Abstract
Deoxynucleotides have been incorporated into RNA synthesized in vitro by RNA polymerase with either double-stranded or single-stranded DNA as a template. By use of this technique to block or promote cleavage at a particular phosphodiester bond, a variety of specific cleavages may be obtained with the available ribonucleases and deoxyribonuclease I. These methods should greatly increase the ease and rapidity of nucleotide sequence determinations.
Keywords: pancreatic DNase I, U1 ribonuclease, U2 ribonuclease, pancreatic ribonuclease A, ribosubstituted DNA
Full text
PDF




Images in this article
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Bank A., Terada M., Metafora S., Dow L., Marks P. A. In vitro synthesis of DNA components of human genes for globins. Nat New Biol. 1972 Feb 9;235(58):167–169. doi: 10.1038/newbio235167a0. [DOI] [PubMed] [Google Scholar]
- Brownlee G. G., Sanger F. Chromatography of 32P-labelled oligonucleotides on thin layers of DEAE-cellulose. Eur J Biochem. 1969 Dec;11(2):395–399. doi: 10.1111/j.1432-1033.1969.tb00786.x. [DOI] [PubMed] [Google Scholar]
- Brownlee G. G., Sanger F. Nucleotide sequences from the low molecular weight ribosomal RNA of Escherichia coli. J Mol Biol. 1967 Feb 14;23(3):337–353. doi: 10.1016/s0022-2836(67)80109-8. [DOI] [PubMed] [Google Scholar]
- Burgess R. R. A new method for the large scale purification of Escherichia coli deoxyribonucleic acid-dependent ribonucleic acid polymerase. J Biol Chem. 1969 Nov 25;244(22):6160–6167. [PubMed] [Google Scholar]
- Fry K., Poon R., Whitcome P., Idriss J., Salser W., Mazrimas J., Hatch F. Nucleotide sequence of HS-beta satellite DNA from kangaroo rat Dipodomys ordii. Proc Natl Acad Sci U S A. 1973 Sep;70(9):2642–2646. doi: 10.1073/pnas.70.9.2642. [DOI] [PMC free article] [PubMed] [Google Scholar]
- GLITZ D. G., DEKKER C. A. STUDIES ON A RIBONUCLEASE FROM USTILAGO SPHAEROGENA. I. PURIFICATION AND PROPERTIES OF THE ENZYME. Biochemistry. 1964 Oct;3:1391–1399. doi: 10.1021/bi00898a001. [DOI] [PubMed] [Google Scholar]
- Hatch F. T., Mazrimas J. A. Satellite DNA's in the kangaroo rat. Biochim Biophys Acta. 1970 Nov 12;224(1):291–294. doi: 10.1016/0005-2787(70)90651-9. [DOI] [PubMed] [Google Scholar]
- Hurwitz J., Yarbrough L., Wickner S. Utilization of deoxynucleoside triphosphates by DNA-dependent RNA polymerase of E. coli. Biochem Biophys Res Commun. 1972 Aug 7;48(3):628–635. doi: 10.1016/0006-291x(72)90394-4. [DOI] [PubMed] [Google Scholar]
- Kenney W. C., Dekker C. A. Ribonuclease U 1 . Physical and chemical characterization of the purified enzyme. Biochemistry. 1971 Dec 21;10(26):4962–4970. doi: 10.1021/bi00802a020. [DOI] [PubMed] [Google Scholar]
- Laskowski M., Sr DNases and their use in the studies of primary structure of nucleic acids. Adv Enzymol Relat Areas Mol Biol. 1967;29:165–220. doi: 10.1002/9780470122747.ch4. [DOI] [PubMed] [Google Scholar]
- Ling V. Fractionation and sequences of the large pyrimidine oligonucleotides from bacteriophage fd DNA. J Mol Biol. 1972 Feb 28;64(1):87–102. doi: 10.1016/0022-2836(72)90322-1. [DOI] [PubMed] [Google Scholar]
- Poon R., Paddock G. V., Heindell H., Whitcome P., Salser W., Kacian D., Bank A., Gambino R., Ramirez F. Nucleotide sequence analysis of RNA synthesized from rabbit globin complementary DNA. Proc Natl Acad Sci U S A. 1974 Sep;71(9):3502–3506. doi: 10.1073/pnas.71.9.3502. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ross J., Aviv H., Scolnick E., Leder P. In vitro synthesis of DNA complementary to purified rabbit globin mRNA (RNA-dependent DNA polymerase-reticulocyte-hemoglobin-density gradient centrifugation-oligo(dT) primer). Proc Natl Acad Sci U S A. 1972 Jan;69(1):264–268. doi: 10.1073/pnas.69.1.264. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Salser W. A. DNA sequencing techniques. Annu Rev Biochem. 1974;43(0):923–965. doi: 10.1146/annurev.bi.43.070174.004423. [DOI] [PubMed] [Google Scholar]
- Salser W., Fry K., Brunk C., Poon R. Nucleotide sequencing of DNA: preliminary characterization of the products of specific cleavages at guanine, cytosine, or adenine residues (bacteriophage M13-ribosubstitution-DNA polymerase I-electrophoresis-two-dimensional fingerprinting). Proc Natl Acad Sci U S A. 1972 Jan;69(1):238–242. doi: 10.1073/pnas.69.1.238. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Salser W., Fry K., Wesley R. D., Simpson L. Appendix to studies on kinetoplast DNA: use of nucleic acid fingerprints to estimate the complexity of minicircle DNA. Biochim Biophys Acta. 1973 Sep 7;319(3):277–280. doi: 10.1016/0005-2787(73)90166-4. [DOI] [PubMed] [Google Scholar]
- Sanger F., Brownlee G. G., Barrell B. G. A two-dimensional fractionation procedure for radioactive nucleotides. J Mol Biol. 1965 Sep;13(2):373–398. doi: 10.1016/s0022-2836(65)80104-8. [DOI] [PubMed] [Google Scholar]
- Van de Voorde A., Rogiers R., Van Herreweghe J., Van Heuverswyn H., Volckaert G., Fiers W. Deoxynucleotide substitution: a new technique for sequence analysis of RNA. Nucleic Acids Res. 1974 Aug;1(8):1059–1067. doi: 10.1093/nar/1.8.1059. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Verma I. M., Temple G. F., Fan H., Baltimore D. In vitro synthesis of DNA complementary to rabbit reticulocyte 10S RNA. Nat New Biol. 1972 Feb 9;235(58):163–167. doi: 10.1038/newbio235163a0. [DOI] [PubMed] [Google Scholar]
- Wu R. Nucleotide sequence analysis of DNA. I. Partial sequence of the cohesive ends of bacteriophage lambda and 186 DNA. J Mol Biol. 1970 Aug;51(3):501–521. doi: 10.1016/0022-2836(70)90004-5. [DOI] [PubMed] [Google Scholar]
- Ziff E. B., Sedat J. W., Galibert F. Determination of the nucleotide sequence of a fragment of bacteriophage phiX 174 DNA. Nat New Biol. 1973 Jan 10;241(106):34–37. doi: 10.1038/newbio241034a0. [DOI] [PubMed] [Google Scholar]
- Zimmerman S. B., Sandeen D. The ribonuclease activity of crystallized pancreatic deoxyribonuclease. Anal Biochem. 1966 Feb;14(2):269–277. doi: 10.1016/0003-2697(66)90137-0. [DOI] [PubMed] [Google Scholar]