplasmic side, where the catalytic site transfers a glucose residue from UDP-glucose to the reducing end of the glucan. Electron density compatible with an 18-residue glucan was found within the protein tunnel – a very sweet result, as it enabled structural details of the translocation mechanism to be discerned. Compared with the long and troubled history of unstable and inactive CESA preparations from plant tissues, it is a remarkable and fortunate result that the two proteins making the Rhodobacter complex proved sufficient for cellulose synthesis in vitro [40]. Based on the structure, a plausible catalytic scheme was presented in which the newly-added glucose residue would rotate 180° between each step in the synthesis, shaping the chain into a linear two-fold helix for translocation through the tunnel. In plants multiple chains coalesce outside the plasma membrane to form a microfibril, but Rhodobacter is not known to form microfibrils. This protein structure lays to rest previous debate about the number of active sites needed for glucan polymerization [41]; one is evidently sufficient.
Prior to publication of the Rhodobacter structure, Sethaphong et al. [38*] developed a computational model of the catalytic domain of a plant CESA (Figure 2a). Despite low sequence similarity, the two protein folds showed structural congruence, indicating functional and evolutionary similarity. Several CESA missense mutations were mapped to protein regions close to the catalytic site. Unlike bacterial homologs, plant CESAs also contain distinctive regions named P-CR and CSR that may participate in formation of the multimeric CSC. These regions were modeled as loops external to the catalytic fold, forming potential interfaces between CESAs. Using protein threading based on the Rhodobacter structure, Olek et al. [39] likewise developed a CESA model, but their approach yielded wildly varying PCR and CSR structures. They reported successful recombinant expression of a CESA catalytic domain that formed homodimers in vitro. SAXS data were interpreted to mean the monomeric protein formed a warped boomerang-shaped structure with the catalytic domain in the middle and the P-CR and CSR domains at opposite poles, differing from the prediction of Sethaphong et al. [38]. Further experimental work will be needed to decide which of these predicted structures is closer to reality and whether CESAs indeed form a homodimer within functional CSCs, as predicted by Olek et al. [39]. A dimer-based structure would almost certainly mean six CESAs per particle or 36 CESAs per rosette. If 18 is the correct number of chains in the microfibril as produced by a single CSC, then half the CESAs would be inactive at any given instant. There is evidence that microfibril diameter may vary developmentally and across species [35,42-44], so a CSC with an ability to synthesize microfibrils of variable chain number would provide a creative solution to what is otherwise a vexing problem: how to account for variable microfibril diameters with a common CSC structure? Perhaps with a 36-cylinder engine that idles some cylinders. An alternative possibility is that microfibril diameters vary by other, post-synthetic mechanisms, e.g. by trimming of nascent microfibrils by endoglucanases [9,10,45] or by microfibril aggregation.
To understand the initial stages of microfibril formation (largely terra incognita), Haigler et al. [42] combined molecular dynamics simulation (MDS) with freeze-fracture TEM of Zinnia mesophyll cells transdifferentiating into tracheary elements. MDS was limited to 6 chains and did not include water in the simulation, so it must be regarded as a limited first step in approaching this problem. The fibrils were highly disordered, probably as a result of the limited number of chains used for the simulation. Other work indicates that 6 chains may be too few to form a stable structure resembling native cellulose [46]. One novel result to emerge from the MDS was the accumulation of noncrystallized glucan chains at the outer surface of the CSC prior to formation of a protofibril. TEM images showed structures interpreted as nascent microfibrils, with diameters varying from <2 to >5 nm and at their base were swollen regions interpreted as pools of disorganized glucans. The authors point out that such pools would buffer between the crystallization process and the concerted polymerization process by the 18-36 CESAs that contribute to the microfibril. It is unclear how a pool of disorganized glucan would spontaneously form the precise crystalline form (known as cellulose Iβ) that is dominant in plant cell walls. Crystallization may be a spontaneous process [44] or possibly it is a guided process in which cellulose-binding proteins such as CHITANASE-LIKE1 [47] and BRITTLE CULM1 [48] facilitate microfibril assembly.
Although cellulose is often described as a crystalline structure, primary wall cellulose has low crystallinity. This stems in part from the thinness of the microfibril and the conformational disorder of surface chains, which are more dynamic and flexible than the more-constrained internal chains, and in part from sloppy packing of internal chains [34]. The internal disorder may arise from twisting of the microfibril and the resulting need to periodically relieve the internal stress [46]. It may also arise from entrapment of xyloglucan within the microfibril – an attractive idea that dates from the 1980's [49] but still has only circumstantial support. A recent study confirmed the selective effect of xyloglucan on the crystallinity of cellulose formed by Gluconoacetobacter [50]. This study detected crystalline cellulose by SFG (sum frequency generation) spectroscopy, a nonlinear optical method that can provide information about the crystallinity and meso-scale ordering of microfibrils in intact cell walls [51]. Because SFG is selective for crystalline cellulose, whole cell walls may be measured without the need to extract lignin, hemicelluloses and other wall materials that interfere with most common physical methods of cell wall analysis. However, primary cell walls typically give rather weak SFG signals, probably because of low crystallinity and high dispersion of cellulose microfibrils compared with the dense, parallel packing of cellulose in secondary cell walls.
Cellulose alignment in the wall
Microfibril orientation has long been considered a major determinant of the directionality of cell growth [52*-54], and microtubules have been implicated in microfibril alignment since Green's seminal study showing that microtubule manipulations affect cellulose orientation [55], but the mechanism has been uncertain. Recent advances have identified a physical linker between CESA and cortical microtubules: it is CSI1 [56,57*], a large protein (2151 amino acids) that binds to CESA and to microtubules. Given its large size and multiple domains, CSI1 may have other functions as well [58]. Growth of the csi1 mutant is reduced and cells in the stem become twisted [59]. Although microtubule guidance is lost in the csi1 mutant, the CESA trajectories in the plasma membrane do not become random, but tend toward a transverse orientation, suggesting another, as yet unknown, guidance system may operate in the absence of functional CSI1.
Mechanical coupling of cellulose microfibrils by xyloglucan and pectins?
Since the early 1970's xyloglucan has been considered an essential structural component whose metabolism is central to concepts of wall loosening and induction of growth by auxin and other hormones [49]. Its putative role in wall structure and mechanics is emphasized in depictions of cell walls as nearly parallel arrays of cellulose microfibrils tethered together by long, extended xyloglucan chains that coat the cellulose surface (to prevent cellulose-cellulose contacts) and mechanically link adjacent microfibrils together. This tethered network model, which has held sway for more than two decades, depicts several untested aspects of cell wall architecture. Its validity was seriously shaken by the discovery that an Arabidopsis double mutant (xxt1/xxt2) lacked detectable xyloglucan, yet displayed only relatively minor growth reduction [60]. XXT1 and XXT2 are xylosyl transferases that add xylose side chains to the glucan backbone of xyloglucan. The minor phenotype was shocking because xyloglucan was considered a central and essential structural element of primary walls. Hypocotyls from the xxt1/xxt2 line were ∼30% weaker than WT (measured as breaking strength or as stiffness). Yet despite this mechanically weaker condition, the cell walls were less extensible in creep assays [61]. Cell walls from the mutant displayed reduced sensitivity to wall loosening by α-expansins, accounting for the reduced growth and extensibility (creep) of the cell walls. Moreover the walls of the mutant were more sensitive to loosening by treatments that loosened pectins and xylans, indicating that other components of the matrix assumed a larger mechanical role in the xyloglucan-deficient walls. This mutant has prompted a reappraisal of the role of xyloglucan in primary wall structure.
Analyses of WT Arabidopsis cell walls by multidimensional ssNMR indicate that only a small proportion of the cellulose surface is in contact with xyloglucan [62,63], in contrast to the common view that most of the cellulose surface is coated with xyloglucan and prevents direct cellulose-cellulose contacts [49]. Instead of xyloglucan, pectic sugars (most likely from rhamnogalacturonan-I) were close to the cellulose surface (within spin diffusion distance, ∼1 nm). These and other results have led to the proposal that pectins serve as mechanical tethers between microfibrils [62,64], in parallel with xyloglucan. One difficulty with this notion is that the acidic pectic polymers do not bind appreciably to cellulose surfaces in vitro [65], so they would seem to make feeble tethers. Moreover, treatments that lyse or solubilize pectins cause negligible wall loosening in WT Arabidopsis cell wall, as measured by induction of cell wall creep [61]. The pectin-cellulose proximity detected by ssNMR might result from molecular crowding within the cell wall. Alternatively, the neutral pectin side chains of rhamnogalacturonan-I (i.e. galactans and arabinans), which display intermediate binding affinity to cellulose in vitro [65,66], might draw rhamnogalacturonan-1 close to cellulose. However, such direct interactions have not yet been demonstrated by ssNMR or other methods. Thus the hypothesis of mechanical tethering by pectins needs further testing.
Pectins are the most dynamic (mobile) polymers in the wall and their hydrophilic character likely helps to reduce direct cellulose-cellulose contacts, lubricating microfibril motions as the cell wall expands. Based on ssNMR spin diffusion, ∼50% of the cellulose surface makes contact with pectin [67]. Partial extraction of pectin from Arabidopsis cell walls rigidified the remaining matrix polysaccharides [67] and greatly slowed magnetic spin transfer from water to cellulose [68]. The latter result was attributed to water stabilization by pectins (spin transfer is reduced by rapid motions of water). These results are consistent with a picture of cellulose intimately coated by pectins (about half of its surface area, perhaps only by weak interactions) and limited coating by xyloglucan.
Unsolved issues include the location of the xyloglucan (it comprises ∼20% of the Arabidopsis wall) and why, with its high affinity for cellulose surfaces, it does not coat more of the cellulose surfaces. One possibility is that xyloglucan assumes a random coil shape [69], rather than the extended conformation commonly depicted. Upon secretion, a coiled xyloglucan may immediately bind to the first bare cellulose surface it contacts, resulting in limited contact with cellulose, but extensive contact with the mobile pectins, consistent with ssNMR results [63]. In-vitro experiments indicate xyloglucan binding to cellulose is irreversible, so an anchored xyloglucan chain might have little ability to reposition itself, particularly in view of dense crowding by pectins and other components in the wall.
These considerations highlight the fact that some of our conventional ideas about cell wall structure and assembly are influenced by the results of in-vitro binding experiments in which dilute solutions of polymers are allowed to bind to cellulose surfaces. In contrast, the living cell wall is assembled in organized layers (lamellae) in a confined space where polymer crowding, entanglements, entrapment, competing interactions, and enzymatic modifications may greatly influence the interactions among wall components.
Xyloglucan tethering, direct cellulose contacts and biomechanical hotspots
The concept of microfibril tethering by xyloglucan was tested by an enzymatic approach in which cell walls were clamped in a constant-force extensometer and treated with a series of GH12 endoglucanases with differing substrate specificities [70*]. Xyloglucan-specific endoglucanase digested much of the xyloglucan from the wall, but did not weaken the walls. Only enzymes able to cut both xyloglucan and cellulose were effective in loosening the wall. Remarkably, a mixture of cellulose-specific and xyloglucan-specific endoglucanases did not loosen the cell wall. The proposed explanation of these enigmatic results is the ‘biomechanical hotspot’ concept: that wall extension is controlled at limited sites of close contact between cellulose microfibrils, mediated by xyloglucan chains. Xyloglucans may be intertwined with cellulose chains in these inaccessible sites, forming an amalgam that requires an enzyme with both cellulase and xyloglucanase activity to digest. Alternatively xyloglucan in these sites may be rendered inaccessible by forming a tight monomolecular junction between two or more cellulose microfibrils. Only enzymes that could digest both cellulose and xyloglucan would be able to progressively digest the intermingled or appressed xyloglucan-cellulose chains that bonded the microfibrils together. This concept was tested in a computational model in which xyloglucan was configured as a bonding agent between two cellulose microfibrils [29*]. The result showed that a tight sandwich-like structure was formed between the hydrophobic surfaces of microfibrils. This junction was energetically stable and strong enough to withstand substantial force when the microfibrils were pulled apart, strong enough to withstand the tensile forces generated by cell turgor pressure.
Cells walls lacking xyloglucan showed diminished creep responses to endoglucanases and to expansins as well, leading to the suggestion that these ‘biomechanical hotspots’ are also targets of expansin action [70]. Expansins are wall-loosening proteins that induce cell wall extension without lytic breakdown of the wall components [71]. Expansin binding sites in complex Arabidopsis walls were recently characterized by ssNMR [72*] with use of method called dynamic nuclear polarization to increase sensitivity. Interpretation was aided by use of expansin mutants with altered binding to cellulose and pectin. The results showed the effective target to be cellulose with a slightly smaller NMR shift compared with bulk cellulose, indicating a slightly different configuration of the internal chains. The expansin binding site was also in close proximity to xyloglucan. This structure is remarkably similar to the proposed site of endoglucanases-catalyzed wall loosening, i.e. the biomechanical hotspots.
According to the hotspot hypothesis, cellulose microfibrils are linked with one another via direct load-bearing junctions, mediated by intimate bonding by xyloglucan in some scenarios. This idea is at odds with common depictions of primary cell walls which show well-spaced microfibrils kept apart by matrix polysaccharides. The view that microfibrils do not make direct contact may stem from an early depiction of the primary cell wall by Frey-Wyssling [73]. This aspect of wall structure was incorporated into the influential molecular model of cell walls of sycamore suspension cell cultures by Keegstra et al. [74] and was also included into most subsequent models. In contrast to these depictions of wall structure, many high-resolution micrographs of primary cell walls show aggregation or bundling of microfibrils. In some cases it might be argued that microfibril aggregation occurs because of extraction or dehydration of the sample in preparation for imaging [75], but in a recent study such technical problems were avoided by use of atomic force microscopy (AFM) to image the newly-deposited surface of unextracted, never-dried walls under water [76]. This AFM-based method enhances microfibril visibility, perhaps because the AFM tip passes through a surface layer of hydrated pectins which obscure EM-based methods. Microfibrils were seen to merge into and out of short junctions where they come into close contact with one another (Figure 3). Are such junctions the biomechanical hotspots described above? We do not know yet. The effective scale of this network is in 100-500 nm range, whereas the molecular depictions of cell wall structure are at a much smaller scale, 10-50 nm range. The hotspot concept brings the implication that wall extensibility is controlled by limited, specific junctions between microfibrils rather than the bulk viscoelasticity of the matrix. Such a mechanism could provide cells with a finer means for dynamic control of their growth.
This concept of wall mechanics raises numerous questions. How are the biomechanical hotspots formed? Do cells have specific molecular mechanisms to control the density and location of such structures, or are they formed by a stochastic process requiring ‘accidental’ co-localization of nascent microfibrils in proximity with appropriate matrix components? Are hotspots destroyed in the course of cell wall extension? Are they regenerated? What kinds of microfibril motions are limited by the hotspots, i.e. lateral separation (unzipping) of microfibrils or slippage (sliding) of microfibrils? Many growing cell walls are assemblages of multiple lamellae, each made up of a monolayer of microfibrils approximately oriented in the same direction, but with different orientations in each lamella. Cell wall expansion in such a structure likely entails a combination of lateral separation and sliding of microfibrils in the different lamellae, potentially with different structures limiting each type of microfibril movement.
Some of the concepts discussed in this review are summarized in Figure 4, which is a colorized and ornamented version of the AFM image shown in Figure 3b. Microfibrils in the surface-most lamella are traced in blue. Regions where microfibrils make close contact with one another are given red highlights (potential biomechanical hotspots). Because matrix polymers are not well visualized in this AFM image, they were added at plausible sites based on their abundance, likely conformation and in-muro interactions as detected by NMR studies (green=xyloglucans; yellow=pectins), but these features of the figure must be considered as speculative placeholders until additional data help to refine their location and conformations.
Conclusions
Concepts of the identity, spatial distribution and scale of the load-bearing elements that restrict expansion of the cell wall are continuing to evolve. Relatively limited contact points between cellulose microfibrils may be key sites of wall loosening, and their creation may originate with the formation of the cellulose microfibril and its distinctive interaction with matrix polymers on hydrophobic and hydrophilic surfaces and noncrystalline regions. Molecular models of cell walls need to incorporate these physical and biomechanical aspects of cell wall architecture and to undergo critical testing and refinement by a combination of approaches in order to bring the next advance in our understanding of mechanisms by which cells control and limit cell wall expansion.
Highlights.
Cellulose interactions with the matrix depends on microfibril shape.
Physical data point to a microfibril made of 18 to 24 chains, not 36 chains.
Recent structures for cellulose synthases yield insights into glucan polymerization.
Revised roles for xyloglucan and pectin in wall structure are emerging.
Direct contact between cellulose microfibrils may control wall extensibility.
Acknowledgments
This work is supported as part of The Center for Lignocellulose Structure and Formation, an Energy Frontier Research Center funded by the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences under Award Number DE-SC0001090.
Footnotes
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