Abstract
Chronic Granulomatous Disease (CGD) is an immunodeficiency disorder affecting about 1 in 250,000 individuals. The disease is caused by a lack of superoxide production by the leukocyte enzyme NADPH oxidase. Superoxide is used to kill phagocytosed micro-organisms in neutrophils, eosinophils, monocytes and macrophages. The leukocyte NADPH oxidase is composed of five subunits, of which the enzymatic component is gp91-phox, also called Nox2. This protein is encoded by the CYBB gene on the × chromosome. Mutations in this gene are found in about 70% of all CGD patients. This article lists all mutations identified in CYBB in the X-linked form of CGD. Moreover, apparently benign polymorphisms in CYBB are also given, which should facilitate the recognition of future disease-causing mutations.
Keywords: gp91phox, chronic granulomatous disease, mutation, CYBB, NADPH oxidase, X-linked disease
The most common form of chronic granulomatous disease (CGD) is caused by mutations in the X-linked gene (CYBB, located at Xp21.1, OMIM *300481) for the protein gp91-phox (also known as Nox2). This protein is one of two subunits of flavocytochrome b558 (the other is p22-phox) and is an essential component of the phagocyte NADPH oxidase system. In previous tables we listed 343 mutations in CYBB known to cause X-linked CGD (X91 CGD; OMIM #306400) (1). In the present, updated tables 338 newly identified mutations have been added (marked with * in the last column). Mutations that have not been previously published elsewhere are marked as “unpubl.”. Table 1 includes missense mutations, nonsense mutations, splice site mutations, deletions and insertions that have been precisely defined. Mutations that lead to missplicing of mRNA, whether nucleotide substitutions, insertions or deletions, have all been tabulated as splice-site mutations. Table 2 includes larger deletions affecting the gp91phox gene, some of which also cause other diseases. Where possible we have cross-referenced the mutations indicated here with those in an X-CGD database that lists X91 CGD patients by accession number. This database contains additional biochemical, genetic and clinical information and is available at http://www.uta.fi/imt/bioinfo/CYBBbase/. Moreover, information can also be found in the HGMD database at http://www.hgmd.cf.ac.uk/ac/search.php. Additional information about these mutations and about CGD in general can also be found in recent reviews (2–6) and in the cited literature. An update article with the mutations causing the autosomal recessive forms of CGD has recently been published separately (7). Table 3 contains the known polymorphisms in CYBB. It is important to realize that SNPs and other sequence variants available on the internet are not necessarily functionally neutral. Table 4 summarizes the total number of kindreds with X-CGD patients included in this study, the total number of X-CGD patients, the total number of different mutations and the total number of mutations unique for one kindred, arranged according to type of mutation.
Table 1.
Mutations in the gp91phox gene CYBBthat cause X-linked CGD
cDNA Nucleotide (or Splice Site) change |
Mutation | Amino acid change |
CGD type |
Accession number |
Ref. | Kindr. (pat.) a |
---|---|---|---|---|---|---|
c.-69A>C | promoter | NA | X91− | A0089 A0090 | [1, 10–12] | 1(2) |
c.-67T>C | promoter | NA | X91− | A0166 A0550 A0551 A0552 |
[1, 10–13] | 2(4) |
c.-67dupT | promoter | NA | X91−d | [14] | 1(2) * | |
c.-65C>T | promoter | NA | X91−d | A0472 A0548 A0549 |
[1, 15–18] | 2(3) |
c.-64C>T | promoter | NA | X91−d | A0546 | [1, 16–18] unpubl. |
2(5) |
c.1A>G | missense | p.Met1Val; startcodon lost |
X91° | A0242 | [1, 19–20] unpubl. |
4(4) |
c.2T>A | missense | p.Met1Lys; startcodon lost |
X91− | A0411 | [1] | 1(1) |
c.2T>G | missense | p.Met1Arg; startcodon lost |
X91− | A0412 | [1] | 1(1) |
c.6dupG | insertion | p.Asn3GlufsX6 | X91° | A0346 | [21] unpubl. | 2(2) * |
c.8dupA | insertion | p.Asn3LysfsX6 | X91° | [22] | 1(1) * | |
c.11G>A | nonsense | p.Trp4X | X91° | A0260 A0490 | [1, 11,23] | 3(3) |
c.12G>A | nonsense | p.Trp4X | X91° | A0108 A0491 A0492 A0493 |
[1, 12,19] unpubl. |
5(6) |
c.14 27del14 | deletion | p.Val6LeufsX24 | X91° | A0305 | [1] | 1(1) |
c.23_26dupAGGG | insertion | p.Leu10GlyfsX26 | X91° | A0334 | [1] | 1(1) |
c.27delG | deletion | p.Leu10SerfsX12 | X91? | unpubl. | 1(1) * | |
c.27dupG | insertion | p.Leu10AlafsX25 | X91? | A0557 | [24] | 1(1) * |
c.40delG | deletion | p.Val14SerfsX8 | X91° | A0079 | [1, 19,25] | 1(1) |
c.42_45dupCATT | insertion | p.Leu16HisfsX20 | X91? | A0619 | [20] | 1(1) * |
c.45+1G>C f | splice site | del. exon 1? p.Met1_Ile15del? no start protein prod. |
X91° | A0223 | [1, 26] | 1(1) |
c.45+1G>A f | splice site | del. exon 1? p.Met1_Ile15del? no start protein prod. |
X91° | A0592 | [27, 28] unpubl. | 3(3) * |
c.45+1G>T f | splice site | del. exon 1? p.Met1_Ile15del? no start protein prod. |
X91° | [29] | 1(1) * | |
c.45+1delG f | splice site | del. exon 1 | X91° | [30] | 1(1) * | |
c.45+5G>A f | splice site | del. exon 1? p.Met1_Ile15del no start protein prod. |
X91°/− | A0003 | [1, 11] unpubl. | 2(2) |
c.45+5_7delGTA f | splice site | del. exon 1? p.Met1_Ile15del? no start protein prod. |
het b | unpubl. | 1(1) * | |
c.45+6T>C f | splice site | del. exon 1? p.Met1_Ile15del? no start protein prod. |
X91− | A0134 A0135 | [1, 12, 19, 31] | 1(2) |
c.45+907_908ins∼5800 j | insertion | ins.117bp in mRNA after exon 1 > p.Leu16PheX |
X91° | unpubl. | 1(1) * | |
c.46-14_-11delTTCT | splice site | del. exon 2 | X91° | unpubl. | 1(1) * | |
insGAA f | p.Leu16 Gly47del | |||||
c.46-11T>G f | splice site | del. exon 2? p.Leu16_Gly47del? |
X91° | [23] | 1(1)* | |
c.46-2A>G f | splice site | del. exon 2 p.Leu16_Gly47del |
X91? | A0498 A0499 | [1] unpubl. | 3(4) |
c.46-1G>A f | splice site | del. exon 2 p.Leu16_Gly47del |
X91° | A0224 A0500 | [1, 11,32] | 2(2) |
c.46-1G>T f | splice site | del. exon 2? p.Leu16_Gly47del? |
X91? | A0593 | [27] | 1(1)* |
c.46-1G>C f | splice site | del. exon 2 p.Leu16_Gly47del |
X91? | A0625 | [33] | 1(1)* |
c.47delT | deletion | p.Leu16ArgfsX6 | X91° | A0214 | [1, 4, 10, 34] | 1(1) |
c.49delG | deletion | p.Val17PhefsX5 | X91° | A0215 | [1, 11] | 1(1) |
c.52dupT | insertion | p.Trp18LeufsX17 | X91° | A0349 | [1] | 1(1) |
c.53G>A | nonsense | p.Trp18X | X91° 1 het b |
A0563 | [23, 35] | 2(2)* |
c.54G>C | missense | p.Trp18Cys | X91− | A0083 | [1, 11,36] | 1(1) |
c.58G>C | missense | p.Gly20Arg | X91° | A0136 A0376 | [1, 11, 12, 37] unpubl. |
2(2) |
c.58G>A | missense | p.Gly20Arg | X91° | A0647 | [20] unpubl. |
2(2)* |
c.66_70delCGTCTinsA | deletion/ insertion |
p.Asn22LysfsX38 | X91° | [1] | 1(1) | |
c.64 67dupAACG | insertion | p.Val23GlufsX13 | X91? | A0298 | [1, 11] | 1(1) |
c.80 83delTCTG | deletion | p.Val27GlyfsX33 | X91° | A0327 A0328 | [1] unpubl. | 5(5) |
c.83G>A | nonsense | p.Trp28X | X91° 1 het b |
A0483 A0575 A0563 |
[1, 20,38] unpubl. |
4(4) |
c.84G>A | nonsense | p.Trp28X | X91° 1 het b |
A0477 A0478 | [39] unpubl. |
3(3)* |
c.85delT | deletion | p.Tyr29IlefsX32 | X91? | unpubl. | 1(1)* | |
c.90C>A | nonsense | p.Tyr30X | X91? | [29] | 1(1)* | |
c.90_92delCCGinsGGT | deletion/ insertion | p.Tyr30X | X91° het b |
[22, 40] | 1(1)* | |
c.92_93insC | insertion | p.Val32GlyfsX3 | X91° | [39] unpubl. | 1(2)* | |
c.94delG | deletion | p.Val32PhefsX29 | X91° | unpubl. | 1(1)* | |
c.99T>A | nonsense | p.Tyr33X | X91° | A0024 | [1, 11] | 1(1) |
c.105delT | deletion | p.Pro36HisfsX25 | X91− | unpubl. | 1(1)* | |
c.112A>T | nonsense | p.Lys38X | X91° | unpubl. | 1(1)* | |
c.121delT | deletion | p.Tyr41ThrfsX20 | X91° | A0018 | [1, 11,34] unpubl. |
2 (2) |
c.121dupT | insertion | p.Tyr41LeufsX62 | X91° | A0350 | [1, 17] | 1(1) |
c.121T>G | missense | p.Tyr41Asp | X91− | A0495,A0544 | [1, 41] | 1(1) |
c.125C>G | missense | p.Thr42Arg | X91? | unpubl. | 1(1)* | |
c. 126_130delAAGAAinsTT TC |
deletion/ insertion |
p.Arg43PhefsX18 | X91? | unpubl. | 1(1)* | |
c.127A>T | nonsense | p.Arg43X | X91° | A0261 | [1, 11, 20] unpubl. |
3(3) |
c.134T>G | missense | p.Leu45Arg | X91− | unpubl. | 1(1)* | |
c.141+1delG f | splice site | del. exons 2 + 3 p.Leu16_Ala84del |
X91° | A0216 | [1, 11,19] | 1(1) |
c.141+1G>A f | splice site | del. exon 2 p.Leu16_Gly47del |
X91° | A0131 A0502 A0503 |
[1, 12,19, 42] unpubl. |
5(5) |
c.141+1G>T f | splice site | del. exon 2 p.Leu16_Gly47del |
X91° | A0138 A0154 | [1, 12,37] unpubl. |
5(5) |
c.141+2T>C f | splice site | del exon 2 p.Leu16_Gly47del |
X91° | A0506 | [1] unpubl. | 3(3) |
c.141+2T>G f | splice site | del exon 2 p.Leu16_Gly47del |
X91? | A0501 A0504 A0505 |
[1, 12] | 3(3) |
c.141+5G>A f | splice site | del exon 2 p.Leu16_Gly47del |
X91° | [1, 26] unpubl. | 2(2) | |
c.141+5G>T f | splice site | del exon 2 p.Leu16_Gly47del |
X91° | A0615 | [20] unpubl. | 2(2) * |
c.141+5_+6delGT f | splice site | del exon 2? p.Leu16_Gly47del? |
X91? | A0225 | [1, 11] | 1(1) |
c.142–12_-28del17 f | splice site | del exon 3 p.Ser48_Ala84del |
X91° | [1] | 1(1) | |
c.142-12C>T f | splice site | del exon 3? p.Ser48_Ala84del? |
X91° | unpubl. | 1(1) * | |
c.142-12delC insACCTCTTCTAG f |
splice site | del exon 3? p.Ser48_Ala84del? |
X91° | unpubl. | 1(1) * | |
c.142-2A>G f | splice site | del. exon 3 p.Ser48_Ala84del |
X91° | A0105 | [1, 43] | 1(1) |
c.142-2A>T f | splice site (created) |
del TCAG from exon 3 p.Ile15TrpfsX6 |
X91° | [1] | 1(1) | |
c.142-1G>C f | splice site | del. exon 3? p.Ser48_Ala84del? |
X91° | [42] | 1(2) * | |
c.142-1G>A f | splice site | del. exon 3 + w.t. p.Ser48_Ala84del |
X91? | A0616 | [20] | 1(1) * |
c.142_159del18/ insCCTGCCTGAATTTC (dup173_186)T e |
deletion/ insertion splice site? |
p.Ser48_Ala53del insProAlaX |
X91° | A0599 A0600 A0601 |
[27] unpubl. |
1(3) * |
c.143C>G e | nonsense | p.Ser48X | X91° | [28] unpubl. | 2(2) * | |
c.158C>A | missense | p.Ala53Asp | X91− | A0050 A0352 | [1, 11] | 1(2) |
c.159dupC | insertion | p.Arg54GlnfsX49 | X91° | A0160 | [1, 12,19] unpubl. |
1(1) |
c.160 165delAGGGCC | deletion | p.Arg54_Ala55del | X91° | A0322 | [39] unpubl. | 2(2) * |
c.160A>G | missense | p.Arg54Gly | X91+ | A0243 | [1, 19] | 1(1) |
c.161G>T | missense | p.Arg54Met | X91+ | A0455 | [1, 17,44] | 2(2) |
c.162G>C | missense | p.Arg54Ser | X91+ | A0133 | [1, 11,45, 46] | 1(1) |
c.164C>A | missense | p.Ala55Asp | X91° | A0353 | [1, 23,44] unpubl. |
3(3) |
c.167C>T | missense | p.Pro56Leu | X91− | A0244,A0245 A0304 | [1, 11, 47𠄓49] | 2(3) |
c.170C>A | missense | p.Ala57Glu | X91+ | A0069 | [1, 4, 17, 44, 50] unpubl. |
2(2) |
c.175T>C | missense | p.Cys59Arg | X91° | A0175, A0176 | [1, 12,19] unpubl. |
2(3) |
c.176G>T | missense | p.Cys59Phe | X91− | A0362 | [1] | 1(1) |
c.176G>A | missense | p.Cys59Tyr | het b | A0363 | [1] | 1(1) |
c.177C>G | missense | p.Cys59Trp | X91° | A0246 A0541 | [1, 19,39] | 2(2) |
c.177C>A | nonsense | p.Cys59X | X91° | unpubl. | 1(1) * | |
c.185delT | deletion | p.Phe62SerfsX5 | X91° | A0614 | [20] | 1(1) * |
c.189C>G | missense | p.Asn63Lys | X91° | A0413 A0414 | unpubl. | 2(3) * |
c.190T>C | missense | p.Cys64Arg | X91° | A0247 | [1,19] unpubl. |
2(2) |
c.192C>A | nonsense | p.Cys64X | X91° | A0364 | [1,27] | 1(1) |
c.194T>G | missense | p.Met65Arg | X91° | unpubl. | 1(2) * | |
c.195dupG | insertion | p.Leu66AlafsX37 | X91° | A0196 A0197 | [1,11,12] | 1(2) |
c.197T>C | missense | p.Leu66Pro | X91? | [28] | 1(1) * | |
c.210dupA | insertion | p.Val71SerfsX32 | X91? | unpubl. | 1(1) * | |
c.217C>T | nonsense | p.Arg73X | X91° 1 het b |
A0008 A0188 A0262 A0263 A0456 A0457 A0458 A0459 A0567 |
[1, 11, 17, 26, 38, 39, 51–53] unpubl. |
25(25) |
c.226delC | deletion | p.Leu76CysfsX32 | X91? | unpubl. | 1(2) * | |
c.242delG | deletion | p.Gly81ValfsX27 | X91° | A0011 | [1,11] unpubl. |
2(2) |
c.242dupG | insertion | p.Ser82PhefsX21 | X91° | unpubl. | 1(1) * | |
c.251delC (3’ end of exon 3) f |
splice site | del. exon 3 p.Ser48_Ala84del |
X91° | A0110 | [1, 12, 52, 54] | 1(1) |
c.252G>A (3’end of exon 3) f |
splice site | del. exon 3 p.Ser48_Ala84del |
X91°/− 1 het b |
A0022 A0063 A0100 A0127 A0193 A0226 A0227 A0228 A0229 A0230 A0231 A0354 A0355 A0356 A0357 A0534 A0577 A0578 A0633 A0634 A0642 |
[1, 11, 12, 17, 20, 23, 29, 33, 38, 49, 55–58] unpubl. |
44(53) |
c.252G>T (3’ end of exon 3) f |
splice site | del. exon 3 p.Ser48_Ala84del |
X91? | [23] unpubl. | 2(2) * | |
c.252+1G>A f | splice site | del. exon 3 p.Ser48_Ala84del |
X91° | A0510 | [1,42] unpubl. | 3(3) |
c.252+1G>T f | splice site | del exon 3 p.Ser48_Ala84del |
X91° | A0509 | [1] | 1(1) |
c.252+1G>C f | splice site | del exon 3 p.Ser48_Ala84del |
X91? | unpubl. | 1(1) * | |
c.252+2T>C f | splice site | del exon 3? p.Ser48_Ala84del? |
X91? | unpubl. | 1(1) * | |
c.252+2dupT f | splice site | del exon 3 p.Ser48_Ala84del |
X91° | [1] | 2(2) | |
c.252+5G>A f | splice site | del exon 3 p.Ser48_Ala84del |
X91° | A0023 A0507 A0508 A0594 |
[1, 27, 29, 32] unpubl. |
8(10) |
c.252+5G>C f | splice site | del exon 3? p.Ser48_Ala84del? |
X91° | A0148 | [1,12,54] | 1(1) |
c.253-875_336+∼800del f | deletion | del exon 4 p.Cys85_Ser112del |
X91° | [1] | 1(1) | |
c.253–8A>G f | splice site (created) |
insTCCAAAG into exon 4 p.Cys85SerfsX20 |
X91° | [1,12] | 1(1) | |
c.253–3A>G f | splice site (created) |
insAG into exon 4 p.Cys85SerfsX24 |
het b | [59] unpubl. | 2(2) * | |
c.253–1G>A f | splice site | del14 from exon 4 | X91? | A0626 | [33, 55] unpubl. | 2(2) * |
(created) | p.Cys85SerfsX13 | |||||
c.253–1G>T f | splice site | del exon 4? p.Cys85ArgfsX15? |
X91? | unpubl. | 1(1) * | |
c.255C>A | nonsense | p.Cys85X | X91° | A0365 | [1] | 1(1) |
c.262_263ins2.1 kb | insertion | p.Thr88LysX? c | X91° | A0299 | [1, 19, 60] | 1(1) |
c.271C>T | nonsense | p.Arg91X | X91° 1 hetb |
A0029 A0149 A0178 A0264 A0265 A0266 A0460 A0461 A0462 A0463 A0464 A0643 |
[1, 11, 12, 17, 22, 43, 53, 61, 62] unpubl. |
24(25) |
c.275delG | deletion | p.Arg92AsnfsX16 | X91? | unpubl. | 1(1) * | |
c.286_290dupAGGAA | insertion | p.Asn97LysfsX13 | X91° | [39] | 1(1) * | |
c.295delA | deletion | p.Thr99ProfsX9 | X91° | A0097 | [1,11,12] | 1(1) |
c.296_306del11insTCC | deletion/ insertion |
p.Thr99IlefsX21 | X91° | unpubl. | 1(3) * | |
c.301C>T | missense | p.His101Tyr | X91− | A0381 | [1, 17, 63, 64] | 1(1) |
c.302A>G | missense | p.His101Arg | X91° 1 het b |
A0017 A0248 | [1, 11, 51] | 2(2) |
c.318G>A | nonsense | p.Trp106X | X91° | A0015 A0479 A0586 |
[1, 11, 27, 61] | 3(3) |
c.320T>G | missense | p.Met107Arg | X91− | A0410 | unpubl. | 2(2) * |
c.321dupG | insertion | p.Ile108AspfsX15 | X91° | A0057 | [1,11] | 1(1) |
c.327_328delAC | deletion | p.Leu110SerfsX12 | X91° | A0210 | [1,11] unpubl. | 2(2) |
c.330 331delTC | deletion | p.His111LeufsX11 | X91? | unpubl. | 1(1) * | |
c.330_331delTCinsAT | deletion/ insertion |
p.His111Tyr | X91° | unpubl. | 1(1) * | |
c.334T>C | missense | p.Ser112Pro | X91? | [28] | 1(1) * | |
c.337+1G>C f | splice site | del exon 4? p.Cys85ArgfsX15? |
X91? | A0595 | [27] | 1(1) * |
c.337+1G>A f | splice site | del exon 4? p.Cys85ArgfsX15? |
X91? | unpubl. | 1(1) * | |
c.337+1G>T f | splice site | del exon 4 p.Cys85ArgfsX15 |
X91° | unpubl. | 1(1) * | |
c.337+2dupT f | splice site | del exon 4? p.Cys85ArgfsX15? |
X91? | unpubl. | 1(1) * | |
c.337+5dupG f | splice site | del exon 4? p.Cys85ArgfsX15? |
X91° | unpubl. | 1(1) * | |
c.338-2A>C f | splice site | del exon 5? p.Ala113GlufsX3? |
X91° | A0232 | [1,19] | 1(1) |
c.338-2A>G f | splice site | del. exon 5 p. Ala113GlufsX3 |
X91° | A0514 | [1,29] unpubl. | 2(2) |
c.338-1G>A f | splice site | del exon 5 p. Ala113GlufsX3 |
X91° | A0512 A0513 | [1,17,44] unpubl. |
2(2) |
c.339delG | deletion | p.Ile114PhefsX14 | X91° | unpubl. | 1(1) * | |
c.343C>T | missense | p.His115Tyr | X91? | A0383 | unpubl. | 1(1) * |
c.345C>A | missense | p.His115Gln | X91? | A0382 | [1] | 1(1) |
c.354delA | deletion | p.His119IlefsX9 | X91° | A0103 | [1,12,19] | 1(1) |
c.356dupA | insertion | p.His119GlnfsX4 | X91° | A0007 | [1,11] | 1(1) |
c.356A>G | missense | p.His119Arg | X91° | A0384 A0385 | [1,12] | 2(2) |
c.359T>C | missense | p.Leu120Pro | X91° | A0249 | [1,11] | 1(1) |
c.360 375del16 | deletion | p.Phe121ValfsX2 | het b | unpubl. | 1(1) * | |
c.370G>T | nonsense | p.Glu124X | X91° | unpubl. | 1(1) * | |
c.374G>A | nonsense | p.Trp125X | X91? | unpubl. | 1(1) * | |
c.375G>A | nonsense | p.Trp125X | X91° | A0564 | [35] | 1(1) * |
c.375G>T | missense | p.Trp125Cys | X91? | A0480 | [1] | 1(1) |
c.382_385dupAATG | insertion | p.Ala129GlufsX6 | X91° | unpubl. | 1(1) * | |
c.388delC | deletion | p.Arg130GlufsX10 | X91? | [22] unpubl. | 2(2) * | |
c.388C>T | nonsense | p.Arg130X i | X91° 2 het b |
A0065 A0113 A0267 A0268 A0269 A0270 A0271 A0272 A0427 A0428 A0429 A0430 A0431 A0432 A0587 A0596 |
[1, 11, 12, 17, 20, 22, 23, 27, 39, 49, 65] unpubl. |
41(44) |
c.388 389insT | insertion | p.Arg130LeufsX4 | X91° | A0080 | [1,19] | 1(1) |
c.389G>C | missense | p.Arg130Pro | X91° | unpubl. | 1(1) * | |
c.389G>T | missense | p.Arg130Leu + partial outsplicing exon 5 |
X91− | unpubl. | 1(1) * | |
c.394_406del13 | deletion | p.Asn132LeufsX4 | X91− | unpubl. | 1(1) * | |
c.398delA | deletion | p.Asn133IlefsX7 | het b | A0543 | [66] | 1(1) * |
c.411T>A | nonsense | p.Tyr137X | X91? | unpubl. | 1(1) * | |
c.412 418delTCAGTAG | deletion | p.Ser138HisfsX21 | X91° | unpubl. | 1(1) * | |
c.413C>A | nonsense | p.Ser138X | X91° | unpubl. | 2(2) * | |
c.422T>C | missense | p.Leu141Pro | X91° | A0559 | [23, 24] | 2(2) * |
c.424T>C | missense | p.Ser142Pro | X91° | A0465 | [1] unpubl. | 2(2) |
c.425C>T | missense | p.Ser142Phe | X91° | [42] | 1(1) * | |
c.425 426delCT | deletion | p.Ser142X | X91° | unpubl. | 1(2) * | |
c.439 440delAG | deletion | p.Arg147AlafsX3 | X91? | [27] | 1(1) * | |
c.442C>T | nonsense | p.Gln148X | X91° | A0273 A0420 | [1, 17, 52] unpubl. |
3(3) |
c.442_443delCAinsT | deletion/ insertion |
p.Gln148X | X91° | A0111 | [1,52] | 1(1) |
c.446dupA | insertion | p.Asn149LysfsX2 | X91° | A0139 | [1,12,52] | 1(1) |
c.448G>T | nonsense | p.Glu150X | het b | unpubl. | 1(1) * | |
c.450 451delAA | deletion | p.Ser151fsX13 | X91° | unpubl. | 1(1) * | |
c.455 456delAT | deletion | p.Tyr152SerfsX12 | X91° | A0332 | [1] | 1(1) |
c.456T>A | nonsense | p.Tyr152X | X91° | A0124 A0644 | [1, 12, 19, 62] | 2(2) |
c.458T>G | missense | p.Leu153Arg | X91° | unpubl. | 1(2) * | |
c.461delA | deletion | p.Asn154IlefsX7 | X91° | unpubl. | 1(1) * | |
c.466G>A | missense | p.Ala156Thr | X91− | A0055 A0137 A0187 |
[1, 11, 12, 51, 52] |
3(3) |
c.469C>T | nonsense | p.Arg157X | X91° 1 hetb |
A0074 A0075 A0095 A0098 A0152 A0177 A0274 A0275 A0276 A0277 A0433 A0434 A0565 A0566 A0567 A0568 |
[1, 11, 12, 20, 23, 35, 43, 44, 61, 67] unpubl. |
26(30) |
c.472_475delAAGA | deletion | p.Lys158GlufsX2 | X91° | A0311 | [1] | 1(1) |
c.475_481delAGAATAA e | deletion | p.Ile160ThrfsX10 | X91? | [28] | 1(1) * | |
c.479dupT | insertion | p.Asn162GlufsX3 | X91? | A0335 | [1] | 1(1) |
c.482A>G (3’end of exon 5) f |
splice site | multiple splice products |
X91− | A0179 A0180 | [1,52] | 1(2) |
c.482_483+4 delAGGTAA f |
splice site | del exon 5? p. Ala113GlufsX3? |
X91° | A0181 | [1,12] | 1(1) |
c.483G>T (3’end of exon 5) f |
splice site | del exon 5 p. Ala113GlufsX3 |
X91° | A0233 | [1,11] | 1(1) |
c.483+1G>A f | splice site | del exon 5 p. Ala113GlufsX3 |
X91° | A0515 | [1, 23, 42] unpubl. |
4(5) |
c.483+1G>T f | splice site | del exon 5 p. Ala113GlufsX3 |
X91° | A0115 A0234 A0516 A0517 |
[1, 11, 12, 19, 49] unpubl. |
6(6) |
c.483+2T>C f | splice site | del exon 5? p Ala113GlufsX3? |
X91° | A0164 | [1, 43] | 1(1) |
c.483+3A>T f | splice site | del exon 5 p. Ala113GlufsX3 |
X91° | A0009 | [1, 32] | 1(1) |
c.483+5G>A f | splice site | del exon 5? p Ala113GlufsX3? |
X91− | A0140 A0141 | [1,19,26] | 1(2) |
c.483+978G>T f | splice site (created) |
ins parts of intron 5 multiple splice products |
X91? | A0606 | [68, 69] | 2(2) * |
c.483+1880_+1881ins836 c,f |
splice site (created) |
multiple splice products |
X91° | [1, 70] | 1(1) | |
c.484-100_674+291del581 f |
deletion | del. exon 6 (p.Asn162ThrfsX15 |
X91? | [20] | 1(1) * | |
c.484-?_897+?dup h | insertion | p.Asn162_Lys299dup | X91° | unpubl. | 1(1) * | |
c.484-3C>A f | splice site | del exon 6 p.Asn162ThrfsX15 |
X91− | unpubl. | 1(2) * | |
c.484-2A>T f | splice site | del exon 6? p.Asn162ThrfsX15? |
X91? | unpubl. | 1(1) * | |
c.517delC | deletion | p.Leu173CysfsX16 | X91° | A0217 | [1,11] | 1(1) |
c.535G>A | missense | p.Gly179Arg | X91° | A0375 | [1,25] | 1(1) |
c.535G>T | nonsense | p.Gly179X | X91° | unpubl. | 2(2) * | |
c.536G>A | missense | p.Gly179Glu | X91? | unpubl. | 1(1) * | |
c.548 559del12 | deletion | p.Thr183_Leu186del | X91? | unpubl. | 1(1) * | |
c.553T>C | missense | p.Cys185Arg | X91? | unpubl. | 1(1) * | |
c.554delG | deletion | p.Cys185SerfsX4 | X91° | A0218 | [1,19] | 1(1) |
c.555C>A | nonsense | p.Cys185X | X91° | A0182 A0358 | [1,12,19] unpubl. |
3(3) |
c.555_560dupCCTCAT | insertion | p.Leu188 Ile189dup | X91? | A0585 | [27] | 1(1) * |
c. 5561_569delATTAATTA T |
deletion | p.Leu188_Ile190del | X91− | [1] | 1(1) | |
c.565_568delATTA | deletion | p.Ile189SerfsX24 | X91° | A0309 | [1] unpubl. | 3(3) |
c. 573_581dupTTCCTCCAC |
insertion | p.Thr191_Ser193dup | X91− | unpubl. | 1(1) * | |
c.577T>C | missense | p.Ser193Pro | X91° | A0627 | [23,33] unpubl. | 3(3) * |
c.578C>T | missense | p.Ser193Phe | X91− | A0466 | [1,27] unpubl. | 2(2) |
c.583 588dupAAAACC | insertion | p.Lys195_Thr196 dup |
X91− | unpubl. | 1(1) * | |
c.591_592ins41 | insertion | p.Arg198ThrfsX30 | X91° | [1] | 1(1) | |
c.592delC | deletion | p.Arg198GlyfsX16 | X91° | unpubl. | 1(1) * | |
c.595delA | deletion | p.Arg199GlyfsX15 | X91° | A0320 | [1,12] | 1(1) |
c.597_604dup8 e | insertion | p.Phe202CysfsX15 | X91? | [28] | 1(1) * | |
c.603C>G | nonsense | p.Tyr201X | X91? | unpubl. | 1(1) * | |
c.603delC | deletion | p.Phe202LeufsX12 | X91° | A0333 | [1] | 1(1) |
c.606_608delTGAinsGG | deletion/ insertion |
p.Phe202LeufsX12 | X91° | [1,17] | 1(1) | |
c.607G>T | nonsense | p.Glu203X | X91° | A0278 | [1,11] unpubl. | 2(2) |
c.613T>A | missense | p.Phe205Ile | X91° | A0060 | [1,33,55] | 1(1) |
c.614 632del19 | deletion | p.Phe205SerfsX4 | X91° | unpubl. | 1(2) * | |
c.618G>A | nonsense | p.Trp206X | het b | unpubl. | 1(1) * | |
c.621C>A | splice site (created) | del. part exon 6 p.Tyr207X |
X91° | A0012 | [1, 11, 32] | 1(1) |
c.625C>T | missense | p.His209Tyr | X91-/o | A0006 A0387 A0388 A0389 |
[1, 11, 50] unpubl. |
5(5) |
c.625 626delCA | deletion | p.His209SerfsX16 | X91? | A0211 | [1,19] | 1(1) |
c.626A>G | missense | p.His209Arg | X91° | A0386 | [1,17] unpubl. | 2(2) |
c.627T>A | missense | p.His209Gln | X91° | A0125 | [1, 12, 23, 52] | 2(2) |
c.628_631dupCATC | insertion | p.Leu211ProfsX16 | X91° het b |
A0597 | [65] | 1(1) * |
c.632T>C | missense | p.Leu211Pro | X91? | unpubl. | 1(1) * | |
c.632T>G | missense | p.Leu211Arg | het b | unpubl. | 1(1) * | |
c.636delT | deletion | p.Phe212LeufsX1 | X91° | [29] unpubl. | 2(2) * | |
c.646_648delTTC | deletion | p.Phe216del | X91− | A0010 A0058 A0085 |
[1,19, 47, 55, 71] |
3(3) |
c.664C>A | missense | p.His222Asn | X91° | A0390 | [1,12] | 1(1) |
c.664C>T | missense | p.His222Tyr | X91° | A0394 | [1,12] | 1(1) |
c.665A>G | missense | p.His222Arg | X91° | A0250 A0391 A0392 A0393 |
[1, 11, 12, 23, 26] unpubl. |
6(6) |
c.665A>T | missense | p.His222Leu | X91? | unpubl. | 1(1) * | |
c.667G>T | nonsense | p.Gly223X i | X91° | [72] | 1(1) * | |
c.667_668delGG/insTT | deletion/ insertion |
p.Gly223Leu | X91? | A0109 | [1,12,19] | 1(1) |
c.671C>G | missense | p.Ala224Gly | X91° | A0351 | [1,17] | 1(1) |
c.674A>T | missense | p.Glu225Val | X91° | [42, 61] | 2(2) * | |
c.674+1G>T f | splice site | del exon 6? p.Asn162ThrfsX15? |
X91° | unpubl. | 1(1) * | |
c.674+1G>A f | splice site | del exon 6 p.Asn162ThrfsX15 |
X91° | unpubl. | 2(2) * | |
c.674+3G>C f | splice site | del exon 6? p.Asn162ThrfsX15 |
X91? | unpubl. | 1(1) * | |
c.674+4A>G f | splice site | del exon 6 p.Asn162ThrfsX15 |
X91° | [29] unpubl. | 2(2) * | |
c.674+4A>T f | splice site | del exon 6? p.Asn162ThrfsX15 |
X91° | unpubl. | 1(2) * | |
c.674+4A>C f | splice site | del. exon 6? p.Asn162ThrfsX15? |
X91? | [28] | 1(2) * | |
c.674+4_+7delAGTG f | splice site | multiple splice products |
X91° | A0106 | [1,12,19] unpubl. |
5(6) |
c.674+5G>A f | splice site | del exon 6 p.Asn162ThrfsX15 |
X91? | A0235 | [1,11] | 1(1) |
c.674+5G>C f | splice site | del exon 6 p.Asn162ThrfsX15 |
X91° | A0519 A0561 A0562 |
[1,42] | 4(7) |
c.674+6T>A f | splice site | del exon 6? p.Asn162ThrfsX15? |
X91° | A0518 | [1,12] | 1(1) |
c.674+6T>C f | splice site | del exon 6 p.Asn162ThrfsX15 |
X91? | unpubl. | 1(1) * | |
c.674+?_804+?del f | deletion | del exon 7 p.Arg226LeufsX5 |
X91° | [20] | 1(1) * | |
c.674+921A>G f | splice site (created) |
ins 56 of intron 6 into mRNA p.Glu225AspfsX2 |
X91? | A0581 | [73] | 1(1) * |
c.675-999A>G f | splice site (created) |
ins 94 of intron 6 into mRNA multiple splice products |
X91° | [1, 74] | 1(1) | |
c.675-24_690dup40 | insertion | p.Gln231SerfsX23 | X91° | A0301 | [1, 75] | 1(1) |
c.675-2A>C f | splice site | del exon 7? p.Arg226LeufsX5? |
X91° | unpubl. | 1(1) * | |
c.675-1G>A f | splice site | del exons 6_7 p.Asn162_Met268del |
X91° | unpubl. | 1(1) * | |
c.676C>T | nonsense | p.Arg226X | X91° 1 het b |
A0132, A0150, A0279, A0280 A0281, A0282, A0283, A0284 A0435 A0436 A0437 A0438 A0439 A0440 A0441 A0442 A0588 |
[1, 11, 12, 17, 22, 23, 27, 39, 53, 76, 77] unpubl. |
57(63) |
c.691C>T | nonsense | p.Gln231X | X91° 1 het b |
A0421 A0422 | [1, 20, 39] unpubl. |
4(4) |
c.700G>T | nonsense | p.Glu234X | X91° | A0607 | [78] | 1(1) * |
c.703_704delAG | deletion | p.Ser235PhefsX5 | X91° | A0120, A0212 A0323 |
[1, 11, 29, 52, 53] unpubl. |
5(5) |
c.706_707dupTT | insertion | p.Leu236PhefsX7 | X91° | A0344 | [1,17,44] | 1(1) |
c.713delT | deletion | p.Val238GlyfsX4 | X91? | A0628 | [33] | 1(1) * |
c.716 720delATAAT | deletion | p.Ile241SerfsX3 | X91° | A0117 | [1,12,52] | 1(1) |
c.730T>A | missense | p.Cys244Ser | X91? | [29] | 1(1) * | |
c.730T>C | missense | p.Cys244Arg | X91− | A0171 | [1,12,52] unpubl. |
2(2) |
c.730T>G | missense | p.Cys244Gly | X91− | A0359 | [26] | 1(1) * |
c.731G>C | missense | p.Cys244Ser | X91− | A0251 | [1,11,49,51] | 1(1) |
c.731G>A | missense | p.Cys244Tyr | X91− | A0252 | [1, 61, 79] unpubl. |
3(3) |
c.732T>A | nonsense | p.Cys244X | het b | [23] | 1(1) * | |
c.733G>T | nonsense | p.Glu245X | X91° | unpubl. | 1(1) * | |
c.736C>T | nonsense | p.Gln246X | X91° | A0122 A0123 A0186 A0423 |
[1, 12, 19, 23, 78] unpubl. |
7(10) |
c.740_741delAAinsT | deletion/ insertion |
p.Lys247IlefsX8 | X91° | A0021 | [1,19] | 1(1) |
c.742dupA | insertion | p.Ile248AsnfsX36 | X91° 1 het b |
A0002 A0061 A0062 A0121 |
[1, 11, 12, 17, 23, 33, 52, 54 |
30(32) |
A0126 A0146 A0162 A0170 A0189 A0337 A0338 A0339 A0340 A0341 A0342 A0343 A0602 A0603 A0604 |
[55] unpubl. | |||||
c.752G>A | nonsense | p.Trp251X | X91° | A0285 | [1,11] unpubl. | 2(2) |
c.754G>T | nonsense | p.Gly252X | X91? | unpubl. | 1(1) * | |
c.755delG | deletion | p.Gly252GlufsX3 | X91° | A0195 A0219 A0220 |
[1, 12, 19, 20] unpubl. |
4(5) |
c.755_756delGA | deletion | p.Gly252GlufsX31 | X91° | [42] | 1(1) * | |
c.760dupA | insertion | p.Ile254AsnfsX30 | X91° | A0128 | [1,12,54] | 1(1) |
c.769T>C | missense | p.Cys257Arg | X91° | unpubl. | 1(2) * | |
c.773delC | deletion | p.Pro258GlnfsX11 | X91° | [42] | 1(1) * | |
c.771C>A | nonsense | p.Cys257X | het b | [1] | 1(1) | |
c.779C>G | missense | p.Pro260Arg | X91° | unpubl. | 1(1) * | |
c.781 782delCA | deletion | p.Gln261ValfsX22 | X91° | A0001 | [1,11] | 1(1) |
c.781C>T | nonsense | p.Gln261X | X91° | A0020 A0286 A0424 A0425 |
[1,11] unpubl. |
5(5) |
c. 785_804+1dup21del9ins2 f |
splice site | del. exon7 p.Arg226LeufsX5 |
X91? | unpubl. | 1(1) * | |
c.788delC | deletion | p.Ala263ValfsX6 | X91° | A0582 | [27] | 1(1) * |
c.797delC | deletion | p.Pro266LeufsX3 | X91° | A0316 | [1,23,] | 2(2) |
c.799_800insAA | insertion | p.Pro267GlnfsX3 | X91? | unpubl. | 1(1) * | |
c.804+1G>A f | splice site | del exon 7 p.Arg226LeufsX5 |
X91° | A0522 | [1, 77, 80] | 2(2) |
c.804+1G>T f | splice site | del exon 7 p.Arg226LeufsX5 |
X91° | A0523 | [1] unpubl. | 3(3) |
c.804+2T>A f | splice site | del. exon 7 p.Arg226LeufsX5 |
X91° | A0005 | [1, 32] | 1(1) |
c.804+2T>C f | splice site | del. exon 7 p.Arg226LeufsX5 |
X91° | A0236 A0237 | [1,11] unpubl. | 3(4) |
c.805-2A>C f | splice site | del exon 8? p.Thr269_Lys299del? |
X91° | A0238 | [1,19] | 1(1) |
c.805-2A>T f | splice site | del. exon 8? p.Thr269_Lys299del? |
X91° | unpubl. | 1(1) * | |
c.805-2A>G f | splice site | del exon 8 p.Thr269_Lys299del |
X91° | A0520 | [1,17,44] | 1(1) |
c.805-1G>A f | splice site | del exon 8? p.Thr269_Lys299del? |
X91° | A0521 | [1,12] unpubl. | 2(2) |
c.805-1G>C f | splice site | del. exon 8? p.Thr269_Lys299del? |
X91? | unpubl. | 1(1) * | |
c.805-? f | splice site | del exon 8 p.Thr269_Lys299del |
X91° | [1,25] | 1(1) | |
c.810G>A | nonsense | p.Trp270X | X91° | A0624 | [53] unpubl. | 2(2) * |
c.811A>T | nonsense | p.Lys271X | X91° | unpubl. | 1(1) * | |
c.815G>A | nonsense | p.Trp272X | X91° | A0099 A0287 A0482 |
[1,12,19] | 3(3) |
c.816G>A | nonsense | p.Trp272X | X91° | A0047 | [1,11] | 1(1) |
c.831_853del23 | deletion | p.Met277IlefsX63 | X91? | unpubl. | 1(1) * | |
c.840T>A | nonsense | p.Tyr280X | X91? | unpubl. | 1(1) * | |
c.844_874del31 | deletion | p.Cys282AsnfsX21 | X91° | A0536 | unpubl. | 1(1) * |
c.845dupG | insertion | p.Cys282TrpfsX2 | X91° | unpubl. | 1(1) * | |
c.867G>A | nonsense | p.Trp289X | het b | [81] | 1(1) * | |
c.868C>T | nonsense | p.Arg290X | X91° 2 hetb |
A0045 A0046 A0145 A0159 A0194 A0198 A0288 A0289 A0443 A0444 A0445 A0446 A0447 A0448 A0449 A0450 A0451 A0452 A0453 A0639 |
[1, 11, 12, 20, 23, 29, 33, 39, 42, 43, 49, 53, 61] unpubl. |
38(42) |
c.871 880del10 | deletion | p.Ser291ArgfsX19 | X91° | A0321 | [1,17] | 1(1) |
c.883 887dupGTGGT | insertion | p.Ile297TrpfsX18 | X91? | unpubl. | 1(1) * | |
c.890_904del15 | deletion | p.Ile297_Val301del | X91+ | A0310 | [1,25] | 1(1) |
c.894delC | deletion | p.Lys299ArgfsX14 | hetb | [82] | 1(2) * | |
c.897G>C | missense splice site? |
p.Lys299Asn | X91− | unpubl. | 1(1) * | |
c.897G>T | missense splice site? |
p.Lys299Asn | X91? | A0402 | [1] | 1(1) |
c.897G>A (3’end of exon 8) f |
splice site | del exon 8 p.Thr269_Lys299del |
X91? | [23] unpubl. | 2(2) * | |
c.897+1G>A f | splice site | del exon 8 p.Thr269_Lys299del |
X91° | A0524 | [1,29] | 2(2) |
c.897+1G>T f | splice site | del. exon 8 p.Thr269_Lys299del |
X91° | A0239 A0240 A0303 |
[1,11,23] | 3(4) |
c.898-1G>A f | splice site | del exon 9? p.Val300AspfsX4? |
X91? | unpubl. | 2(2) * | |
c.903dupC | insertion | p.Thr302HisfsX46 | X91° | unpubl. | 1(1) * | |
c.904A>C | missense | p.Thr302Pro | X91? | [23] | 1(1) * | |
c.906 909delTCAC | deletion | p.His303LeufsX9 | X91? | unpubl. | 1(1) * | |
c.907C>T | missense | p.His303Tyr | X91+ | unpubl. | 1(1) * | |
c.[907C>A;911C>G] | missense | p.[His303Asn; Pro304Arg] |
X91+ | A0538 | [1, 83, 84] | 1(2) |
c.909C>A | missense | p.His303Gln | X91° | unpubl. | 1(7) * | |
c.911C>T | missense | p.Pro304Leu | X91? | unpubl. | 1(2) * | |
c.915delC | deletion | p.Phe305LeufsX8 | X91? | A0558 | [24] | 1(1) * |
c.916A>T | nonsense | p.Lys306X | X91° | A0290 | [1,11] | 1(1) |
c.919A>C | missense | p.Thr307Pro | X91° | A0469 A0590 | [27, 39] | 2(2) * |
c.919delA | deletion | p.Thr307ProfsX6 | X91° | A0221 | [1,11] | 1(1) |
c.[922 923insCCTTTCA; 935_937delTGA] e |
deletion/ insertion |
p.Ile308ProfsX39 | X91? | [1,12] | 1(1) | |
c.922 923insGTTTC | insertion | p.Ile308SerfsX7 | X91° | [39] | 1(1) * | |
c.925G>A | missense | p.Glu309Lys | X91− | A0101 A102 A0368 A0369 A0370 A0371 A0372 |
[1, 17, 20, 43] unpubl. |
9(15) |
c.925G>T | nonsense | p.Glu309X | X91° | unpubl. | 1(2) * | |
c.929T>C | missense | p.Leu310Pro | X91° | unpubl. | 1(1) * | |
c.931delC | deletion | p.Gln311ArgfsX2 | X91? | unpubl. | 1(1) * | |
c.935T>G | missense | p.Met312Arg | X91? | A0253 | [1,11] unpubl. | 2(2) |
c.935T>A | missense | p.Met312Lys | X91? | A0629 | [33] | 1(1) * |
c.943_945delAAG | deletion | p.Lys315del | X91− | A0163 A0208 A0209 |
[1, 11, 12, 43, 48, 79] unpubl. |
3(4) |
c.948delG | deletion | p.Phe317SerfsX26 | X91° | A0222 | [1,19] | 1(1) |
c.958delG | deletion | p.Glu320LysfsX23 | X91? | unpubl. | 1(1) * | |
c.[958delG;962T>G] | deletion/ missense |
p.Glu320LysfsX23 | X91° | unpubl. | 1(1) * | |
c.958G>T | nonsense | p.Glu320X | X91° | A0569 | [35] | 1(1) * |
c.960delA | deletion | p.Val321TrpfsX22 | X91° | A0306 | [1] | 1(1) |
c.965delG | deletion | p.Gly322AspfsX21 | X91° | A0118 | [1,12,52] | 1(1) |
c.965G>A | missense | p.Gly322Glu | X91− | A0377 | [1,12] unpubl. | 2(2) |
c.967C>T | nonsense | p.Gln323X | X91° | A0067 | [1, 17, 19] | 1(1) |
c.972C>A | nonsense | p.Tyr324X | X91° | unpubl. | 1(1) * | |
c.973A>T | missense | p.Ile325Phe | X91− | A0401 | [1,12] | 1(1) |
c.979delG | deletion | p.Val327SerfsX16 | X91° | A0584 | [27] | 1(1) * |
c.981 985delCAAGT | deletion | p.Lys328ProfsX18 | X91° | unpubl. | 1(1) * | |
c.985T>C | missense | p.Cys329Arg | X91° | [42] | 1(1) * | |
c.992_997 delAGGTGTinsGGGGG |
deletion/ insertion |
p.Lys331ArgfsX12 | X91° | unpubl. | 1(1) * | |
c.994delG | deletion | p.Val332CysfsX11 | X91° | A0571 | [35] | 1(1) * |
c.997T>C | missense | p.Ser333Pro | X91? | A0200 | [1,12,52] unpubl. |
2(2) |
c.1006G>T | nonsense | p.Glu336X | X91° | A0087 A088 A0291 |
[1, 20, 52] | 4(5) |
c.1010G>A | nonsense | p.Trp337X | X91° | A0292 A0535 | [1,11] unpubl. | 3(3) |
c.1011G>A | nonsense | p.Trp337X | X91? 1 hetb |
[53] unpubl. | 3(3) * | |
c.1012C>T | missense | p.His338Tyr | X91− | A0014 A0084 A0254 A0397 A0398 |
[1, 11, 26, 49, 80, 85] unpubl. |
7(7) |
c.1012C>A | missense | p.His338Asn | X91? | A0396 | [1] | 1(1) |
c.1013A>G | missense | p.His338Arg | X91+ | unpubl. | 2(4) * | |
c.1014C>A | missense | p.His338Gln | X91? | unpubl. | 3(3) * | |
c.1016C>A | missense | p.Pro339His | X91+/− | A0070 A0096 A0416 A0417 |
[1, 11, 12, 17, 19, 22, 26, 29, 44, 86] unpubl. |
11(13) |
c.1016C>T | missense | p.Pro339Leu | X91? | unpubl. | 1(1) * | |
c.1016delC | deletion | p.Pro339LeufsX4 | X91? | A0317 | [1] | 1(1) |
c.1016dupC | insertion | p.Thr341TyrfsX7 | X91° | A0347 | [1, 22,87] | 1(2) |
c.1022C>A | missense | p.Thr341Lys | X91+ | A0255 | [1,19,88] | 1(1) |
c.1022C>T | missense | p.Thr341Ile | X91− | A0470 | [1] | 1(1) |
c.1025T>A | missense | p.Leu342Gln | X91° | A0064 A0256 A0404 |
[1, 11, 33, 55] unpubl. |
4(4) |
c.1027A>C | missense | p.Thr343Pro | X91° | A0591 | [27] unpubl. | 2(2) * |
c.1030T>C | missense | p.Ser344Pro | X91° | unpubl. | 2(2) * | |
c.1030 1031insCT | insertion | p.Ala345ProfsX42 | X91° | unpubl. | 1(2) * | |
c.1031C>T | missense | p.Ser344Phe | X91° | A0467 A0468 | [1,17,44] unpubl. |
3(4) |
c.1032delC | deletion | p.Ala345ProfsX41 | X91° | A0324 A0325 | [1] | 2(2) |
c.1038delT | deletion | p.Glu347ArgfsX39 | X91° | A0129 A130 A0161 A0318 |
[1, 12, 19, 54] unpubl. |
5(6) |
c.1046delA | deletion | p.Asp349AlafsX37 | X91? | unpubl. | 1(1) * | |
c.1061A>C | missense | p.His354Pro | X91° | unpubl. | 2(2) * | |
c.1061A>G | missense | p.His354Arg | X91− | A0399 | unpubl. | 1(2) * |
c.1062_1071del10 | deletion | p.His354GlnfsX29 | X91° | A0207 | [1,11] | 1(1) |
c.1063delA | deletion | p.Ile355SerfsX31 | X91° | [23] | 1(1) * | |
c. 1063_1070delATCCGCA T |
deletion | p.Ile355ArgfsX15 | X91? | unpubl. | 1(1) * | |
c.1067G>C | missense | p.Arg356Pro | X91? | A0454 | [12] | 1(1) * |
c.1075G>A | missense | p.Gly359Arg | X91° | A0056 A0378 | [1,11,23] unpubl. |
3(4) |
c.1076G>T | missense | p.Gly359Val | X91? | A0379 | [1] | 1(1) |
c.1076G>C | missense | p.Gly359Ala | X91− | A0611 | [20] | 1(1) * |
c.1081T>C | missense | p.Trp361Arg | X91° | [22] unpubl. | 3(3) * | |
c.1082G>A | nonsense | p.Trp361X | X91? | unpubl. | 1(1) * | |
c.1083G>A | nonsense | p.Trp361X | X91° | A0484 | 1, 23,28 | 3(3) |
c.1085C>T | missense | p.Thr362Ile | X91° | unpubl. | 2(3) * | |
c.1085C>G | missense | p.Thr362Arg | X91? | unpubl. | 1(1) * | |
c.1094T>C | missense | p.Leu365Pro | X91° | A0405 | [1] unpubl. | 2(2) |
c.1094dupT | insertion | p. Phe366ValfsX7 | X91° | unpubl. | 1(1) * | |
c.1095delG | deletion | p.Phe366SerfsX20 | X91? | unpubl. | 1(1) * | |
c.1105T>C | missense | p.Cys369Arg | X91+ het b |
A0257 | [1, 11,88] | 1(1) |
c.1120C>T | nonsense | p.Gln374X | X91° | unpubl. | 2(2) * | |
c.1123G>T | nonsense | p.Glu375X | X91° | A0610 | [20] unpubl. | 3(3) * |
c.1129C>T | nonsense | p.Gln377X | X91° | A0293 | [1,11] | 1(1) |
c.1136dupC | insertion | p.Trp380ValfsX5 | X91? | unpubl. | 1(1) * | |
c.1139G>A | nonsense | p.Trp380X | X91° | A0086 A0174 | [1,12,52] unpubl. |
3(3) |
c.1140G>A | nonsense | p.Trp380X | X91° | unpubl. | 3(3) * | |
c.1144 1145insAGGT | insertion | p.Leu382GlnfsX4 | het b | unpubl. | 1(1) * | |
c.1147_1150delCCTA | deletion | p.Pro383ArgfsX2 | X91? | A0315 | [1] | 1(1) |
c.1150_1151+2delAAGT f | splice site | del exon 9? p.Val300AspfsX4? |
X91° | A0156 | [1, 23, 52, 53] unpubl. |
9(9) |
c.1151+4A>T f | splice site | del exon 9? p.Val300AspfsX4? |
X91? | unpubl. | 1(1) * | |
c.1151+5G>A f | splice site | del exon 9? p.Val300AspfsX4 |
X91° | A0525 | [1] unpubl. | 2(2) |
c.1152-11T>G f | splice site | del exon 10/ins10 into exon 10> pAla488PhefsX12 |
X91− | [1,26] | 1(2) | |
c.1152-2A>G f | splice site | del exon 10? p.Ile385SerfsX63? |
X91? | A0580 | [38] | 1(1) * |
c.1152-2A>T f | splice site | del exon 10? p.Ile385SerfsX63? |
X91° | unpubl. | 2(2) * | |
c.1152-1G>A f | splice site | alt splice site>1 nt del p.Ile385X |
X91° | unpubl. | 2(2) * | |
c.1154T>G | missense | p.Ile385Arg | X91° | unpubl. | 1(1) * | |
c.1163delA | deletion | p.Asp388ValfsX17 | X91? | unpubl. | 1(1) * | |
c.1165G>A | missense | p.Gly389Arg | X91? | unpubl. | 1(1) * | |
c.1166G>A | missense | p.Gly389Glu | X91° | A0380 | [1,17] unpubl. | 2(2) |
c.1166G>C | missense | p.Gly389Ala | X91− | A0004 | [1,11,49,51] | 1(1) |
c.1166G>T | missense | p.Gly389Val | X91? | unpubl. | 1(1) * | |
c.1166_1170del insTGTTCAGC |
deletion/ insertion |
p.Gly389_Pro390del insValPheSer |
X91? | unpubl. | 1(1) * | |
c.1167delG | deletion | p.Phe391LeufsX14 | X91? | unpubl. | 1(1) * | |
c.1169C>T | missense | p.Pro390Leu | X91° | A0258 A0259 | [1,11] unpubl. | 2(3) |
c.1177delA | deletion | p.Thr393LeufsX12 | X91? | unpubl. | 1(1) * | |
c.1180_1182delGCC/ins ATGTGATGAACACAT |
deletion/ insertion |
p.Ala394MetX2 | X91° | A0072 A0073 | [1, 89] | 1(2) |
c.1186 1195del10 | deletion | p.Glu396SerfsX6 | X91? | unpubl. | 1(1) * | |
c.1190 1191delAT | deletion | p.Asp397GlyfsX5 | X91° | A0213 | [1,11] | 1(1) |
c.1214T>G | missense | p.Met405Arg | X91° | A0142 | [1,12,19] | 1(1) |
c.1222G>A | missense | p.Gly408Arg | X91? | A0157 A0158 | [1,12,19] | 2(3) |
c.1222G>C | missense | p.Gly408Arg | X91+ | [90] | 1(1) * | |
c.1223G>A | missense | p.Gly408Glu | X91+ 1 het b |
A0013 A0016 A0190 A0191 |
[1, 11, 12, 19, 88] |
3(4) |
c.1234G>A | missense | p.Gly412Arg | X91? | unpubl. | 1(1) * | |
c.1234G>C | missense | p.Gly412Arg | X91+ | unpubl. | 1(2) * | |
c.1235G>A | missense | p.Gly412Glu | X91? | unpubl. | 1(1) * | |
c.1234_1257dup24 | insertion | p.Gly412Ile419dup | X91? | [1] | 1(1) | |
c.1237dupG | insertion | p.Val413GlyfsX18 | X91° 1 het b |
A0144 | [1,12,19] unpubl. |
2(2) |
c.1244C>A | missense | p.Pro415His | X91+ | A0048 A049 A0076 A077 A0107 |
[1, 11, 12, 91] | 3(5) |
c.1244C>G | missense | p.Pro415Arg | X91? | A0419 | [1] | 1(1) |
c.1244C>T | missense | p.Pro415Leu | X91+ | A0112 | [1, 3, 12, 19] unpubl. |
3(3) |
c.1253C>A | missense | p.Ser418Tyr | X91° | unpubl. | 1(1) * | |
c.1255dupA | insertion | p.Ile419AsnfsX12 | X91? | A0574 | [38] | 1(1) * |
c.1259T>C | missense | p.Leu420Pro | X91° | A0406 | [1, 17, 64] | 1(1) |
c.1264T>C | missense | p.Ser422Pro | X91? | A0202 | [1,12,19] | 1(1) |
c.1265C>A e | nonsense | p.Ser422X | X91? | [23] | 1(1) * | |
c. 1265_1273delTCAGTCTG G |
deletion | p.Ser422_Trp424del | X91− | unpubl. | 1(1) * | |
c.1271G>A | nonsense | p.Trp424X | hetb | unpubl. | 1(1) * | |
c.1272delG | deletion | p.Trp424CysfsX11 | X91° | A0330 | [1,12] | 1(1) |
c.1272G>A | nonsense | p.Trp424X | X91° | A0622 A0623 | [53] unpubl. | 4(4) * |
c.1275C>G | nonsense | p.Tyr425X | X91? | A0496 | [1] | 1(1) |
c.1281T>G | nonsense | p.Tyr427X | X91? | unpubl. | 1(1) * | |
c.1284C>A | nonsense | p.Cys428X | X91° | A0598 | unpubl. | 1(1) * |
c.[1287delT;1290delC] | deletion | p.Asn429LysfsX23 | X91° | A0617 | [20] | 1(1) * |
c.1294delA | deletion | p.Thr432ProfsX3 | X91° | unpubl. | 1(1) * | |
c.1309A>T | nonsense | p.Lys437X | X91° | A0403 | [1,17] unpubl. | 2(2) |
c.1313delA f | deletion splice site? |
p.Lys438ArgfsX64 | X91° | A0053 A0054 | [1,11] unpubl. | 2(3) |
c.1313_1314delAGinsT f | deletion/ insertion splice site? |
p.Lys438IlefsX64 | X91° | A0091 | [1,12,19] | 1(1) |
c.1314delG f | deletion splice site? |
p.Ile439SerfsX63 | X91? | unpubl. | 2(2) * | |
c.1314+1G>A f | splice site | del exon 10? p.Ile385SerfsX63? |
X91? 1 het b |
A0526 A0579 | [1, 12, 38] | 2(2) |
c.1314+1G>T f | splice site | del exon 10 p.Ile385SerfsX63 |
X91? | A0529 | [1] | 1(1) |
c.1314+1G>C f | splice site | del exon 10 p.Ile385SerfsX63 |
X91° | unpubl. | 1(1) * | |
c.1314+2T>A f | splice site | del exon 10 p.Ile385SerfsX63 |
X91° | A0527 | [1] | 1(1) |
c.1314+2T>G f | splice site | del exon 10 p.Ile385SerfsX63 |
het b | unpubl. | 1(1) * | |
c.1314+4_+5AG>GC f | splice site | del exon 10 p.Ile385SerfsX63 |
X91− | unpubl. | 1(1) * | |
c.1315-2A>C f | splice site | del exon 11? p.Ile439_Gln487del? |
X91? | unpubl. | 2(2) * | |
c.1315-1G>C f | splice site | del exon 11 p.Ile439_Gln487del |
X91° | A0528 | [1,12] | 1(1) |
c.1315-1G>T f | splice site | del. exon 11? p.Ile439_Gln487del? |
X91? | unpubl. | 1(1) * | |
c.1315delA f | deletion splice site? |
p.Ile439SerfsX63 | X91° | A0081 | [1, 19, 25] | 1(1) |
c.1320C>A | nonsense | p.Tyr440X | X91? | A0151 | [1,12,52] | 1(1) |
c.1320C>G | nonsense | p.Tyr440X | X91? | unpubl. | 1(1) * | |
c.1326C>G | nonsense | p.Tyr442X | X91° | A0589 | [27] | 1(1) * |
c.1327delT | deletion | p.Trp443GlyfsX59 | X91? | A0630 | [33] | 1(1) * |
c.1329G>A | nonsense | p.Trp443X | X91° | A0168 A0485 | [1,12,52] | 2(2) |
c.1333T>C | missense | p.Cys445Arg | X91? | A0605 | unpubl. | 1(1) * |
c.1335C>A | nonsense | p.Cys445X | X91° | A0361 | [1] unpubl. | 2(3) |
c.1340delA | deletion | p.Asp447AlafsX55 | X91° | [23] | 1(1) * | |
c.1348_1352delGCCTT | deletion | p.Ala450X | X91? | A0308 | [1] | 1(1) |
c.1350delC | deletion | p.Phe451LeufsX51 | X91? | A0192 | [1,12,19] | 1(1) |
c.1354G>T | nonsense | p.Glu452X | X91° | A0373 | [1,17] | 1(1) |
c.1357T>C | missense | p.Trp453Arg | X91° | A0486 A0487 Kuhns unp |
[1, 12, 23] unpubl. |
3(3) |
c.1357T>A | missense | p.Trp453Arg | X91° | A0613 | [20] | 1(2) * |
c.1357 1358delTG | deletion | p.Trp453ValfsX32 | X91° | unpubl. | 1(1) * | |
c.1358G>A | nonsense | p.Trp453X | X91° | A0488 | [1,12,19] | 1(1) |
c.1359G>A | nonsense | p.Trp453X | X91° | A0489 | [1] unpubl. | 2(3) |
c.1363 1375del13 | deletion | p.Ala455AsnfsX43 | X91° | unpubl. | 1(1) * | |
c.1375C>T | nonsense | p.Gln459X | X91° | Nunoi unp | 1(1) * | |
c.1382delT | deletion | p.Leu461ArgfsX41 | X91? | unpubl. | 1(1) * | |
c.1384G>T | nonsense | p.Glu462X i | X91° | A0374 | [39, 72] | 2(2) * |
c.1396C>T | nonsense | p.Gln466X | X91° | A0426 | [1,17] unpubl. | 2(2) |
c.1399G>T | nonsense | p.Glu467X | X91− | unpubl. | 1(2) * | |
c.1407-1414del8/ins TGTTGTA e |
deletion/ insertion |
p.Asn470ValfsX14 | X91° | [1] unpubl. | 1(2) | |
c.1415delG | deletion | p.Gly472AlafsX30 | X91° | A0092 A0493 | [1,12,19] | 1(2) |
c.1421T>G | missense | p.Leu474Arg | X91− | unpubl. | 1(1) * | |
c.1428C>A | nonsense | p.Tyr476X | X91° | A0071 | [1, 11, 17, 44, 86] |
1(1) |
c.1437C>A | nonsense | p.Tyr479X | X91? | A0631 | [33] unpubl. | 3(3) * |
c.1441A>C | missense | p.Thr481Pro | X91+ | unpubl. | 1(1) * | |
c.1447 1459del13 | deletion | p.Trp483ArgfsX15 | X91° | A0331 | [1,17] | 1(1) |
c.1448G>A | nonsense | p.Trp483X | X91° | unpubl. | 3(3) * | |
c.1449G>A | nonsense | p.Trp483X | X91° | A0294 | [1,19] | 1(1) |
c.1455delG | deletion | p.Glu485AspfsX17 | X91? | A0165 | [1,12,19] | 1(1) |
c.1456dupT | insertion | p.Ser486PhefsX11 | X91° | A0184 A0185 | [1,12,19] unpubl. |
2(3) |
c.1461+1G>A f | splice site | del exon 11? p.Ile439_Gln487del? |
X91? | A0241 | [1,19] unpubl. | 2(2) |
c.1461+1G>T f | splice site | del exon 11 p.Ile439_Gln487del |
X91° | A0530 A0560 | [1, 24] unpubl. | 3(4) |
c.1461+2delT f | splice site | del exon 11? p.Ile439_Gln487del? |
X91? | [29] | 1(1) * | |
c. 1461+668_1462-807del15 58 |
deletion | intronic deletion; no phenotype |
het b,g | [68] | 1(1) * | |
c.1462-809_1586+819 del1753ins12 |
deletion/ insertion |
del exon 12 p.Ala488TyrfsX11 |
X91° | [1, 68] | 1(1) | |
c.1462-2A>G f | splice site | partial del exon 12 p.Ala488_Glu497del |
X91+ | A0078 A0104 A0531 |
[1, 92] unpubl. | 3(4) |
c.1462-2A>C f | splice site | (partial) del exon 12? p.Ala488_Glu497del? |
X91+ | unpubl. | 1(1) * | |
c.1462-1G>A f | splice site | altern. splicing exon 12 G del exon 12 > p.Ala488ProfsX14 |
X91° | A0532 | [1] | 1(1) |
c.1462-? f | splice site | del exon 12 p.Ala488TyrfsX11 |
X91° | [1,17] | 1(1) | |
c.1464delC | deletion | p.Asn489IlefsX13 | X91° | A0114 | [1,12,19] | 1(1) |
c.1484A>C | missense | p.His495Pro | X91− | unpubl. | 1(2) * | |
c.1488_1490delTGA | deletion | p.Asp496del | X91+ | unpubl. | 1(1) * | |
c.1497delA | deletion | p.Asp500MetfsX2 | X91° | A0312 | [1,17] | 1(1) |
c.1498G>A | missense | p.Asp500Asn | X91− | A0366 | unpubl. | 1(3) * |
c.1498G>C | missense | p.Asp500His | X91? | A0632 | [23,33] | 2(2) * |
c.1498G>T | missense | p.Asp500Tyr | X91+ | A0367 | [23, 56] | 2(3) * |
c.1499A>G | missense | p.Asp500Gly | X91+ | A0019 | [1, 93] | 1(1) |
c.1500T>G | missense | p.Asp500Glu | X91+ | [23] | 1(1) * | |
c.1509delA | deletion | p.Gly504AlafsX2 | X91° | [23] unpubl. | 2(2) * | |
c.1514T>G | missense | p.Leu505Arg | X91+ | A0408 A0573 | [35, 39] unpubl. | 3(3) * |
c.1514T>C | missense | p.Leu505Pro | X91− | A0407 | [1] | 1(2) |
c.1515 1525del11 | deletion | p.Lys506PhefsX9 | X91? | unpubl. | 1(1) * | |
c.1519C>T | nonsense | p.Gln507X | X91° | A0116 | [1,12,52] | 2(5) |
c. 1521_1525delAAAGA /ins |
deletion/ insertion |
p.Gln507_Thr509del /i nsHisIleTrpAla |
X91+ | A0068 | [1, 94] | 1(1) |
CATCTGGG | ||||||
c.1522_1523delAA | deletion | p.Lys508AspfsX10 | X91? | A0313 | [1] | 1(1) |
c.1523delA | deletion | p.Lys508ArgfsX25 | X91° | A0314 | [1,23,] | 2(3) |
c.1524 1527delGACT | deletion | p.Lys508AsnfsX24 | X91? | unpubl. | 1(1) * | |
c.1528_1529delTT | deletion | p.Leu510ValfsX8 | X91° | A0143 | [1,19] unpubl. | 3(3) |
c. 1532_1538delATGGACGi nsTTCA |
deletion/ insertion |
p.Tyr511_Arg513del/ insPheGln |
X91? | A0645 | [95] | 1(1) * |
c.1533T>A | nonsense | p.Tyr511X | X91° | [23] | 1(1) * | |
c.1546T>A | missense | p.Trp516Arg | X91? | [23] | 1(1) * | |
c.1546T>C | missense | p.Trp516Arg | X91° | A0494 | [1, 64] | 1(1) |
c.1547G>A | nonsense | p.Trp516X | X91° | A0570 | [35] unpubl. | 3(3) * |
c.1548G>T | missense | p.Trp516Cys | X91? | A0094 | [1,12,19] | 1(1) |
c.1548G>A | nonsense | p.Trp516X | X91° | A0295 A0296 | [1,19] unpubl. | 3(3) |
c.1549delG | deletion | p.Asp517IlefsX16 | X91° | unpubl. | 1(1) * | |
c.1555G>T | nonsense | p.Glu519X | X91° | A0059 | [1,33,55] | 1(1) |
c.1561A>T | nonsense | p.Lys521X | X91° | A0025 | [1,11] | 1(1) |
c.1565delC | deletion | p.Thr522LysfsX11 | X91° | A0326 | [1, 12, 34] | 1(1) |
c.1570 1586+?del | deletion | p.Ala524X | X91° | unpubl. | 1(1) * | |
c.1571C>T | missense | p.Ala524Val | X91° | [96] unpubl. | 2(2) * | |
c.1578delA | deletion | p.Gln526HisfsX7 | X91° | A0319 | [56] | 1(1) * |
c.1579dupC | insertion | p.His527ProfsX3 | X91° | [23] | 1(1) * | |
c.1585_1586+9del11 f | splice site | del 17 from 3’ exon 12 p.Ala524TyrfsX11 |
X91− | A0572 | [35] | 1(1) * |
c.1586+1G>C f | splice site | del exon 12? p.Ala488TyrfsX11? |
X91? | unpubl. | 1(1) * | |
c.1586+3A>T f | splice site | del exon 12? p.Ala488TyrfsX11? |
X91? | unpubl. | 1(1) * | |
c.1587-2A>G f | splice site | altern splicing G insert exon 13 > p.Asn529LysfsX12 |
X91° | A0533 | [1, 17, 61] unpubl. |
3(4) |
c.1598 1600delGAG | deletion | p.Gly533del | X91− | [28] unpubl. | 2(2) * | |
c.1600 1614del15 | deletion | p.Val534_Gly538del | X91− | A0329 | [1] | 1(1) |
c.1601T>A | missense | p.Val534Asp | X91? | A0147 | [1,12,19] | 1(1) |
c.1603_1609delTTCCTCT | deletion | p.Phe535ValfsX10 | X91° | unpubl. | 1(1) * | |
c.1607dupT | insertion | p.Cys537LeufsX4 | X91? | A0345 | [1] | 1(1) |
c.1609T>C | missense | p.Cys537Arg | X91+ | A0199 A0545 | [1, 12, 19, 41] unpubl. |
2(2) |
c.1611_1612delTG | deletion | p.Cys537TrpfsX3 | X91° | [23] | 1(1) * | |
c.1618delG | deletion | p.Glu540LysfsX7 | X91° | A0537 | [97] unpubl. | 2(3) * |
c.1622 1625dupCCTT | insertion | p.Leu542PhefsX4 | X91° | A0183 | [1,12,19] | 1(1) |
c.1625T>C | missense | p.Leu542Ser | X91° | A0082 | [1,19,26] | 1(1) |
c.1637T>C | missense | p.Leu546Pro | X91+ | A0409 | [1,26] | 1(1) |
c.1637T>G | missense | p.Leu546Arg | X91− | unpubl. | 1(1) * | |
c.1642A>T | nonsense | p.Lys548X | X91? | unpubl. | 1(1) * | |
c.1645C>T | nonsense | p.Gln549X | X91? | A0297 | [1,19] | 1(1) |
c.1658delA | deletion | p.Ser554LeufsX24 | X91? | unpubl. | 1(1) * | |
c.1661_1662delCT | deletion | p.Ser554X | X91? | [29] | 1(1) * | |
c.1662dupT | insertion | p.Glu555X | X91° | A0302 A0348 A0556 |
[1, 19, 24] unpubl. |
3 (5) |
c.1662 1663insGT | insertion | p.Glu555ValfsX23 | X91? | unpubl. | 1(1) * | |
c.1663 1693dup31 | insertion | p.Phe565X | X91? | A0300 | [1, 39, 79] | 2(2) |
c.1678G>T | nonsense | p.Gly560X | X91? | unpubl. | 1(1) * | |
c.1679delG | deletion | p.Gly560GlufsX17 | X91° | A0307 | [77, 80, 98] | 3(3) * |
c.1682-1712del31 | deletion | p.Val561AspfsX6 | X91° | A0155 | [1,12,19] unpubl. |
2(2) |
c.1694dupT | insertion | p.Asn566GlnfsX28 | X91− | unpubl. | 1(1) * | |
c.1702G>A | missense | p.Glu568Lys | X91+ | A0259 | [1,19,88] | 1(1) |
Acc. #, accession number in the X-CGD database (see text);
mutation added since last tabulation; unpubl., not previously published; ND, not determined; NA, not applicable; del, deletion; ins, insertion; dup, duplication; bp, base pairs; AA, amino acids; w.t., wild type.
Number of unrelated kindreds and (number of patients).
Female heteterozygote patient or female heterozygote relative of a deceased patient.
These promoter mutations lead to loss of gp91-phox expression on neutrophils and monocytes, but normal expression on eosinophils [14–16,18].
Corrected after consultation of the author.
Position of introns in CYBB: intron 1 c.45_46; intron 2 c.141_142; intron 3 c.252_253; intron 4 c. 337_338; intron 5 c.483_484; intron 6 c.674_675; intron 7 c.804_805; intron 8 c.897_898; intron 9 c. 1151_1152; intron 10 c.1314_1315; intron 11 c.1461_1462; intron 12 c.1586_1587.
This woman is a triple mosaic carrier of two different mutations and the wild-type of CYBB (68).
Due to unequal crossing over between a GT repetition at the 3’region of intron 5 and a GT repetition at the 5’region of intron 8 (Van Leeuwen, Stasia, et al., unpublished).
Two patients with c.388C>T (Kuhns et al., unpubl.), one patient with c.667G>T and one patient with c. 1384G>T [72] have somatic mosaicisms of cells with the mutated CYBB sequence and a small proportion of reverse mutated cells with the wild-type CYBB sequence.
This patient has a TMF1 retrogene insertion in CYBB intron 1, resulting in an extra exon between exon 1 and 2 in the CYBB mRNA. This extra exon contains TAG as the second codon (De Boer et al., unpublished).
Table 2.
Large (≥ 1 exon) deletions in the CYBB region known to cause X-linked CGD
Approximate size of deletion (associated disease) |
Affected exon(s) |
CGD Type |
Acc. # | Ref | Kin (pat) |
---|---|---|---|---|---|
∼6000 kb (+DMD, McLeod) | NA | X91° | unpubl. | 1(1)* | |
∼5650 kb (+DMD, RP, McLeod) | NA | X91° | [99] | 1(1)* | |
∼5,000 kb (+DMD, RP, McLeod) | NA | X91° | A0030 | [1, 100] | 1(1) |
∼4,000 kb (+ DMD, McLeod) | NA | X91° | A0031 | [1,101] | 1(1) |
∼3900 kb (+OTC, RP, McLeod) | NA | X91? | [102] | 1(1)* | |
∼3500 kb (+ OTC, McLeod) | NA | X91° | unpubl. | 1(1)* | |
913kb | del promoter_ exon 1 |
X91° | [1,12] | 1(1) | |
∼800 kb (+ McLeod) | NA | X91° | A0032 | [1, 103] | 1(1) |
∼800 kb (+McLeod) | NA | X91° | unpubl. | 1(1)* | |
∼550 kb (+McLeod) | NA | X91° | [20] | 1(1)* | |
∼500 kb (+RP, McLeod) | NA | X91° | [1, 104] | 1(1) | |
∼500 kb (+RP, McLeod) | NA | X91° | A0066 | [1,17] | 1(1) |
∼500 kb | NA | X91° | [20] | 1(1)* | |
ND (+ RP, McLeod) | NA | X91° | A0033 | [1, 105] | 1(1) |
∼450 kb (+McLeod) | NA | X91° | unpubl. | 3(4)a* | |
ND (+McLeod) | NA | X91° | unpubl. | 1(1)* | |
ND (+McLeod) | NA | X91° | [29] | 1(1)* | |
ND (+McLeod) | NA | X91° | [29] | 1(1)* | |
ND (+McLeod) | del exons 1_13 | X91? | [106] | 1(1)* | |
ND (+McLeod) | del exons 1_13 | X91? | [106] | 1(1)* | |
ND (+McLeod) | del exons 1_13 | X91? | [106] | 1(1)* | |
ND (+McLeod) | del exons 1_13 | X91? | [106] | 1(1)* | |
∼320 kb (+ DMD, McLeod) | NA | X91° | [1,12] | 1(1) | |
∼320 kb (+McLeod) | NA | X91° | unpubl. | 1(1)* | |
>300 kb (+McLeod) | del exons 1_13 | X91° | unpubl. | 1(1)* | |
>300 kb (+McLeod) | del exons 1_13 | X91° | unpubl. | 1(1)* | |
>150 kb (+McLeod) | del exons 1_13 | X91° | unpubl. | 1(1)* | |
>150 kb (+McLeod) | del exons 1_13 | X91° | unpubl. | 1(1)* | |
>100 kb (+McLeod) | del exons 1_3 | X91° | unpubl. | 1(1)* | |
>100 kb (+McLeod) | del exons 1_13 | X91° | [107] | 1(3)* | |
∼100 kb | del exons 1_13 | X91° | unpubl. | 1(1)* | |
∼80 kb | del exons 1_13 | X91° | unpubl. | 1(2)* | |
> 60 kb (+McLeod) | del exons 1_3 | X91? | [20] | 1(2)* | |
>>30 kb (+ DMD + McLeod) | NA | X91° | A0119 | [1,12] | 1(1) |
>27 kb (+McLeod) | del. exons 1_13 | X91o | A0035 | [1, 11, 19] | 1(1) |
>27 kb | del exons 1_13 a | X91° | A0034 A0036 A0037 A0038 b A0119 A0153 A0167 A0169 A0201 |
[1, 11, 12 , 20, 23, 29, 54] unpubl. |
30 a (32) |
25 kb | del promoter_ exon 7 |
X91° | [1, 17, 108, 109] |
1(1) | |
>20 kb | del exons 1_10 | X91° | A0039 b | [1,11] | 1(1) |
>20 kb | del exons 1_10 | X91° | unpubl. | 1(1)* | |
ND | del promoter_ exon 4 |
X91° | unpubl. | 1(1)* | |
∼19 kb | del exons 6_13 | X91° | [1] | 1(3) | |
>15 kb | del exons 4_13 | X91° | A0040 | [1,19] | 1(1) |
∼14 kb | del exons 4_9 | X91° | A0026 | [1, 34] | 1(1) |
>13 kb | del exons 6_13 | X91° | A0041 | [1, 110] | 1(2) |
>13 kb | del exons 6_13 | X91° | unpubl. | 1(1)* | |
ND | del exons 7_13 | X91? | unpubl. | 1(1)* | |
>10 kb | del exons 8_13 | X91° | A0042 | [1,11] | 1(1) |
>10 kb | del exons 8_13 | X91° | [1] | 1(1) | |
∼10 kb | del exons 7_12 | X91° (het b) |
unpubl. | 1(1)* | |
∼10kb | del exons 7_11 | X91° | [1] | 1(1) | |
>9 kb | del exons 9_13 | X91° | [1] | 1(1) | |
ND | del exons 6_8 | X91° | [29] | 1(1)* | |
ND | del. exons 4_6 | X91? | unpubl. | 1(1)* | |
7 kb | del exons 3_4 | X91° | [1,17] | 1(1) | |
>6.5 kb | del exons 11_13 | X91° | A0043 | [1,11] | 1(1) |
∼6 kb | del exons 12_13 | X91° | A0044 | [1, 67] | 1(1) |
>5.3 kb | del exons 1_3 | X91° | A0204 | [1,19] | 1(1) |
ND | del exons 1_3 | X91° | [56] | 1(2)* | |
∼4.3 kb | del exons 11_13 | X91° | A0172 A0173 | [1, 52] | 1(2) |
ND | del. exons 11–13 | X91? | unpubl. | 1(1)* | |
ND | del exons 7_8 | X91° | unpubl. | 1(1)* | |
∼3.5 kb | del exons 6_7 | X91° | A0028 c | [1,34,111] | 1(1) |
∼3.2kb | del exon 6 | X91° | [1] | 1(1) | |
∼3.2 kb | del exon 7 | X91? | A0205 | [1,11] | 1(1) |
∼3 kb | del exon 5 | X91° | A0027 c | [1,34,111] | 1(1) |
∼3 kb | del exon 7 | X91? | unpubl. | 1(2)* | |
∼2.2 kb | del exon 5 | X91° | A0206 | [1,19] | 1(1) |
∼2 kb | del exon 3 | X91° | [1] | 1(1) | |
∼2 kb | del exon 7 | X91° | [23] | 1(1)* | |
ND | del exon 3 | X91? | unpubl. | 1(1)* | |
∼2 kb | del promoter_ exon 1 |
X91° | [1] | 1(1) | |
ND | del promoter_ exon 1 |
X91? | [23] | 1(1)* | |
∼2 kb | del exon 8 | X91° | [1] unpubl. | 2(2)a | |
2 kb | del exons 12_13 | X91° | [1,17] | 1(1) | |
∼2 kb | del. exon 7 | X91° | [23] | 1(1)* | |
ND | del. exon 7 | X91? | unpubl. | 1(1)* | |
∼1.1 kb | del exon 6 | X91? | [23] | 1(2)* | |
∼1 kb | del intron 12_ 3’UTR |
X91° | A0203 | [1,101] unpubl. |
1(1) |
ND | del exon 9 | X91? | unpubl. | 1(1)* | |
ND | del. exon 9 | X91? | unpubl. | 1(1)* | |
0.35 kb | del exon 3 | X91° | [1] | 1(2) | |
0.22 kb | del promoter | X91° | [1] | 1(1) |
These mutations are not necessarily identical.
Patients A0038 and A0039 are brothers with different deletions.
Patients A0027 and A0028 are brothers with different deletions; their mother has both mutations and the wild-type CYBB sequence (triple mosaic) [34,111].
DMD, Duchenne muscular dystrophy; RP, X-linked retinitis pigmentosa; OTC, ornithine transcarbamylase deficiency; McLeod, McLeod hemolytic anemia; 3’UTR, 3’ untranslated region.
Table 3.
Known polymorphisms in the CYBB gene
Nucleotide change | Effect | Approximate frequency |
---|---|---|
c.-270C/A | N.A. | unknown [112] |
c.141+48C/G | N.A. | unknown (Maddalena, unpubl.) |
c.142–12C/T | N.A. | unknown (internet, unpubl.) |
c.484-60delT | N.A. | unknown (Jianxin He, unpubl.) |
c.484-4G/A | splice | unknown [1] |
c.654C/A | silent (p.Gly218) | 2% A in sub-Sahara Africans (internet, unpubl.) |
c.804+118A/G | N.A. | unknown (Maddalena, unpubl.) |
c.1002G/A | silent (p.Lys334) | 4% A in sub-Sahara Africans (internet, unpubl.) [1] |
c.1090G/C | p.364Gly/Arg | unknown [1,113] |
c.1414G/A | p.472Gly/Ser | 2% A in Asians (internet, unpubl.) |
c.1551T/A | p.517Asp/Glu | unknown (Hill, unpubl.) [1] |
c.1581C/T | silent (p.His527) | unknown (Di Matteo, unpubl.) |
Table 4.
Total number of kindreds with X-CGD patients, total number of X-CGD patients, total number of different mutations and total number of mutations unique for one kindred
Kindreds | Mutations | ||||
---|---|---|---|---|---|
Deletions | 281 | (22.2%) | 242 | (35.6%) | |
Insertions | 89 | (7.0%) | 54 | (7.9%) | |
Deletion/insertions | 19 | (1.5%) | 19 | (2.8%) | |
Splice site mutations | 247 | (19.5%) | 120 | (17.6%) | (2 undefined) |
Missense mutations | 246 | (19.4%) | 145 | (21.3%) | |
Nonsense mutations | 377 | (29.8%) | 96 | (14.1%) | |
Promoter mutations | 8 | (0.6%) | 5 | (0.7%) | |
Total 1267 unrelated kindreds with 1415 patients | Total 681 different mutations in the patients (all large deletions considered different). Of these 681 mutations, 498 (73.1%) are unique for one kindred. |
We have used the standard notation for differentiating the various phenotypes of X-linked CGD, X91°, X91−, and X91+, where the superscript denotes whether the level of gp91-phox protein is undetectable (°), diminished (−) or normal (+), as determined by immunoblot analysis and/or spectral analysis. The designation X91? indicates that the level of gp91-phox protein expression has not been determined. The respective proteins can be non-functional, exert residual activity, or in case of (−) be fully functional. The nucleotide numbering system we have used is based on the cDNA sequence and follows the convention that +1 is the A of the ATG initiator codon. This differs from the numbering of the GenBank sequence, which starts at A-12 (subtract 12 from GenBank sequence number to make the initiator A +1). Moreover, GenBank incorrectly denotes Met65 as the start codon of protein translation. The notation of the mutations follows the recommendations of the Human Genome Variation Society (8) (see also www.hgvs.org/mutnomen). The consequences of the mutations for protein composition have been checked with the Mutalyzer program (www.lovd.nl/mutalyzer) (9).
Acknowledgements
We thank the CGD Research Trust, London, UK, for financial support. LM thanks B. Tóth (Debrecen) for helpful contribution to this work. ACN thanks Edgar Borges de Oliveira Jr, PhD, for excellent work, and Fundação de Amparo a Pesquisa do Estado de São Paulo for financial support (FAPESP, Grant 2005/59568). This work was supported in part by the Slovenian Research Agency (Grant L3-0624). CK thanks Prof. M.A. Gougerot-Pocidalo for performing Western blot analysis of NADPH oxidase subunits and measurement of respiratory burst in patients’ polymorphonuclear neutrophils. DR thanks Dr. Paul Heyworth for providing information on unpublished mutations.
This project has been funded in part with federal funds from the National Cancer Institute, National Institutes of Health, under Contract No. HHSN261200800001E. The content of this publication does not necessarily reflect the views or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organizations imply endorsement by the U.S. Government.
Footnotes
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