Abstract
A cell-free system derived from E. coli is described in which mature-sized 16S and 23S ribosomal RNAs (rRNA) are synthesized at a high relative rate, comprising 17-25% of the total transcription. The addition of guanosine tetraphosphate (ppGpp) to this system results in up to a 5-fold selective inhibition of rRNA accumulation. This effect is exerted at the level of synthesis rather than degradation. It is concluded that ppGpp, which is produced in large amounts by E. coli during amino-acid deprivation, could mediate the decrease in rRNA synthesis that accompanies such deprivation. The expression of other genes has also been investigated. No selective reduction of transfer RNA synthesis by ppGpp is observed. The trp and lac operons are found to be stimulated at the transcriptional level by the presence of this nucleotide. It is hypothesized that ppGpp interacts with the RNA polymerase in such a manner as to alter the affinity of the enzyme for promoters in an operon-specific fashion.
Full text
PDFSelected References
These references are in PubMed. This may not be the complete list of references from this article.
- Aboud M., Pastan I. Activation of transcription by guanosine 5'-diphosphate,3'-diphosphate, transfer ribonucleic acid, and novel protein from Escherichia coli. J Biol Chem. 1975 Mar 25;250(6):2189–2195. [PubMed] [Google Scholar]
- Atherly A. G. Ribonucleic acid regulation in premeabilized cells of Escherichia coli capable of ribonucleic acid and protein synthesis. J Bacteriol. 1974 Jun;118(3):1186–1189. doi: 10.1128/jb.118.3.1186-1189.1974. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Beckmann J. S., Daniel V. Transcriptional control of in vitro tRNA-Tyr synthesis. Biochemistry. 1974 Sep 10;13(19):4058–4062. doi: 10.1021/bi00716a038. [DOI] [PubMed] [Google Scholar]
- Cashel M., Gallant J. Two compounds implicated in the function of the RC gene of Escherichia coli. Nature. 1969 Mar 1;221(5183):838–841. doi: 10.1038/221838a0. [DOI] [PubMed] [Google Scholar]
- Cashel M. Preparation of guanosine tetraphosphate (ppGpp) and guanosine pentaphosphate (pppGpp) from Escherichia coli ribosomes. Anal Biochem. 1974 Jan;57(1):100–107. doi: 10.1016/0003-2697(74)90056-6. [DOI] [PubMed] [Google Scholar]
- Cashel M. The control of ribonucleic acid synthesis in Escherichia coli. IV. Relevance of unusual phosphorylated compounds from amino acid-starved stringent strains. J Biol Chem. 1969 Jun 25;244(12):3133–3141. [PubMed] [Google Scholar]
- Donini P. Turnover of ribosomal RNA during the stringent response in Escherichia coli. J Mol Biol. 1972 Dec 30;72(3):553–569. doi: 10.1016/0022-2836(72)90174-x. [DOI] [PubMed] [Google Scholar]
- Dunn J. J., Studier F. W. T7 early RNAs and Escherichia coli ribosomal RNAs are cut from large precursor RNAs in vivo by ribonuclease 3. Proc Natl Acad Sci U S A. 1973 Dec;70(12):3296–3300. doi: 10.1073/pnas.70.12.3296. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Edlin G., Broda P. Physiology and genetics of the "ribonucleic acid control" locus in escherichia coli. Bacteriol Rev. 1968 Sep;32(3):206–226. doi: 10.1128/br.32.3.206-226.1968. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Friesen J. D., Fiil N. P., Parker J. M., Haseltine W. A. A new relaxed mutant of Escherichia coli with an altered 50S ribosomal subunit. Proc Natl Acad Sci U S A. 1974 Sep;71(9):3465–3469. doi: 10.1073/pnas.71.9.3465. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Haseltine W. A., Block R., Gilbert W., Weber K. MSI and MSII made on ribosome in idling step of protein synthesis. Nature. 1972 Aug 18;238(5364):381–384. doi: 10.1038/238381a0. [DOI] [PubMed] [Google Scholar]
- Ikemura T., Dahlberg J. E. Small ribonucleic acids of Escherichia coli. II. Noncoordinate accumulation during stringent control. J Biol Chem. 1973 Jul 25;248(14):5033–5041. [PubMed] [Google Scholar]
- Kung H. F., Brot N., Spears C., Chen B., Weissbach H. Studies on the in vitro transcription and translation of the lac operon. Arch Biochem Biophys. 1974 Jan;160(1):168–174. doi: 10.1016/s0003-9861(74)80023-8. [DOI] [PubMed] [Google Scholar]
- Lazzarini R. A., Cashel M., Gallant J. On the regulation of guanosine tetraphosphate levels in stringent and relaxed strains of Escherichia coli. J Biol Chem. 1971 Jul 25;246(14):4381–4385. [PubMed] [Google Scholar]
- Lazzarini R. A., Dahlberg A. E. The control of ribonucleic acid synthesis during amino acid deprivation in Escherichia coli. J Biol Chem. 1971 Jan 25;246(2):420–429. [PubMed] [Google Scholar]
- Lazzarini R. A., Johnson L. D. Regulation of ribosomal RNA synthesis in cold-shocked E. coli. Nat New Biol. 1973 May 2;243(122):17–20. [PubMed] [Google Scholar]
- Murooka Y., Lazzarini R. A. In vitro synthesis of ribosomal ribonucleic acid by a deoxyribonucleic acid-protein complex isolated from Escherichia coli. J Biol Chem. 1973 Sep 10;248(17):6248–6250. [PubMed] [Google Scholar]
- Nierlich D. P. Amino acid control over RNA synthesis: a re-evaluation. Proc Natl Acad Sci U S A. 1968 Aug;60(4):1345–1352. doi: 10.1073/pnas.60.4.1345. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nierlich D. P. Regulation of bacterial growth. Science. 1974 Jun 7;184(4141):1043–1050. doi: 10.1126/science.184.4141.1043. [DOI] [PubMed] [Google Scholar]
- Nikolaev N., Schlessinger D., Wellauer P. K. 30 S pre-ribosomal RNA of Escherichia coli and products of cleavage by ribonuclease III: length and molecular weight. J Mol Biol. 1974 Jul 15;86(4):741–747. doi: 10.1016/0022-2836(74)90350-7. [DOI] [PubMed] [Google Scholar]
- Peacock A. C., Dingman C. W. Molecular weight estimation and separation of ribonucleic acid by electrophoresis in agarose-acrylamide composite gels. Biochemistry. 1968 Feb;7(2):668–674. doi: 10.1021/bi00842a023. [DOI] [PubMed] [Google Scholar]
- Reiness G., Zubay G. The messenger-directed synthesis of the alpha-fragment of the enzyme beta-galactosidase. Biochem Biophys Res Commun. 1973 Aug 6;53(3):967–974. doi: 10.1016/0006-291x(73)90186-1. [DOI] [PubMed] [Google Scholar]
- STENT G. S., BRENNER S. A genetic locus for the regulation of ribonucleic acid synthesis. Proc Natl Acad Sci U S A. 1961 Dec 15;47:2005–2014. doi: 10.1073/pnas.47.12.2005. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schumacher G., Ehring R. RNA-directed cell-free synthesis of the galactose enzymes of Escherichia coli. Mol Gen Genet. 1973 Aug 28;124(4):329–344. doi: 10.1007/BF00267662. [DOI] [PubMed] [Google Scholar]
- Spadari S., Ritossa F. Clustered genes for ribosomal ribonucleic acids in Escherichia coli. J Mol Biol. 1970 Nov 14;53(3):357–367. doi: 10.1016/0022-2836(70)90071-9. [DOI] [PubMed] [Google Scholar]
- Stamminger G., Lazzarini R. A. Analysis of the RNA of defective VSV particles. Cell. 1974 Sep;3(1):85–93. doi: 10.1016/0092-8674(74)90044-0. [DOI] [PubMed] [Google Scholar]
- Travers A. A., Kamen R. I., Schleif R. F. Factor necessary for ribosomal RNA synthesis. Nature. 1970 Nov 21;228(5273):748–751. doi: 10.1038/228748a0. [DOI] [PubMed] [Google Scholar]
- Travers A. Control of ribosomal RNA synthesis in vitro. Nature. 1973 Jul 6;244(5410):15–18. doi: 10.1038/244015a0. [DOI] [PubMed] [Google Scholar]
- Travers A. RNA polymerase--promoter interactions: some general principles. Cell. 1974 Oct;3(2):97–104. doi: 10.1016/0092-8674(74)90112-3. [DOI] [PubMed] [Google Scholar]
- Yang H. L., Zubay G., Urm E., Heiness G., Cashel M. Effects of guanosine tetraphosphate, guanosine pentaphosphate, and beta-gamma methylenyl-guanosine pentaphosphate on gene expression of Escherichia coli in vitro. Proc Natl Acad Sci U S A. 1974 Jan;71(1):63–67. doi: 10.1073/pnas.71.1.63. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zubay G., Cheong L., Gefter M. DNA-directed cell-free synthesis of biologically active transfer RNA: su + 3 tyrosyl-tRNA. Proc Natl Acad Sci U S A. 1971 Sep;68(9):2195–2197. doi: 10.1073/pnas.68.9.2195. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zubay G., Lederman M. DNA-directed peptide synthesis. VI. Regulating the expression of the lac operon in a cell-free system. Proc Natl Acad Sci U S A. 1969 Feb;62(2):550–557. doi: 10.1073/pnas.62.2.550. [DOI] [PMC free article] [PubMed] [Google Scholar]