Abstract
The rate of reaction of excess double-stranded bacteriophage phiX174 and plasmid RSF2124 DNA drivers with enzymatically synthesized asymmetric RNA tracers was measured. Other reactions were carried out with excess Escherichia coli DNA and E. coli RNA labeled in vivo. RNA and DNA fragment lengths were held approximately equal. For each case it was shown that in DNA excess the rate constant for RNA-DNA hybridization is 3- to 4.5-fold lower than that of the renaturation rate constant for the driver DNA. This retardation was also observed in pseudo-first-order hybridization reactions driven by excess strand-separated RSF2124 DNA. It was concluded that the rate constant for RNA-DNA by hybridization depends partially on which species is in excess.
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Selected References
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- Bishop J. O. Molecular hybridization of ribonucleic acid with a large excess of deoxyribonucleic acid. Biochem J. 1972 Jan;126(1):171–185. doi: 10.1042/bj1260171. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Britten R. J., Davidson E. H. Studies on nucleic acid reassociation kinetics: empirical equations describing DNA reassociation. Proc Natl Acad Sci U S A. 1976 Feb;73(2):415–419. doi: 10.1073/pnas.73.2.415. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Davidson E. H., Hough B. R., Klein W. H., Britten R. J. Structural genes adjacent to interspersed repetitive DNA sequences. Cell. 1975 Mar;4(3):217–238. doi: 10.1016/0092-8674(75)90170-1. [DOI] [PubMed] [Google Scholar]
- Enea V., Zinder N. D. Guanidinium-CsCl density gradients for isopycnic analysis of nucleic acids. Science. 1975 Nov 7;190(4214):584–586. doi: 10.1126/science.1188358. [DOI] [PubMed] [Google Scholar]
- Galau G. A., Britten R. J., Davidson E. H. Studies on nucleic acid reassociation kinetics: rate of hybridization of excess RNA with DNA, compared to the rate of DNA renaturation. Proc Natl Acad Sci U S A. 1977 Mar;74(3):1020–1023. doi: 10.1073/pnas.74.3.1020. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Galau G. A., Klein W. H., Davis M. M., Wold B. J., Britten R. J., Davidson E. H. Structural gene sets active in embryos and adult tissues of the sea urchin. Cell. 1976 Apr;7(4):487–505. doi: 10.1016/0092-8674(76)90200-2. [DOI] [PubMed] [Google Scholar]
- Galau G. A., Lipson E. D., Britten R. J., Davidson E. H. Synthesis and turnover of polysomal mRNAs in sea urchin embryos. Cell. 1977 Mar;10(3):415–432. doi: 10.1016/0092-8674(77)90029-0. [DOI] [PubMed] [Google Scholar]
- Hutton J. R., Wetmur J. G. Renaturation of bacteriophage phiX174 DNA-RNA hybrid: RNA length effect and nucleation rate constant. J Mol Biol. 1973 Jul 15;77(4):495–500. doi: 10.1016/0022-2836(73)90218-0. [DOI] [PubMed] [Google Scholar]
- Melli M., Whitfield C., Rao K. V., Richardson M., Bishop J. O. DNA-RNA hybridization in vast DNA excess. Nat New Biol. 1971 May 5;231(18):8–12. [PubMed] [Google Scholar]
- Perry R. P., Kelley D. E., LaTorre J. Lack of polyadenylic acid sequences in the messenger RNA of E. coli. Biochem Biophys Res Commun. 1972 Sep 26;48(6):1593–1600. doi: 10.1016/0006-291x(72)90896-0. [DOI] [PubMed] [Google Scholar]
- Robertson H. D. Enzymatic synthesis of bacteriophage fl DNA: RNA hybrid and double stranded RNA. Nat New Biol. 1971 Feb 10;229(6):169–172. doi: 10.1038/newbio229169a0. [DOI] [PubMed] [Google Scholar]
- Smith M. J., Britten R. J., Davidson E. H. Studies on nucleic acid reassociation kinetics: reactivity of single-stranded tails in DNA-DNA renaturation. Proc Natl Acad Sci U S A. 1975 Dec;72(12):4805–4809. doi: 10.1073/pnas.72.12.4805. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Smith M. J., Hough B. R., Chamberlin M. E., Davidson E. H. Repetitive and non-repetitive sequence in sea urchin heterogeneous nuclear RNA. J Mol Biol. 1974 May 5;85(1):103–126. doi: 10.1016/0022-2836(74)90132-6. [DOI] [PubMed] [Google Scholar]
- So M., Gill R., Falkow S. The generation of a ColE1-Apr cloning vehicle which allows detection of inserted DNA. Mol Gen Genet. 1975 Dec 30;142(3):239–249. doi: 10.1007/BF00425649. [DOI] [PubMed] [Google Scholar]
- Straus N. A., Bonner T. I. Temperature dependence of RNA-DNA hybridization kinetics. Biochim Biophys Acta. 1972 Aug 16;277(1):87–95. doi: 10.1016/0005-2787(72)90355-3. [DOI] [PubMed] [Google Scholar]