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Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1975 Aug;72(8):2974–2978. doi: 10.1073/pnas.72.8.2974

Photoincorporation of puromycin and N-(ethyl-2-diazomalonyl)puromycin into Escherichia coli ribosomes.

B S Cooperman, E N Jaynes, D J Brunswick, M A Luddy
PMCID: PMC432901  PMID: 1103130

Abstract

[3H]Puromycin and N-(ethyl-2-diazomalonyl)[3H]puromycin are incorporated into E. coli ribosomes on irradiation at 253.7 nm. Both compounds incorporate into both protein and nucleic acid. Two-dimensional gel electrophoresis of ribosomal protein shows that L23 is the major protein labeled by puromycin. Although incorporation is clearly a complex process, evidence is presented that L23 is labeled via an affinity labeling process, thus placing L23 at the aminoacyl-tRNA receptor (A) site. N-(ethyl-2-diazomalonyl)puromycin is a ribosomal ligand, as shown by its inhibition of two ribosomal assays, but it is not a good puromycin analog, and it is unclear whether its incorporation, which proceeds via both carbene-dependent and carbene-independent processes, results from affinity labeling.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Acharya A. S., Moore P. B. Reaction of ribosomal sulfhydryl groups with 5,5'-dithiobis(2-nitrobenzoic acid). J Mol Biol. 1973 May 15;76(2):207–221. doi: 10.1016/0022-2836(73)90385-9. [DOI] [PubMed] [Google Scholar]
  2. Almquist R. G., Vince R. Puromycin analogs. Synthesis and biological activity of 5'-deoxypuromycin and its aminonucleoside, 6-dimethylamino-9(3'-amin-3',5-dideoxy-beta-D-ribofuranosyl)purine. J Med Chem. 1973 Dec;16(12):1396–1398. doi: 10.1021/jm00270a018. [DOI] [PubMed] [Google Scholar]
  3. Bispink L., Matthaei H. Photoaffinity labeling of 23 S rRNA in Escherichia coli ribosomes with poly(U)-coded ethyl 2-diazomalonyl-Phe-tRNA. FEBS Lett. 1973 Dec 1;37(2):291–294. doi: 10.1016/0014-5793(73)80480-6. [DOI] [PubMed] [Google Scholar]
  4. Brunswick D. J., Cooperman B. S. Synthesis and characterization of photoaffinity labels for adenosine 3':5'-cyclic monophosphate and adenosine 5'-monophosphate. Biochemistry. 1973 Oct 9;12(21):4074–4078. doi: 10.1021/bi00745a008. [DOI] [PubMed] [Google Scholar]
  5. Czernilofsky A. P., Collatz E. E., Stöffler G., Kuechler E. Proteins at the tRNA binding sites of Escherichia coli ribosomes. Proc Natl Acad Sci U S A. 1974 Jan;71(1):230–234. doi: 10.1073/pnas.71.1.230. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Ekert B., Muel B., Latarjet R. Irradiation de ribosomes par des rayons ultraviolets: spectre d'action de l'inactivation de la fonction de synthèse. Biochim Biophys Acta. 1970 Mar 19;204(1):275–277. [PubMed] [Google Scholar]
  7. Fahnestock S., Neumann H., Shashoua V., Rich A. Ribosome-catalyzed ester formation. Biochemistry. 1970 Jun 9;9(12):2477–2483. doi: 10.1021/bi00814a013. [DOI] [PubMed] [Google Scholar]
  8. Gorelic L. Photoinduced convalent crosslinkage, in situ, of Escherichia coli 50 S ribosomal proteins to rRNA. Biochim Biophys Acta. 1975 May 1;390(2):209–225. doi: 10.1016/0005-2787(75)90342-1. [DOI] [PubMed] [Google Scholar]
  9. Hardy S. J., Kurland C. G., Voynow P., Mora G. The ribosomal proteins of Escherichia coli. I. Purification of the 30S ribosomal proteins. Biochemistry. 1969 Jul;8(7):2897–2905. doi: 10.1021/bi00835a031. [DOI] [PubMed] [Google Scholar]
  10. Harris R. J., Greenwell P., Symons R. H. Affinity labelling of ribosomal peptidyl transferase by a puromycin analogue. Biochem Biophys Res Commun. 1973 Nov 1;55(1):117–124. doi: 10.1016/s0006-291x(73)80067-1. [DOI] [PubMed] [Google Scholar]
  11. Hishizawa T., Lessard J. L., Pestka S. Studies on the formation of transfer ribonucleic acid-ribosomes complexes. XII. Phenylalanyl-oligonucleotide binding to E. coli ribosomes: necessity for a free amino group. Proc Natl Acad Sci U S A. 1970 Jun;66(2):523–530. doi: 10.1073/pnas.66.2.523. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Hsiung N., Cantor C. R. A new simpler photoaffinity analogue of peptidyl tRNA. Nucleic Acids Res. 1974 Dec;1(12):1753–1762. doi: 10.1093/nar/1.12.1753. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Hsiung N., Reines S. A., Cantor C. R. Investigation of the ribosomal peptidyl transferase center using a photoaffinity label. J Mol Biol. 1974 Oct 5;88(4):841–855. doi: 10.1016/0022-2836(74)90403-3. [DOI] [PubMed] [Google Scholar]
  14. Kagawa H., Fukutome H., Kawade Y. Inactivation of Escherichia coli ribosomes by ultraviolet irradiation. I. Activity of poly U-directed polyphenylalanine synthesis. J Mol Biol. 1967 Jun 14;26(2):249–265. doi: 10.1016/0022-2836(67)90295-1. [DOI] [PubMed] [Google Scholar]
  15. Kahan L., Kaltschmidt E. Glutaraldehyde reactivity of the proteins of Escherichia coli ribosomes. Biochemistry. 1972 Jul 4;11(14):2691–2698. doi: 10.1021/bi00764a022. [DOI] [PubMed] [Google Scholar]
  16. Kaltschmidt E., Wittmann H. G. Ribosomal proteins. XII. Number of proteins in small and large ribosomal subunits of Escherichia coli as determined by two-dimensional gel electrophoresis. Proc Natl Acad Sci U S A. 1970 Nov;67(3):1276–1282. doi: 10.1073/pnas.67.3.1276. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Kurland C. G. The requirements for specific sRNA binding by ribosomes. J Mol Biol. 1966 Jun;18(1):90–108. doi: 10.1016/s0022-2836(66)80079-7. [DOI] [PubMed] [Google Scholar]
  18. Lessard J. L., Pestka S. Studies on the formation of transfer ribonucleic acid-ribosome complexes. XXII. Binding of aminoacyl-oligonucleotides to ribosomes. J Biol Chem. 1972 Nov 10;247(21):6901–6908. [PubMed] [Google Scholar]
  19. Maassen J. A., Möller W. Identification by photo-affinity labeling of the proteins in Escherichia coli ribosomes involved in elongation factor G-dependent GDP binding. Proc Natl Acad Sci U S A. 1974 Apr;71(4):1277–1280. doi: 10.1073/pnas.71.4.1277. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Moore G., Crichton R. R. Reductive methylation: a method for preparing functionally active radioactive ribosomes. FEBS Lett. 1973 Nov 15;37(1):74–78. doi: 10.1016/0014-5793(73)80429-6. [DOI] [PubMed] [Google Scholar]
  21. Oen H., Pellegrini M., Eilat D., Cantor C. R. Identification of 50S proteins at the peptidyl-tRNA binding site of Escherichia coli ribosomes. Proc Natl Acad Sci U S A. 1973 Oct;70(10):2799–2803. doi: 10.1073/pnas.70.10.2799. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Pellegrini M., Oen H., Eilat D., Cantor C. R. The mechanism of covalent reaction of bromoacetyl-phenylalanyl-transfer RNA with the peptidyl-transfer RNA binding site of the Escherichia coli ribosome. J Mol Biol. 1974 Oct 5;88(4):809–829. doi: 10.1016/0022-2836(74)90401-x. [DOI] [PubMed] [Google Scholar]
  23. Pestka S. Peptidyl-puromycin synthesis on polyribosomes from Escherichia coli. Proc Natl Acad Sci U S A. 1972 Mar;69(3):624–628. doi: 10.1073/pnas.69.3.624. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Pestka S. Studies on the formation of transfer ribonucleic acid-ribosome complexes. 8. Survey of the effect of antibiotics of N-acetyl-phenylalanyl-puromycin formation: possible mechanism of chloramphenicol action. Arch Biochem Biophys. 1970 Jan;136(1):80–88. doi: 10.1016/0003-9861(70)90329-2. [DOI] [PubMed] [Google Scholar]
  25. Pongs O., Bald R., Erdmann V. A. Identification of chloramphenicol-binding protein in Escherichia coli ribosomes by affinity labeling. Proc Natl Acad Sci U S A. 1973 Aug;70(8):2229–2233. doi: 10.1073/pnas.70.8.2229. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Pongs O., Bald R., Wagner T., Erdmann V. A. Irreversible binding of N-iodoacetylpuromycin to E. coli ribosomes. FEBS Lett. 1973 Sep 1;35(1):137–140. doi: 10.1016/0014-5793(73)80595-2. [DOI] [PubMed] [Google Scholar]
  27. Pongs O., Erdmann V. A. Affinity labeling of E. coli ribosomes with a streptomycin-analogue. FEBS Lett. 1973 Nov 15;37(1):47–50. doi: 10.1016/0014-5793(73)80423-5. [DOI] [PubMed] [Google Scholar]
  28. Schenkman M. L., Ward D. C., Moore P. B. Covalent attachment of a messenger RNA to the Escherichia coli ribosome. Biochim Biophys Acta. 1974 Jul 24;353(4):503–508. doi: 10.1016/0005-2787(74)90056-2. [DOI] [PubMed] [Google Scholar]
  29. Schwartz I., Ofengand J. Photo-affinity labeling of tRNA binding sites in macromolecules. I. Linking of the phenacyl-p-azide of 4-thiouridine in (Escherichia coli) valyl-tRNA to 16S RNA at the ribosomal P site. Proc Natl Acad Sci U S A. 1974 Oct;71(10):3951–3955. doi: 10.1073/pnas.71.10.3951. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Singer S. J. Covalent labeling of active sites. Adv Protein Chem. 1967;22:1–54. doi: 10.1016/s0065-3233(08)60040-6. [DOI] [PubMed] [Google Scholar]
  31. Sonenberg N., Wilchek M., Zamir A. Mapping of Escherichia coli ribosomal components involved in peptidyl transferase activity. Proc Natl Acad Sci U S A. 1973 May;70(5):1423–1426. doi: 10.1073/pnas.70.5.1423. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Sonenberg N., Zamir A., Wilchek M. A photo-induced reaction of chloramphenicol with E. coli ribosomes: covalent binding of the antibiotic and inactivation of peptidyl transferase. Biochem Biophys Res Commun. 1974 Jul 24;59(2):693–696. doi: 10.1016/s0006-291x(74)80035-5. [DOI] [PubMed] [Google Scholar]
  33. Sopori M., Pellegrini M., Lengyel P., Cantor C. R. Affinity labeling of Escherichia coli ribosomal proteins with an analog of the natural initiator tRNA. Biochemistry. 1974 Dec 17;13(26):5432–5439. doi: 10.1021/bi00723a030. [DOI] [PubMed] [Google Scholar]
  34. Steinmaus H., Rosenthal I., Elad D. Light- and -ray-induced reactions of purines and purine nucleosides with alcohols. J Org Chem. 1971 Nov 19;36(23):3594–3598. doi: 10.1021/jo00822a029. [DOI] [PubMed] [Google Scholar]

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