Abstract
Arsenic and antimony are toxic metalloids and are considered priority environmental pollutants by the U.S. Environmental Protection Agency. Significant advances have been made in understanding microbe-arsenic interactions and how they influence arsenic redox speciation in the environment. However, even the most basic features of how and why a microorganism detects and reacts to antimony remain poorly understood. Previous work with Agrobacterium tumefaciens strain 5A concluded that oxidation of antimonite [Sb(III)] and arsenite [As(III)] required different biochemical pathways. Here, we show with in vivo experiments that a mutation in aioA [encoding the large subunit of As(III) oxidase] reduces the ability to oxidize Sb(III) by approximately one-third relative to the ability of the wild type. Further, in vitro studies with the purified As(III) oxidase from Rhizobium sp. strain NT-26 (AioA shares 94% amino acid sequence identity with AioA of A. tumefaciens) provide direct evidence of Sb(III) oxidation but also show a significantly decreased Vmax compared to that of As(III) oxidation. The aioBA genes encoding As(III) oxidase are induced by As(III) but not by Sb(III), whereas arsR gene expression is induced by both As(III) and Sb(III), suggesting that detection and transcriptional responses for As(III) and Sb(III) differ. While Sb(III) and As(III) are similar with respect to cellular extrusion (ArsB or Acr3) and interaction with ArsR, they differ in the regulatory mechanisms that control the expression of genes encoding the different Ars or Aio activities. In summary, this study documents an enzymatic basis for microbial Sb(III) oxidation, although additional Sb(III) oxidation activity also is apparent in this bacterium.
INTRODUCTION
The metalloids arsenic (As) and antimony (Sb) are members of group 15 of the periodic table and are ubiquitous in the environment. Both are poisonous and have oxidation states of −3, 0, +3, and +5, with the last two being the most prevalent in the environment (1–5). The release of both As and Sb into the environment can occur either naturally or anthropogenically (e.g., mining), and both are considered by the U.S. Environmental Protection Agency to be priority environmental pollutants (6), with maximum drinking water standards of 10 ppb and 6 ppb for As and Sb, respectively (7). As has received more publicity due to As poisoning that has occurred and that continues (4, 8). However, Sb has emerged as a major contaminant in environments that contain mine tailings, such as those in China, Australia, New Zealand, and parts of Europe (for example, see references 5 and 9–11).
Microorganisms are fundamental to elemental cycling in all environments, and this includes As (12, 13) and presumably Sb, although information for the latter is quite sparse. As cycling has been well documented and at present is thought primarily to involve arsenite [As(III)]⇔arsenate [As(V)] redox transformations and As methylation and demethylation reactions. As(V) is reduced for detoxification purposes (via ArsC) or respiratory energy generation (ArrAB) (14–16). The physiological basis for As(III) oxidation is similar (i.e., detoxification or generation of cellular energy) and can be coupled to the reduction of oxygen or nitrate or to anoxygenic photosynthesis (15–19). The mechanisms of As(V) reduction and As(III) oxidation have been studied in some detail, with some of the enzymes purified and characterized (20–27), and X-ray crystal structures were determined for two As(III) oxidases (encoded by aioB and aioA) (28, 29). Further, an As methyltransferase (encoded by arsM) from a thermophilic eukaryotic alga (30) currently is being characterized (31, 32).
In contrast, our understandings of Sb-microbe interactions are rudimentary at best. Sb(III) oxidation was documented first in a microorganism referred to as Stibiobacter senarmontii, described as being capable of oxidizing the mineral senarmontite to form Sb2O5 (reviewed in reference 33). No further characterization of this organism or Sb(III) oxidation mechanism(s) was performed. More recently, a diverse array of microorganisms that are highly resistant to Sb(III) or that readily oxidize it have been isolated (34–36), as have organisms capable of reducing Sb(V) (37, 38). However, the mechanisms involved in these Sb redox reactions remain unknown.
The bacterium Agrobacterium tumefaciens strain 5A oxidizes both As(III) (39, 40) and Sb(III) (34). Since Sb(III) and As(III) both can interact with ArsR to derepress the ars operon required for optimal As(III) and Sb(III) resistance (41) and both are effluxed by ArsB and Acr3 (41–43), it was assumed that As(III) and Sb(III) were similar enough to share the same redox biochemistry. However, A. tumefaciens strain 5A mutants unable to oxidize As(III) were found to oxidize Sb(III) (34). Specifically, genes inactivated in these mutants were aioR, which codes for the transcriptional regulator of aioBA, and mrpB, which encodes part of a multisubunit Na+:H+ antiporter required for As(III) oxidation. This suggested that the biochemistries of As(III) and Sb(III) oxidation are indeed different.
The current study is one of several we are conducting that aim to unravel the genetics and cellular activities underlying Sb(III) resistance and oxidation in bacteria, using A. tumefaciens 5A as one potential model organism. Here, we demonstrate in vivo and in vitro evidence that As(III) oxidase can oxidize Sb(III), although the Vmax is significantly reduced compared to that of As(III). We conclude that our data are not in conflict with the previous report by Lehr et al. (34).
MATERIALS AND METHODS
Bacterial strains and plasmids.
A. tumefaciens strain 5A was used for transposon mutagenesis studies and in vivo Sb(III) resistance and oxidation experiments. This strain and its routine cultivation in liquid minimal mannitol ammonium (MMNH4) medium have been described previously (44), although the MMNH4 medium was modified to include only 50 μM phosphate and MOPS (4-morpholinepropanesulfonic acid) as a pH buffer. An aioA::Tn5 mutant was isolated from the wild-type strain using methods we have previously described (40) and was characterized (see below). Rhizobium sp. strain NT-26 was the genetic source for cloning of the aioBA genes, which encode the As(III) oxidase in NT-26 and are close homologues to aioBA in other aerobic As(III)-oxidizing microorganisms. Escherichia coli strain S17-1 (45) was used as a conjugation donor to introduce the transposon or for mutant complementation work. We previously described the construction of the aioB::lacZ reporter that allows for tracking expression of the aioBA genes transcribed from the aioB proximal promoter that involves AioR and RpoN (46, 47). A. tumefaciens strain 5A contains four arsR genes (48) that are well known to be induced by both metalloids (49); thus, as an experimental control, we also selected one of these genes, arsR4, to examine As(III) and Sb(III) regulatory effects. The lacZ reporter gene for arsR4 was constructed in a manner similar to that for aioB::lacZ. The 5′ region of arsR4 along with 269 bp of upstream DNA was PCR amplified and directionally cloned into plasmid pLSP-KT2lacZ, which carries a promoterless lacZ gene. The reporter plasmid was maintained in 5A with 500 μg/ml kanamycin on MMNH4 agar.
Transposon Tn5-B22 (45) was used for mutagenesis screening. Plasmid pDK402 was used to complement the aioA::Tn5-B22 mutant generated in this study and was previously constructed and described by Kashyap et al. (40). Briefly, it is pCPP30 that carries a 7,397-bp XbaI fragment cloned from strain 5A and that contains the complete coding regions for aioSRBA-cytC genes. This cloned fragment also contains the 3′ region of aioX (bp 369 to 918) upstream of aioS and the first 269-bp 5′ region of moeA downstream of cytC (40). Plasmid pDK402 was used to complement the aioA::Tn5 mutant for As(III) oxidation activity. Plasmid pCPP30 was used as the control plasmid.
Mutagenesis and complementation studies.
Strain 5A transconjugants first were selected on MMNH4 agar containing gentamicin (MMNH4 Gent agar; 20 μg/ml) and then transferred individually (sterile toothpick) to MMNH4 Gent agar with and without 100 μM potassium antimonyl tartrate [antimonite; here referred to as Sb(III)]. Transconjugants displaying reduced growth in the presence of 100 μM Sb(III) compared to growth in the absence of Sb(III) were selected for additional study. The Tn5-B22 insertion site in the aioA::Tn5-B22 mutant was characterized as previously described (40). For complementation studies, E. coli S17-1 was used to transfer pDK402 to the aioA::Tn5-B22 mutant by conjugation.
Sb(III) sensitivity and oxidation.
Cultures were grown in liquid MMNH4 containing tetracycline (20 μg/ml; for plasmid maintenance) and Sb(III), with concentrations of the latter depending on the experiment (see figure legends). At each sampling time, culture samples were measured for turbidity (Spectramax 384 Plus microtiter plate reader; Molecular Devices), and 1.0-ml aliquots of the cultures were centrifuged to pellet the cells. The supernatant then was analyzed for Sb(III) and Sb(V) using high-performance liquid chromatography-hydride generation-atomic fluorescence spectrometry (HPLC-HG-AFS; 986A; Beijing Puxi General Instrument Co., Beijing, China) (50).
Heterologous expression and purification of As(III) oxidase.
The recombinant As(III) oxidase (here referred to as Aio) from Rhizobium sp. strain NT-26 was expressed and purified as described previously (29), except with the following modifications: (i) after eluting the enzyme from the Ni-charged affinity column, the eluent was buffer exchanged into 50 mM Tris-HCl, 100 mM NaCl (pH 8), and the sample was concentrated; (ii) size exclusion chromatography was carried out using 50 mM Tris-HCl, 100 mM NaCl (pH 8). Fractions containing Aio were pooled and concentrated as described previously (29).
Aio assays.
Aio enzyme assays were done at 25°C at 550 nm with 20 μM equine heart cytochrome c (≥95% purity; Sigma-Aldrich) [ε550(red-ox) (reduced-minus-oxidized extinction coefficient at 550 nm) = 21.1 mM−1 cm−1] as the electron acceptor (in 50 mM Tris-HCl, pH 8) and 1.2 to 1.3 nM Aio for the As(III) assays or 160 to 190 nM for the Sb(III) assays (based on an Mr of 113,252 as calculated by mass spectrometry). Concentrations of As(III) (as sodium arsenite) and Sb(III) were varied as described below. Vmax is reported as μM As(III) or nM Sb(III) oxidized min−1 mg−1 protein−1 and is based on 1 mol As/Sb being required to reduce 2 mol cytochrome c. The results of the kinetics are from three independent experiments (i.e., with three different enzyme preparations). Protein concentrations were determined as described previously (29).
RESULTS
Characterization of an Sb(III)-sensitive aioA::Tn5 mutant.
Preliminary experiments determined that the wild-type parental strain 5A was sensitive to Sb(III), with maximum Sb(III) tolerance levels in MMNH4 agar of 100 μM. At higher Sb(III) levels, fast-growing colonies that presumably represented mutations resulting in enhanced Sb(III) resistance (e.g., reduced uptake or enhanced extrusion) spontaneously arose. This was in contrast to Sb(V), where concentrations as high as 200 μM had no apparent effect on growth (data not shown). Therefore, it was concluded that, at a minimum, Sb(III) oxidation in this strain provided a detoxification mechanism and that a transposon mutagenesis screen at 100 μM Sb(III) could be a reasonable strategy to identify genes/operons involved in Sb(III) oxidation and/or resistance.
One transconjugant of interest, and the focus of this study, was interrupted in aioA, which encodes the large subunit of the Aio (i.e., AioA). The involvement of the Aio was unexpected, given our previous work that suggested Sb(III) and As(III) oxidation involved separate genes and metabolic pathways (34). However, this Sb(III)-sensitive mutant was verified to be negative for As(III) oxidation using a qualitative silver nitrate staining technique described previously (40). In liquid MMNH4 containing 75 μM or 100 μM Sb(III), growth of the mutant was constrained relative to that of the mutant carrying the complementing aioSRBA-cytC DNA fragment (Fig. 1). Consistent with our previous observations (34), Sb(III)-naive cells required significant time to adjust to the Sb(III), with the lag phase being longer with increasing levels of Sb(III) (Fig. 1). At lower levels of Sb(III) (i.e., ≤25 μM) used for Sb(III) oxidation assays, a lag phase still was apparent, although growth of the mutant did not differ from that the wild type or the mutant carrying pDK402 (Fig. 2A).
FIG 1.
Sensitivity of the aioA::Tn5-B22 mutant to Sb(III). Growth profiles are shown for MMNH4 media containing 0, 75, or 100 mM Sb(III). Filled symbols, aioA::Tn5-B22 mutant (pCPP30, control plasmid); open symbols, aioA::Tn5-B22 mutant (pDK402 is pCPP30 containing aioSRBA-cytC). The media also contained 10 ppm tetracycline for plasmid maintenance. Error bars (where visible) represent the range of duplicate cultures.
FIG 2.
In vivo evidence of Sb(III) oxidation via the A. tumefaciens AioBA As(III) oxidase. (A) Growth profiles of all three strains illustrating no differences in apparent sensitivity to 25 mM Sb(III). (B) Concentrations of Sb(III) (circles) and Sb(V) (squares) in culture supernatants as a function of culture age. In both panels, error bars (where visible) represent ± one standard deviation.
Sb(III) oxidation was directly assayed in the aioA::Tn5 mutant, the wild-type strain, and the mutant carrying the aioSRBA-cytC operon in trans on plasmid pCPP30 that was shown to complement As(III) oxidation in an aioR::Tn5-B22 mutant (40). As controls, the wild-type strain and the mutant carried the pCPP30 vector. For these assays, lower, noninhibitory Sb(III) levels were used so that oxidation activity comparisons would not be complicated by cell biomass differences. There was no apparent difference in Sb(III) oxidation during the initial 36 h of growth in MMNH4 containing 25 μM Sb(III) (Fig. 2B); however, thereafter the mutant differed from the wild-type and complemented mutant strains (P < 0.01, which is statistically significant). Using best-fit regression of Sb(III) oxidation versus time, Sb(III) oxidation profiles were nearly linear, with R2 values of 0.99 for all three strains. Averaged over the course of the 72-h experiment for the 100-ml cultures (n = 3 each), the mutant oxidized 103 ± 7 pmol Sb(III) · h−1, compared to 155 ± 4 pmol · h−1 and 152 ± 5 pmol · h−1 for the wild-type and complemented mutant, respectively. Thus, under the culturing conditions employed, it appears that the Aio accounted for roughly one-third of the Sb(III) oxidized by wild-type cells during the time period spanning 36 to 72 h.
The Sb(III) oxidation profiles for the mutant did not diverge from the those of the wild type and the complemented mutant until well into the culture growth cycle, suggesting that the aioBA genes were not expressed during the earlier time points. To examine this further, we used an aioB::lacZ reporter construct to conveniently assess whether Sb(III) would induce expression of the aioBA genes. Initial experiments using 25 μM Sb(III) failed to detect any aioB::lacZ induction during 48 h of incubation. Given our evidence that Sb(III) was toxic to strain 5A at low concentrations and recent studies showing that excessive As(III) could inhibit aioB::lacZ expression (43), the induction experiments were repeated, but this time adding a low level of Sb(III) (5 μM) at time zero. Cell growth of the wild-type strain carrying the reporter constructs appeared slightly inhibited by 100 μM As(III) and 5 μM Sb(III) relative to that of the control culture (Fig. 3A). No growth was observed in the cultures containing 25 μM Sb(III), consistent with the prolonged lag phase that was exhibited by Sb(III)-naive cells (Fig. 1 and 2) and that we have documented previously (39). However, while aioB::lacZ was strongly induced with 100 μM As(III), no expression was detected with 5 μM Sb(III) (Fig. 3B). These results stand in contrast to significant reports in the literature demonstrating that Sb(III) can substitute for As(III) in inducing As(III)-sensitive regulatory proteins, such as ArsR (for example, see reference 49). Consequently, a lacZ reporter was constructed for one of the four arsR genes in this strain and tested for induction with As(III) and Sb(III). The arsR4::lacZ reporter responded rapidly to both 100 μM As(III) and 25 μM Sb(III) (Fig. 3B), illustrating the same phenomenon as that previously observed (49), as well as serving to verify that the null results with the aioB::lacZ reporter were reliable. We note that arsR4::lacZ induction in 25 μM Sb(III) occurred even though cell growth was not detected (Fig. 3A and B).
FIG 3.
Influence of As(III) and Sb(III) on transcriptional activation of aioB::lacZ and arsR4::lacZ reporter genes. (A) Cell growth. As was measured by culture optical density. (B) Reporter gene β-galactosidase activity. Symbols and error bars (where visible) represent the means ± ranges from duplicate cultures. △, Zero As/Sb controls; ■, aioB::lacZ with 100 mM As(III); □, aioB::lacZ with 5 mM Sb(III); ●, arsR4::lacZ with 25 mM Sb(III); ○, arsR4::lacZ with 100 mM As(III).
In vitro evidence of arsenite oxidase functioning as an antimonite oxidase.
Subsequent work then sought to directly address whether the Aio can oxidize Sb(III). The Aio from NT-26 (24) and that of A. tumefaciens strain 5A share 94% amino acid sequence identity (40); thus, the availability of the enzyme from NT-26 provided an expedient opportunity to directly test whether the purified enzyme will oxidize Sb(III). Preliminary assays illustrated Aio-mediated Sb(III) oxidation. For comparison, reaction kinetics were characterized for both As(III) and Sb(III) (Fig. 4). Using equine cytochrome c as the electron acceptor and As(III) as the electron donor, the Vmax was 120.4 ± 6.0 μmol−1 min−1 mg−1 and the Km for As(III) was 9.3 ± 1.5 μM. In contrast, when Sb(III) was used as the electron donor, the Vmax was significantly lower, at 18.4 ± 1.2 nmol−1 min−1 mg−1, and the Km for Sb(III) also was lower, at 163 ± 8 nM (Fig. 4). The kinetics experiments showed that Aio has a higher affinity for Sb(III) but that reaction velocities were reduced. This is further supported by the result of Aio activity assays when both electron donors were included in assays. At equimolar amounts (500 μM), activity increased by about 300-fold compared to that of Sb(III) alone but was reduced by about 10-fold compared to that of As(III) alone (specific activity was 5.8 μmol−1 min−1 mg−1). Other assays examined Aio behavior when the two substrates were added disproportionately. The specific activity with 500 μM As(III) and 100 μM Sb(III) was 10.5 μmol−1 min−1 mg−1 and 29 nmol−1 min−1 mg−1 for 500 μM Sb(III) plus 100 μM As(III). In summary, these results confirmed that the Aio is capable of oxidizing Sb(III), establishing a link between the in vivo Sb(III) sensitivity and oxidation experiments and providing a biochemical explanation for the in vivo data (Fig. 2B).
FIG 4.
Comparison of Michaelis-Menten kinetic data obtained for arsenite (A) and antimonite (B) for the recombinant Rhizobium sp. strain NT-26 arsenite oxidase with 20 μM horse heart cytochrome c as the electron acceptor. Data points and error bars represent the means and standard deviations from three replicate experiments, each conducted from separate arsenite oxidase purifications. Reaction velocity (v) is expressed as mol substrate oxidized per min per mg of purified Aio.
DISCUSSION
This study documents an enzymatic basis for microbial Sb(III) oxidation. This was facilitated by the screening of A. tumefaciens Tn5-B22 mutants for Sb(III) sensitivity, followed by in vivo characterization with HPLC-HG-AFS, and then in vitro studies with the purified Aio. In previous work, Lehr et al. (34) concluded that Sb(III) oxidation used a unique mechanism relative to that employed for As(III) oxidation. Their conclusion was based on the finding that two different types of mutants that lacked As(III) oxidation still could oxidize Sb(III) at rates indistinguishable from that of the wild-type strain. In the current study, the initial transconjugant screen linking Sb(III) sensitivity to an aioA::Tn5-B22 insertion mutation was unanticipated. Furthermore, Shi et al. (35) found that only a minor proportion of Sb(III)-oxidizing organisms contained aioBA homologues, providing additional evidence that these oxidation systems are fundamentally different. Nevertheless, the initial observations with the mutant spurred efforts to reassess the findings of Lehr et al. (34). In so doing, we optimized expression of aioBA by reducing the phosphate content of the medium (see reference 47) to encourage a timely expression of aioBA (within 5 h) (Fig. 3B), assuming an aioBA inducer was present, and we extended culture incubations beyond that employed previously (34). When the sampling was extended beyond log phase and well into the stationary phase (>36 h), the influence of the Aio was evident, accounting for roughly a third of the Sb(III) oxidation in the wild-type and complemented mutant strains during the course of the experiment (Fig. 2). The link between Aio and Sb(III) oxidation was confirmed by using purified recombinant Aio (Fig. 4). To summarize this element of the study, we conclude that the failure of Lehr et al. (34) to identify differences in Sb(III) oxidation between the wild-type and mutant strains incapable of oxidizing As(III) was a coincidence of culture and assay conditions.
Inoculating Sb-naive 5A into MMNH4 containing ≥5 μM Sb(III) results in prolonged lag phases (Fig. 1), as reported previously (34), clearly indicating that the cells need to make adjustments to overcome Sb(III) toxicity. The length of the adjustment phase appeared proportional to the Sb(III) concentration (Fig. 1), but at Sb(III) levels exceeding 25 μM, growth of cells lacking Aio was further constrained (Fig. 1), providing evidence that is consistent with the conclusion that, to at least some extent, Sb(III) tolerance by A. tumefaciens 5A is linked to the presence of a functional Aio that oxidizes Sb(III) to the less toxic Sb(V) (Fig. 1).
The promoter and regulatory system that drives and governs the expression of aioSRBA-cytC in the absence of As(III) has yet to be defined. In experiments involving lower inhibitory Sb(III) levels, the effect of Aio on Sb(III) oxidation was delayed until well into the culture growth cycle (i.e., 36 h) (Fig. 2), implying that Sb(III) did not induce aioBA transcription, which otherwise should have occurred within ∼4 h if an AioXSR/RpoN regulatory pathway (see references 46, 47, and 51) is capable of recognizing Sb(III), as it does As(III) (Fig. 3B). As we have shown previously, the aioB::lacZ reporter was induced with As(III) (47) but not with Sb(III) under what were otherwise the same culture conditions (Fig. 3B). Since the Sb(III) oxidation activity was shown to be depleted in the aioA::Tn5-B22 mutant but restored by the aioSRBA-cytC fragment, the evidence clearly argues that there must be a separate, active promoter somewhere within this fragment that influences aioBA expression other than the As(III)-sensitive promoter upstream of aioB that involves RpoN and AioR (46, 47). We suggest that this promoter is upstream of aioS based on the following observations. First, in previous reverse transcriptase PCR work with this strain of A. tumefaciens, we showed that aioSRBA-cytC-moeA are cotranscribed (40), illustrating that there must be a promoter upstream of aioS. Second, the complementing fragment in pDK402 contains only the 3′ region of aioX, the gene directly upstream of aioS (48); i.e., the 5′ region of aioX and its promoter are absent. We do not yet understand which environmental cue(s) activates this promoter; however, we have previously reported on two potential regulatory systems. Kashyap et al. (40) showed that quorum sensing can be involved in regulating aioSRBA expression independently of As(III), and more recently, Kang et al. (48) showed how aio gene expression is integrated into the phosphate stress response. Specifically, aioB::lacZ upregulation is coordinated with phoA (endogenous reporter for the phosphate stress response), and aioSR transcripts are significantly reduced in ΔphoB2, ΔpstS1, and/or ΔphoU1 mutants. These pho and pst genes are located in an adjacent, divergently expressed operon and encode foundational aspects of the phosphorus stress response in Gram-negative bacteria. In the current study, involvement of the Pho regulatory system in regulating the expression of aioSRBA-cytC would not be inconsistent with the low phosphate content (50 μM) of the MMNH4 medium used in these experiments to promote the expression of aioBA.
In addition to the above-described short-term aioB::lacZ reporter assays, prolonged (48-h) induction incubations with 25 μM Sb(III) failed to promote the expression of aioB::lacZ. The differential response of the aioB::lacZ and arsR4::lacZ reporters to As(III) and Sb(III) (Fig. 3) suggests that Sb(III) does not interact with the As(III)-sensing system, which thus far is understood to involve AioX and AioS (51), or at least not at the proficiency necessary to readily detect induction of the aioB::lacZ reporter. The Bonnefoy group has documented similar differential As(III) and Sb(III) regulatory effects on the expression of the Thiomonas arsenitoxydans aioBA-cyc1-aioF-cyc2 operon (52–54), apparently due to the lack of Sb(III) interaction with the aioBA transcriptional activator in this organism, AioF (55). At present, our understanding of Sb(III) detection and the associated changes to transcriptional profiling is quite poor, but the differential influences of As(III) and Sb(III) on induction of aioB and arsR4 (Fig. 3) illustrate that there are significant differences yet to be uncovered with respect to the regulation of Sb(III) oxidation.
Experiments summarized in this study clearly demonstrate that the Aio will oxidize Sb(III); however, a comparison of the Sb(III) and As(III) reaction kinetics makes it equally clear that rates differ by orders of magnitude. Although likely cometabolic in context, it would be expected that this also would be reflected by microbial Sb(III) oxidation activities in the environment. Aio contributions to Sb(III) oxidation might be most meaningful in relatively static environments, where Sb(III) residence time is sufficient to allow for quantitative oxidation (e.g., slow-moving ground water scenarios), but less likely in swiftly flowing environments (e.g., acid mine drainage flows). Importantly, while the aioB proximal promoter is not activated by Sb(III) (Fig. 3), aioBA upregulation in nature could be induced by As(III) that often cooccurs with Sb(III), facilitating Sb(III) oxidation, albeit competing with and perturbing As(III) oxidation. We also have observed Sb(III) oxidation in other strains that contain aioBA (35), but the proportional contribution of Aio to the Sb(III) oxidation in these bacteria is unknown at present.
A direct kinetic comparison between Aio and a putative Sb(III) oxidase(s) awaits the identification and cloning of the relevant gene(s). Other enzymes capable of oxidizing Sb(III) obviously are present in strain 5A and in the organisms isolated by Shi et al. (35) and Hamamura et al. (36). The genome sequence of the Sb(III)-oxidizing bacterium Comamonas testosteroni S44 does not contain a recognizable aioBA (56) and is consistent with the inability of this strain to oxidize As(III). Such organisms offer convenient modeling opportunities free of potential background Aio influences and are targets of current efforts.
To summarize, we suggest that the results of the different experimental components detailed above are internally consistent with one another and the overall assessment that (i) Aio is capable of Sb(III) oxidation, (ii) Sb(III) oxidation serves as a detoxification mechanism in A. tumefaciens strain 5A, and (iii) depending on environmental conditions and the composition of the extant microbial community, Aio may account for an appreciable proportion of Sb(III) oxidation and measurably contribute to Sb(III) cycling in nature. Being able to directly associate Sb(III) oxidation with Aio at least suggests the potential of Sb(III) as an electron donor for generating cellular energy, as has been shown previously (17, 25, 53). With A. tumefaciens strain 5A, however, Sb(III) toxicity was observed at levels below that likely to be required for growth. It will be interesting to determine if this is the case with all Sb(III)-oxidizing organisms, including the Arx-based As(III) oxidizers, and indeed whether the dissimilatory arsenate reductase (Arr) is capable of reducing Sb(V), contributing to Sb biogeochemical cycling.
ACKNOWLEDGMENTS
Efforts contributed by Y.-S.K., C.R., B.B., and T.R.M. were funded by the U.S. National Science Foundation (EAR-0745956, MCB 0817170). T.R.M. also was supported by the Montana Agricultural Experiment Station (project 911310). T.P.W. was supported by a Biotechnology and Biological Sciences Research Council (BB/F016948/1) CASE studentship with Biotech-IgG AB as the industrial partner. Efforts contributed by Q.W. and G.W. were funded by the Chinese Natural Science Foundation (31470226).
REFERENCES
- 1.Filella M, Belzile N, Chen Y-W. 2002. Antimony in the environment: a review focused on natural waters. I. Occurrence. Earth-Sci Rev 57:125–176. doi: 10.1016/S0012-8252(01)00070-8. [DOI] [Google Scholar]
- 2.Filella M, Belzile N, Chen Y-W. 2002. Antimony in the environment: a review focused on natural waters. II. Relevant solution chemistry. Earth-Sci Rev 57:265–285. doi: 10.1016/S0012-8252(02)00089-2. [DOI] [Google Scholar]
- 3.Kossoff D, Hudson-Edwards KA. 2012. Arsenic in the environment, p 1–23. In Santini JM, Ward SA (ed), The metabolism of arsenic. CRC Press, Boca Raton, FL. [Google Scholar]
- 4.Smedley PL, Kinniburgh DG. 2002. A review of the source, behaviour and distribution of arsenic in natural waters. Appl Geochem 17:517–568. doi: 10.1016/S0883-2927(02)00018-5. [DOI] [Google Scholar]
- 5.Wilson NJ, Craw D, Hunter K. 2004. Contributions of discharges from a historic antimony mine to metalloid content of river waters, Marlborough, New Zealand. J Geochem Explor 84:127–129. doi: 10.1016/j.gexplo.2004.06.011. [DOI] [Google Scholar]
- 6.United States Environmental Protection Agency. 1979. Water related fate of the 129 priority pollutants, vol 1, EP-440/4-79029A U.S. EPA, Washington, DC. [Google Scholar]
- 7.United States Environmental Protection Agency. 1999. National primary drinking water standards, doc. 810-F-94-001 U.S. EPA Office of Water, Washington, DC. [Google Scholar]
- 8.Heikens A, Panaullah GM, Meharg AA. 2007. Arsenic behaviour from groundwater and soil to crops: impacts on agriculture and food safety. Rev Environ Contam Toxicol 189:43–87. [DOI] [PubMed] [Google Scholar]
- 9.Casiot C, Ujevic M, Munoz M, Seidel JL, Elbaz-Poulichet F. 2007. Antimony and arsenic mobility in a creek draining an antimony mine abandoned 85 years ago (upper Orb basin, France). Appl Geochem 22:788–798. doi: 10.1016/j.apgeochem.2006.11.007. [DOI] [Google Scholar]
- 10.Kelepertsis A, Alexakis D, Skordas K. 2006. Arsenic, antimony and other toxic elements in the drinking water of Eastern Thessaly in Greece and its possible effects on human health. Environ Geol 50:76–84. doi: 10.1007/s00254-006-0188-2. [DOI] [Google Scholar]
- 11.Ashley PM, Craw D, Graham BP, Chappell DA. 2003. Environmental mobility of antimony around mesothermal stibnite deposits, New South Wales, Australia and southern New Zealand. J Geochem Explor 77:1–14. doi: 10.1016/S0375-6742(02)00251-0. [DOI] [Google Scholar]
- 12.Oremland RS, Stolz JF. 2003. The ecology of arsenic. Science 300:939–944. doi: 10.1126/science.1081903. [DOI] [PubMed] [Google Scholar]
- 13.Hudson-Edwards KA, Santini JM. 2013. Arsenic-microbe-mineral interactions in mining-affected environments. Minerals 3:337–351. doi: 10.3390/min3040337. [DOI] [Google Scholar]
- 14.Ahmann D, Roberts AL, Krumholz LR, Morel FM. 1994. Microbe grows by reducing arsenic. Nature 371:750. doi: 10.1038/371750a0. [DOI] [PubMed] [Google Scholar]
- 15.Stolz JF, Basu P, Santini JM, Oremland RS. 2006. Arsenic and selenium in microbial metabolism. Annu Rev Microbiol 60:107–130. doi: 10.1146/annurev.micro.60.080805.142053. [DOI] [PubMed] [Google Scholar]
- 16.Saltikov CW, Newman DK. 2003. Genetic identification of a respiratory arsenate reductase. Proc Natl Acad Sci U S A 100:10983–10988. doi: 10.1073/pnas.1834303100. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17.Santini JM, Sly LI, Schnagl RD, Macy JM. 2000. A new chemolithoautotrophic arsenite-oxidizing bacterium isolated from a gold mine: phylogenetic, physiological and preliminary biochemical studies. Appl Environ Microbiol 66:92–97. doi: 10.1128/AEM.66.1.92-97.2000. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18.Osborne TH, Santini JM. 2012. Prokaryotic aerobic oxidation of arsenite, p 61–72. In Santini JM, Ward SA (ed), The metabolism of arsenic. CRC Press, Boca Raton, FL. [Google Scholar]
- 19.Oremland RS, Stolz JF, Saltikov CW. 2012. Anaerobic oxidation of arsenite by autotrophic bacteria: the view from Mono Lake, California, p 73–80. In Santini JM, Ward SA (ed), The metabolism of arsenic. CRC Press, Boca Raton, FL. [Google Scholar]
- 20.Krafft T, Macy JM. 1998. Purification and characterization of the respiratory arsenate reductase of Chrysiogenes arsenatis. Eur J Biochem 255:647–653. doi: 10.1046/j.1432-1327.1998.2550647.x. [DOI] [PubMed] [Google Scholar]
- 21.Afkar E, Lisak J, Saltikov C, Basu P, Oremland RS, Stolz JF. 2003. The respiratory arsenate reductase from Bacillus selenitireducens strain MLS10. FEMS Microbiol Lett 226:107–112. doi: 10.1016/S0378-1097(03)00609-8. [DOI] [PubMed] [Google Scholar]
- 22.Malasarn D, Keefe JR, Newman DK. 2008. Characterization of the respiratory arsenate reductase from Shewanella sp. strain ANA-3. J Bacteriol 190:135–142. doi: 10.1128/JB.01110-07. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 23.Anderson GL, Williams J, Hill R. 1992. The purification and characterization of arsenite oxidase from Alcaligenes faecalis, a molybdenum-containing hydroxylase. J Biol Chem 267:23674–43682. [PubMed] [Google Scholar]
- 24.Santini JM, vanden Hoven RN. 2004. Molybdenum-containing arsenite oxidase of the chemolithoautotrophic arsenite oxidizer NT-26. J Bacteriol 186:1614–1619. doi: 10.1128/JB.186.6.1614-1619.2004. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 25.vanden Hoven RN, Santini JM. 2004. Arsenite oxidation by the heterotroph Hydrogenophaga sp. str. NT-14: the arsenite oxidase and its physiological electron acceptor. Biochim Biophys Acta 1656:148–155. doi: 10.1016/j.bbabio.2004.03.001. [DOI] [PubMed] [Google Scholar]
- 26.Santini JM, Kappler U, Ward SA, Honeychurch MJ, vanden Hoven RN, Bernhardt PV. 2007. The NT-26 cytochrome c552 and its role in arsenite oxidation. Biochim Biophys Acta 1767:189–196. doi: 10.1016/j.bbabio.2007.01.009. [DOI] [PubMed] [Google Scholar]
- 27.Osborne TH, Heath MD, Martin ACR, Pankowski JA, Hudson-Edwards KA, Santini JM. 2013. Cold-adapted arsenite oxidase from a psychrotolerant Polarmonas species. Metallomics 5:318–324. doi: 10.1039/c2mt20180a. [DOI] [PubMed] [Google Scholar]
- 28.Ellis PJ, Conrads T, Hill R, Kuhn P. 2001. Crystal structure of the 100 kDa arsenite oxidase from Alcaligenes faecalis in two crystal forms of 1.64Å and 2.03Å. Structure 9:125–132. doi: 10.1016/S0969-2126(01)00566-4. [DOI] [PubMed] [Google Scholar]
- 29.Warelow TP, Oke M, Schoepp-Cothenet B, Dahl JU, Bruselat N, Sivalingam GN, Leimkühler S, Thalassinos K, Kappler U, Naismith JH, Santini JM. 2013. The respiratory arsenite oxidase: structure and the role of residues surrounding the Rieske Cluster. PLoS One 8:e72535. doi: 10.1371/journal.pone.0072535. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30.Qin J, Lehr CR, Yuan C, Le XC, McDermott TR, Rosen BP. 2009. Biotransformation of arsenic by a Yellowstone thermoacidophilic eukaryotic alga. Proc Natl Acad Sci U S A 106:5213–5217. doi: 10.1073/pnas.0900238106. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 31.Ajees AA, Marapakala K, Packianathan C, Sankaran B, Rosen BP. 2012. Structure of an As(III) S-adenosylmethionine methyltransferase: insights into the mechanism of arsenic biotransformation. Biochemistry 51:5476–5485. doi: 10.1021/bi3004632. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 32.Marapakala K, Qin J, Rosen BP. 2012. Identification of catalytic residues in the As(III) S-adenosylmethionine methyltransferase. Biochemistry 51:944–951. doi: 10.1021/bi201500c. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33.Ehrlich HL. 2002. Geomicrobiology, 4th ed. Marcel Dekker, New York, NY. [Google Scholar]
- 34.Lehr CR, Kashyap DR, McDermott TR. 2007. New insights into microbial oxidation of antimony and arsenic. Appl Environ Microbiol 73:2386–2389. doi: 10.1128/AEM.02789-06. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 35.Shi Z, Cao Z, Qin D, Zhu W, Wang Q, Li M, Wang G. 2013. Correlation models between environmental factors and bacterial resistance to antimony and copper. PLoS One 8:e78533. doi: 10.1371/journal.pone.0078533. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36.Hamamura N, Fukushima K, Itai T. 2013. Identification of antimony- and arsenic-oxidizing bacteria associated with antimony mine tailing. Microbes Environ 28:257–263. doi: 10.1264/jsme2.ME12217. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 37.Abin CA, Hollibaugh JT. 2014. Dissimilatory antimonate reduction and production of antimony trioxide microcrystals by a novel microorganism. Environ Sci Technol 48:691–688. doi: 10.1021/es404098z. [DOI] [PubMed] [Google Scholar]
- 38.Kulp TR, Miller LG, Braiotta F, Webb SM, Kocar BD, Blum JS, Oremland RS. 2014. Microbiological reduction of Sb(V) in anoxic freshwater sediments. Environ Sci Technol 48:218–226. doi: 10.1021/es403312j. [DOI] [PubMed] [Google Scholar]
- 39.Macur RE, Jackson CR, Botero LM, McDermott TR, Inskepp WP. 2004. Bacterial populations associated with the oxidation and reduction of arsenic in an unsaturated soil. Environ Sci Technol 38:104–111. doi: 10.1021/es034455a. [DOI] [PubMed] [Google Scholar]
- 40.Kashyap DR, Botero LM, Franck WL, Hassett DJ, McDermott TR. 2006. Complex regulation of arsenite oxidation in Agrobacterium tumefaciens. J Bacteriol 188:1081–1088. doi: 10.1128/JB.188.3.1081-1088.2006. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 41.Xu C, Zhou T, Kuroda M, Rosen BP. 1998. Metalloid resistance mechanisms in prokaryotes. J Biochem 123:16–23. doi: 10.1093/oxfordjournals.jbchem.a021904. [DOI] [PubMed] [Google Scholar]
- 42.Rosen BP, Tamás MJ. 2010. Arsenic transport in prokaryotes and eukaryotic microbes. Adv Exp Med Biol 679:47–55. doi: 10.1007/978-1-4419-6315-4_4. [DOI] [PubMed] [Google Scholar]
- 43.Kang YS, Shi Z, Bothner B, Wang G, McDermott TR. 28 April 2014. Involvement of the Acr3 and DctA anti-porters in arsenite oxidation in Agrobacterium tumefaciens 5A. Environ Microbiol doi: 10.1111/1462-2920.12468. [DOI] [PubMed] [Google Scholar]
- 44.Somerville JE, Kahn ML. 1983. Cloning of the glutamine synthetase I gene from Rhizobium meliloti. J Bacteriol 156:68–176. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 45.Simon R, Priefer U, Puhler A. 1983. A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in gram negative bacteria. Biotechnology 1:784–791. doi: 10.1038/nbt1183-784. [DOI] [Google Scholar]
- 46.Koechler S, Cleiss-Arnold J, Proux C, Sismeiro O, Dillies MA, Goulhen-Chollet F, Hommais F, Lièvremont D, Arsène-Ploetze F, Coppée JY, Bertin PN. 2010. Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans. BMC Microbiol 10:53–65. doi: 10.1186/1471-2180-10-53. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 47.Kang YS, Bothner B, Rensing C, McDermott TR. 2012. Involvement of RpoN in regulating bacterial arsenite oxidation. Appl Environ Microbiol 78:5638–5645. doi: 10.1128/AEM.00238-12. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 48.Kang YS, Heinemann J, Bothner B, Rensing C, McDermott TR. 2012. Integrated coregulation of bacterial arsenic and phosphorus metabolisms. Environ Microbiol 14:3097–3109. doi: 10.1111/j.1462-2920.2012.02881.x. [DOI] [PubMed] [Google Scholar]
- 49.Wu J, Rosen BP. 1993. Metalloregulated expression of the ars operon. J Biol Chem 268:52–58. [PubMed] [Google Scholar]
- 50.Liao S, Zhou J, Wang H, Chen X, Wang H, Wang G. 2013. Arsenite oxidation using biogenic manganese oxides produced by a deep-sea manganese-oxidizing bacterium, Marinobacter sp. MnI7-9. Geomicrobiol J 30:150–159. doi: 10.1080/01490451.2011.654379. [DOI] [Google Scholar]
- 51.Liu G, Liu M, Kim EH, Maaty WS, Bothner B, Lei B, Rensing C, Wang G, McDermott TR. 2012. A periplasmic arsenite-binding protein involved in regulating arsenite oxidation. Environ Microbiol 14:1624–3164. doi: 10.1111/j.1462-2920.2011.02672.x. [DOI] [PubMed] [Google Scholar]
- 52.Slyemi D, Moinier D, Talla E, Bonnefoy V. 2013. Organization and regulation of the arsenite oxidase operon of the moderately acidophilic and facultative chemoautotrophic Thiomonas arsenitoxydans. Extremophiles 17:911–920. doi: 10.1007/s00792-013-0573-1. [DOI] [PubMed] [Google Scholar]
- 53.Duquesne K, Lieutaud A, Ratouchniak J, Muller D, Lett MC, Bonnefoy V. 2008. Arsenite oxidation by a chemoautotrophic moderately acidophilic Thiomonas sp.: from the strain isolation to the gene study. Environ Microbiol 10:228–237. doi: 10.1111/j.1462-2920.2007.01447.x. [DOI] [PubMed] [Google Scholar]
- 54.Slyemi D, Ratouchniak J, Bonnefoy V. 2007. Regulation of the arsenic oxidation encoding genes of a moderately acidophilic, facultative chemolithoautotrophic Thiomonas sp. Adv Mat Res 20-21:427–430. doi: 10.4028/www.scientific.net/AMR.20-21.427. [DOI] [Google Scholar]
- 55.Moinier D, Slyemi D, Byrne D, Lignon S, Lebrun R, Talla E, Bonnefoy V. 2014. An ArsR/SmtB family member is involved in the regulation by arsenic of the arsenite oxidase operon in Thiomonas arsenitoxydans. Appl Environ Microbiol 80:6413–6426. doi: 10.1128/AEM.01771-14. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 56.Li J, Wang Q, Zhang S, Qin D, Wang G. 2013. Phylogenetic and genome analyses of antimony-oxidizing bacteria isolated from antimony mined soil. Int Biodeterior Biodegrad 76:76–80. doi: 10.1016/j.ibiod.2012.06.009. [DOI] [Google Scholar]




