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. Author manuscript; available in PMC: 2015 Mar 16.
Published in final edited form as: Blood Cells Mol Dis. 2010 Aug 21;45(3):246–265. doi: 10.1016/j.bcmd.2010.07.012

Hematologically important mutations: X-linked chronic granulomatous disease (third update)

Dirk Roos 1, Douglas B Kuhns 2, Anne Maddalena 3, Joachim Roesler 4, Juan Alvaro Lopez 5, Tadashi Ariga 6, Tadej Avcin 7, Martin de Boer 1, Jacinta Bustamante 8, Antonio Condino-Neto 9, Gigliola Di Matteo 10, Jianxin He 11, Harry R Hill 12, Steven M Holland 13, Caroline Kannengiesser 14, M Yavuz Köker 15, Irina Kondratenko 16, Karin van Leeuwen 1, Harry L Malech 17, László Marodi 18, Hiroyuki Nunoi 19, Marie-José Stasia 20, Anna Maria Ventura 21, Carl T Witwer 12, Baruch Wolach 22, John I Gallin 17
PMCID: PMC4360070  NIHMSID: NIHMS226211  PMID: 20729109

Abstract

Chronic Granulomatous Disease (CGD) is an immunodeficiency disorder affecting about 1 in 250,000 individuals. The disease is caused by a lack of superoxide production by the leukocyte enzyme NADPH oxidase. Superoxide is used to kill phagocytosed micro-organisms in neutrophils, eosinophils, monocytes and macrophages. The leukocyte NADPH oxidase is composed of five subunits, of which the enzymatic component is gp91-phox, also called Nox2. This protein is encoded by the CYBB gene on the × chromosome. Mutations in this gene are found in about 70% of all CGD patients. This article lists all mutations identified in CYBB in the X-linked form of CGD. Moreover, apparently benign polymorphisms in CYBB are also given, which should facilitate the recognition of future disease-causing mutations.

Keywords: gp91phox, chronic granulomatous disease, mutation, CYBB, NADPH oxidase, X-linked disease


The most common form of chronic granulomatous disease (CGD) is caused by mutations in the X-linked gene (CYBB, located at Xp21.1, OMIM *300481) for the protein gp91-phox (also known as Nox2). This protein is one of two subunits of flavocytochrome b558 (the other is p22-phox) and is an essential component of the phagocyte NADPH oxidase system. In previous tables we listed 343 mutations in CYBB known to cause X-linked CGD (X91 CGD; OMIM #306400) (1). In the present, updated tables 338 newly identified mutations have been added (marked with * in the last column). Mutations that have not been previously published elsewhere are marked as “unpubl.”. Table 1 includes missense mutations, nonsense mutations, splice site mutations, deletions and insertions that have been precisely defined. Mutations that lead to missplicing of mRNA, whether nucleotide substitutions, insertions or deletions, have all been tabulated as splice-site mutations. Table 2 includes larger deletions affecting the gp91phox gene, some of which also cause other diseases. Where possible we have cross-referenced the mutations indicated here with those in an X-CGD database that lists X91 CGD patients by accession number. This database contains additional biochemical, genetic and clinical information and is available at http://www.uta.fi/imt/bioinfo/CYBBbase/. Moreover, information can also be found in the HGMD database at http://www.hgmd.cf.ac.uk/ac/search.php. Additional information about these mutations and about CGD in general can also be found in recent reviews (2–6) and in the cited literature. An update article with the mutations causing the autosomal recessive forms of CGD has recently been published separately (7). Table 3 contains the known polymorphisms in CYBB. It is important to realize that SNPs and other sequence variants available on the internet are not necessarily functionally neutral. Table 4 summarizes the total number of kindreds with X-CGD patients included in this study, the total number of X-CGD patients, the total number of different mutations and the total number of mutations unique for one kindred, arranged according to type of mutation.

Table 1.

Mutations in the gp91phox gene CYBBthat cause X-linked CGD

cDNA Nucleotide
(or Splice Site) change
Mutation Amino acid
change
CGD
type
Accession
number
Ref. Kindr.
(pat.) a
c.-69A>C promoter NA X91 A0089 A0090 [1, 1012] 1(2)
c.-67T>C promoter NA X91 A0166 A0550
A0551 A0552
[1, 1013] 2(4)
c.-67dupT promoter NA X91d [14] 1(2) *
c.-65C>T promoter NA X91d A0472 A0548
A0549
[1, 1518] 2(3)
c.-64C>T promoter NA X91d A0546 [1, 1618]
unpubl.
2(5)
c.1A>G missense p.Met1Val; startcodon
lost
X91° A0242 [1, 1920]
unpubl.
4(4)
c.2T>A missense p.Met1Lys; startcodon
lost
X91 A0411 [1] 1(1)
c.2T>G missense p.Met1Arg; startcodon
lost
X91 A0412 [1] 1(1)
c.6dupG insertion p.Asn3GlufsX6 X91° A0346 [21] unpubl. 2(2) *
c.8dupA insertion p.Asn3LysfsX6 X91° [22] 1(1) *
c.11G>A nonsense p.Trp4X X91° A0260 A0490 [1, 11,23] 3(3)
c.12G>A nonsense p.Trp4X X91° A0108 A0491
A0492 A0493
[1, 12,19]
unpubl.
5(6)
c.14 27del14 deletion p.Val6LeufsX24 X91° A0305 [1] 1(1)
c.23_26dupAGGG insertion p.Leu10GlyfsX26 X91° A0334 [1] 1(1)
c.27delG deletion p.Leu10SerfsX12 X91? unpubl. 1(1) *
c.27dupG insertion p.Leu10AlafsX25 X91? A0557 [24] 1(1) *
c.40delG deletion p.Val14SerfsX8 X91° A0079 [1, 19,25] 1(1)
c.42_45dupCATT insertion p.Leu16HisfsX20 X91? A0619 [20] 1(1) *
c.45+1G>C f splice site del. exon 1?
p.Met1_Ile15del?
no start protein prod.
X91° A0223 [1, 26] 1(1)
c.45+1G>A f splice site del. exon 1?
p.Met1_Ile15del?
no start protein prod.
X91° A0592 [27, 28] unpubl. 3(3) *
c.45+1G>T f splice site del. exon 1?
p.Met1_Ile15del?
no start protein prod.
X91° [29] 1(1) *
c.45+1delG f splice site del. exon 1 X91° [30] 1(1) *
c.45+5G>A f splice site del. exon 1?
p.Met1_Ile15del
no start protein prod.
X91°/− A0003 [1, 11] unpubl. 2(2)
c.45+5_7delGTA f splice site del. exon 1?
p.Met1_Ile15del?
no start protein prod.
het b unpubl. 1(1) *
c.45+6T>C f splice site del. exon 1?
p.Met1_Ile15del?
no start protein prod.
X91 A0134 A0135 [1, 12, 19, 31] 1(2)
c.45+907_908ins∼5800 j insertion ins.117bp in mRNA
after exon 1 >
p.Leu16PheX
X91° unpubl. 1(1) *
c.46-14_-11delTTCT splice site del. exon 2 X91° unpubl. 1(1) *
insGAA f p.Leu16 Gly47del
c.46-11T>G f splice site del. exon 2?
p.Leu16_Gly47del?
X91° [23] 1(1)*
c.46-2A>G f splice site del. exon 2
p.Leu16_Gly47del
X91? A0498 A0499 [1] unpubl. 3(4)
c.46-1G>A f splice site del. exon 2
p.Leu16_Gly47del
X91° A0224 A0500 [1, 11,32] 2(2)
c.46-1G>T f splice site del. exon 2?
p.Leu16_Gly47del?
X91? A0593 [27] 1(1)*
c.46-1G>C f splice site del. exon 2
p.Leu16_Gly47del
X91? A0625 [33] 1(1)*
c.47delT deletion p.Leu16ArgfsX6 X91° A0214 [1, 4, 10, 34] 1(1)
c.49delG deletion p.Val17PhefsX5 X91° A0215 [1, 11] 1(1)
c.52dupT insertion p.Trp18LeufsX17 X91° A0349 [1] 1(1)
c.53G>A nonsense p.Trp18X X91°
1 het b
A0563 [23, 35] 2(2)*
c.54G>C missense p.Trp18Cys X91 A0083 [1, 11,36] 1(1)
c.58G>C missense p.Gly20Arg X91° A0136 A0376 [1, 11, 12, 37]
unpubl.
2(2)
c.58G>A missense p.Gly20Arg X91° A0647 [20]
unpubl.
2(2)*
c.66_70delCGTCTinsA deletion/
insertion
p.Asn22LysfsX38 X91° [1] 1(1)
c.64 67dupAACG insertion p.Val23GlufsX13 X91? A0298 [1, 11] 1(1)
c.80 83delTCTG deletion p.Val27GlyfsX33 X91° A0327 A0328 [1] unpubl. 5(5)
c.83G>A nonsense p.Trp28X X91°
1 het b
A0483 A0575
A0563
[1, 20,38]
unpubl.
4(4)
c.84G>A nonsense p.Trp28X X91°
1 het b
A0477 A0478 [39]
unpubl.
3(3)*
c.85delT deletion p.Tyr29IlefsX32 X91? unpubl. 1(1)*
c.90C>A nonsense p.Tyr30X X91? [29] 1(1)*
c.90_92delCCGinsGGT deletion/ insertion p.Tyr30X X91°
het b
[22, 40] 1(1)*
c.92_93insC insertion p.Val32GlyfsX3 X91° [39] unpubl. 1(2)*
c.94delG deletion p.Val32PhefsX29 X91° unpubl. 1(1)*
c.99T>A nonsense p.Tyr33X X91° A0024 [1, 11] 1(1)
c.105delT deletion p.Pro36HisfsX25 X91 unpubl. 1(1)*
c.112A>T nonsense p.Lys38X X91° unpubl. 1(1)*
c.121delT deletion p.Tyr41ThrfsX20 X91° A0018 [1, 11,34]
unpubl.
2 (2)
c.121dupT insertion p.Tyr41LeufsX62 X91° A0350 [1, 17] 1(1)
c.121T>G missense p.Tyr41Asp X91 A0495,A0544 [1, 41] 1(1)
c.125C>G missense p.Thr42Arg X91? unpubl. 1(1)*
c.
126_130delAAGAAinsTT
TC
deletion/
insertion
p.Arg43PhefsX18 X91? unpubl. 1(1)*
c.127A>T nonsense p.Arg43X X91° A0261 [1, 11, 20]
unpubl.
3(3)
c.134T>G missense p.Leu45Arg X91 unpubl. 1(1)*
c.141+1delG f splice site del. exons 2 + 3
p.Leu16_Ala84del
X91° A0216 [1, 11,19] 1(1)
c.141+1G>A f splice site del. exon 2
p.Leu16_Gly47del
X91° A0131 A0502
A0503
[1, 12,19, 42]
unpubl.
5(5)
c.141+1G>T f splice site del. exon 2
p.Leu16_Gly47del
X91° A0138 A0154 [1, 12,37]
unpubl.
5(5)
c.141+2T>C f splice site del exon 2
p.Leu16_Gly47del
X91° A0506 [1] unpubl. 3(3)
c.141+2T>G f splice site del exon 2
p.Leu16_Gly47del
X91? A0501 A0504
A0505
[1, 12] 3(3)
c.141+5G>A f splice site del exon 2
p.Leu16_Gly47del
X91° [1, 26] unpubl. 2(2)
c.141+5G>T f splice site del exon 2
p.Leu16_Gly47del
X91° A0615 [20] unpubl. 2(2) *
c.141+5_+6delGT f splice site del exon 2?
p.Leu16_Gly47del?
X91? A0225 [1, 11] 1(1)
c.142–12_-28del17 f splice site del exon 3
p.Ser48_Ala84del
X91° [1] 1(1)
c.142-12C>T f splice site del exon 3?
p.Ser48_Ala84del?
X91° unpubl. 1(1) *
c.142-12delC
insACCTCTTCTAG f
splice site del exon 3?
p.Ser48_Ala84del?
X91° unpubl. 1(1) *
c.142-2A>G f splice site del. exon 3
p.Ser48_Ala84del
X91° A0105 [1, 43] 1(1)
c.142-2A>T f splice site
(created)
del TCAG from exon 3
p.Ile15TrpfsX6
X91° [1] 1(1)
c.142-1G>C f splice site del. exon 3?
p.Ser48_Ala84del?
X91° [42] 1(2) *
c.142-1G>A f splice site del. exon 3 + w.t.
p.Ser48_Ala84del
X91? A0616 [20] 1(1) *
c.142_159del18/
insCCTGCCTGAATTTC
(dup173_186)T e
deletion/
insertion
splice site?
p.Ser48_Ala53del
insProAlaX
X91° A0599 A0600
A0601
[27]
unpubl.
1(3) *
c.143C>G e nonsense p.Ser48X X91° [28] unpubl. 2(2) *
c.158C>A missense p.Ala53Asp X91 A0050 A0352 [1, 11] 1(2)
c.159dupC insertion p.Arg54GlnfsX49 X91° A0160 [1, 12,19]
unpubl.
1(1)
c.160 165delAGGGCC deletion p.Arg54_Ala55del X91° A0322 [39] unpubl. 2(2) *
c.160A>G missense p.Arg54Gly X91+ A0243 [1, 19] 1(1)
c.161G>T missense p.Arg54Met X91+ A0455 [1, 17,44] 2(2)
c.162G>C missense p.Arg54Ser X91+ A0133 [1, 11,45, 46] 1(1)
c.164C>A missense p.Ala55Asp X91° A0353 [1, 23,44]
unpubl.
3(3)
c.167C>T missense p.Pro56Leu X91 A0244,A0245 A0304 [1, 11, 47𠄓49] 2(3)
c.170C>A missense p.Ala57Glu X91+ A0069 [1, 4, 17, 44,
50] unpubl.
2(2)
c.175T>C missense p.Cys59Arg X91° A0175, A0176 [1, 12,19]
unpubl.
2(3)
c.176G>T missense p.Cys59Phe X91 A0362 [1] 1(1)
c.176G>A missense p.Cys59Tyr het b A0363 [1] 1(1)
c.177C>G missense p.Cys59Trp X91° A0246 A0541 [1, 19,39] 2(2)
c.177C>A nonsense p.Cys59X X91° unpubl. 1(1) *
c.185delT deletion p.Phe62SerfsX5 X91° A0614 [20] 1(1) *
c.189C>G missense p.Asn63Lys X91° A0413 A0414 unpubl. 2(3) *
c.190T>C missense p.Cys64Arg X91° A0247 [1,19]
unpubl.
2(2)
c.192C>A nonsense p.Cys64X X91° A0364 [1,27] 1(1)
c.194T>G missense p.Met65Arg X91° unpubl. 1(2) *
c.195dupG insertion p.Leu66AlafsX37 X91° A0196 A0197 [1,11,12] 1(2)
c.197T>C missense p.Leu66Pro X91? [28] 1(1) *
c.210dupA insertion p.Val71SerfsX32 X91? unpubl. 1(1) *
c.217C>T nonsense p.Arg73X X91°
1 het b
A0008 A0188
A0262 A0263
A0456 A0457
A0458 A0459
A0567
[1, 11, 17, 26,
38, 39, 5153]
unpubl.
25(25)
c.226delC deletion p.Leu76CysfsX32 X91? unpubl. 1(2) *
c.242delG deletion p.Gly81ValfsX27 X91° A0011 [1,11]
unpubl.
2(2)
c.242dupG insertion p.Ser82PhefsX21 X91° unpubl. 1(1) *
c.251delC (3’ end of exon
3) f
splice site del. exon 3
p.Ser48_Ala84del
X91° A0110 [1, 12, 52, 54] 1(1)
c.252G>A (3’end of exon
3) f
splice site del. exon 3
p.Ser48_Ala84del
X91°/−
1 het b
A0022 A0063
A0100 A0127
A0193 A0226
A0227 A0228
A0229 A0230
A0231 A0354
A0355 A0356
A0357 A0534
A0577 A0578
A0633 A0634
A0642
[1, 11, 12, 17,
20, 23, 29, 33,
38, 49, 5558]
unpubl.
44(53)
c.252G>T (3’ end of exon
3) f
splice site del. exon 3
p.Ser48_Ala84del
X91? [23] unpubl. 2(2) *
c.252+1G>A f splice site del. exon 3
p.Ser48_Ala84del
X91° A0510 [1,42] unpubl. 3(3)
c.252+1G>T f splice site del exon 3
p.Ser48_Ala84del
X91° A0509 [1] 1(1)
c.252+1G>C f splice site del exon 3
p.Ser48_Ala84del
X91? unpubl. 1(1) *
c.252+2T>C f splice site del exon 3?
p.Ser48_Ala84del?
X91? unpubl. 1(1) *
c.252+2dupT f splice site del exon 3
p.Ser48_Ala84del
X91° [1] 2(2)
c.252+5G>A f splice site del exon 3
p.Ser48_Ala84del
X91° A0023 A0507
A0508 A0594
[1, 27, 29, 32]
unpubl.
8(10)
c.252+5G>C f splice site del exon 3?
p.Ser48_Ala84del?
X91° A0148 [1,12,54] 1(1)
c.253-875_336+∼800del f deletion del exon 4
p.Cys85_Ser112del
X91° [1] 1(1)
c.253–8A>G f splice site
(created)
insTCCAAAG into
exon 4
p.Cys85SerfsX20
X91° [1,12] 1(1)
c.253–3A>G f splice site
(created)
insAG into exon 4
p.Cys85SerfsX24
het b [59] unpubl. 2(2) *
c.253–1G>A f splice site del14 from exon 4 X91? A0626 [33, 55] unpubl. 2(2) *
(created) p.Cys85SerfsX13
c.253–1G>T f splice site del exon 4?
p.Cys85ArgfsX15?
X91? unpubl. 1(1) *
c.255C>A nonsense p.Cys85X X91° A0365 [1] 1(1)
c.262_263ins2.1 kb insertion p.Thr88LysX? c X91° A0299 [1, 19, 60] 1(1)
c.271C>T nonsense p.Arg91X X91°
1 hetb
A0029 A0149
A0178 A0264
A0265 A0266
A0460 A0461
A0462 A0463
A0464 A0643
[1, 11, 12, 17,
22, 43, 53, 61,
62] unpubl.
24(25)
c.275delG deletion p.Arg92AsnfsX16 X91? unpubl. 1(1) *
c.286_290dupAGGAA insertion p.Asn97LysfsX13 X91° [39] 1(1) *
c.295delA deletion p.Thr99ProfsX9 X91° A0097 [1,11,12] 1(1)
c.296_306del11insTCC deletion/
insertion
p.Thr99IlefsX21 X91° unpubl. 1(3) *
c.301C>T missense p.His101Tyr X91 A0381 [1, 17, 63, 64] 1(1)
c.302A>G missense p.His101Arg X91°
1 het b
A0017 A0248 [1, 11, 51] 2(2)
c.318G>A nonsense p.Trp106X X91° A0015 A0479
A0586
[1, 11, 27, 61] 3(3)
c.320T>G missense p.Met107Arg X91 A0410 unpubl. 2(2) *
c.321dupG insertion p.Ile108AspfsX15 X91° A0057 [1,11] 1(1)
c.327_328delAC deletion p.Leu110SerfsX12 X91° A0210 [1,11] unpubl. 2(2)
c.330 331delTC deletion p.His111LeufsX11 X91? unpubl. 1(1) *
c.330_331delTCinsAT deletion/
insertion
p.His111Tyr X91° unpubl. 1(1) *
c.334T>C missense p.Ser112Pro X91? [28] 1(1) *
c.337+1G>C f splice site del exon 4?
p.Cys85ArgfsX15?
X91? A0595 [27] 1(1) *
c.337+1G>A f splice site del exon 4?
p.Cys85ArgfsX15?
X91? unpubl. 1(1) *
c.337+1G>T f splice site del exon 4
p.Cys85ArgfsX15
X91° unpubl. 1(1) *
c.337+2dupT f splice site del exon 4?
p.Cys85ArgfsX15?
X91? unpubl. 1(1) *
c.337+5dupG f splice site del exon 4?
p.Cys85ArgfsX15?
X91° unpubl. 1(1) *
c.338-2A>C f splice site del exon 5?
p.Ala113GlufsX3?
X91° A0232 [1,19] 1(1)
c.338-2A>G f splice site del. exon 5
p. Ala113GlufsX3
X91° A0514 [1,29] unpubl. 2(2)
c.338-1G>A f splice site del exon 5
p. Ala113GlufsX3
X91° A0512 A0513 [1,17,44]
unpubl.
2(2)
c.339delG deletion p.Ile114PhefsX14 X91° unpubl. 1(1) *
c.343C>T missense p.His115Tyr X91? A0383 unpubl. 1(1) *
c.345C>A missense p.His115Gln X91? A0382 [1] 1(1)
c.354delA deletion p.His119IlefsX9 X91° A0103 [1,12,19] 1(1)
c.356dupA insertion p.His119GlnfsX4 X91° A0007 [1,11] 1(1)
c.356A>G missense p.His119Arg X91° A0384 A0385 [1,12] 2(2)
c.359T>C missense p.Leu120Pro X91° A0249 [1,11] 1(1)
c.360 375del16 deletion p.Phe121ValfsX2 het b unpubl. 1(1) *
c.370G>T nonsense p.Glu124X X91° unpubl. 1(1) *
c.374G>A nonsense p.Trp125X X91? unpubl. 1(1) *
c.375G>A nonsense p.Trp125X X91° A0564 [35] 1(1) *
c.375G>T missense p.Trp125Cys X91? A0480 [1] 1(1)
c.382_385dupAATG insertion p.Ala129GlufsX6 X91° unpubl. 1(1) *
c.388delC deletion p.Arg130GlufsX10 X91? [22] unpubl. 2(2) *
c.388C>T nonsense p.Arg130X i X91°
2 het b
A0065 A0113
A0267 A0268
A0269 A0270
A0271 A0272
A0427 A0428
A0429 A0430
A0431 A0432
A0587 A0596
[1, 11, 12, 17,
20, 22, 23, 27,
39, 49, 65]
unpubl.
41(44)
c.388 389insT insertion p.Arg130LeufsX4 X91° A0080 [1,19] 1(1)
c.389G>C missense p.Arg130Pro X91° unpubl. 1(1) *
c.389G>T missense p.Arg130Leu + partial
outsplicing exon 5
X91 unpubl. 1(1) *
c.394_406del13 deletion p.Asn132LeufsX4 X91 unpubl. 1(1) *
c.398delA deletion p.Asn133IlefsX7 het b A0543 [66] 1(1) *
c.411T>A nonsense p.Tyr137X X91? unpubl. 1(1) *
c.412 418delTCAGTAG deletion p.Ser138HisfsX21 X91° unpubl. 1(1) *
c.413C>A nonsense p.Ser138X X91° unpubl. 2(2) *
c.422T>C missense p.Leu141Pro X91° A0559 [23, 24] 2(2) *
c.424T>C missense p.Ser142Pro X91° A0465 [1] unpubl. 2(2)
c.425C>T missense p.Ser142Phe X91° [42] 1(1) *
c.425 426delCT deletion p.Ser142X X91° unpubl. 1(2) *
c.439 440delAG deletion p.Arg147AlafsX3 X91? [27] 1(1) *
c.442C>T nonsense p.Gln148X X91° A0273 A0420 [1, 17, 52]
unpubl.
3(3)
c.442_443delCAinsT deletion/
insertion
p.Gln148X X91° A0111 [1,52] 1(1)
c.446dupA insertion p.Asn149LysfsX2 X91° A0139 [1,12,52] 1(1)
c.448G>T nonsense p.Glu150X het b unpubl. 1(1) *
c.450 451delAA deletion p.Ser151fsX13 X91° unpubl. 1(1) *
c.455 456delAT deletion p.Tyr152SerfsX12 X91° A0332 [1] 1(1)
c.456T>A nonsense p.Tyr152X X91° A0124 A0644 [1, 12, 19, 62] 2(2)
c.458T>G missense p.Leu153Arg X91° unpubl. 1(2) *
c.461delA deletion p.Asn154IlefsX7 X91° unpubl. 1(1) *
c.466G>A missense p.Ala156Thr X91 A0055 A0137
A0187
[1, 11, 12, 51,
52]
3(3)
c.469C>T nonsense p.Arg157X X91°
1 hetb
A0074 A0075
A0095 A0098
A0152 A0177
A0274 A0275
A0276 A0277
A0433 A0434
A0565 A0566
A0567 A0568
[1, 11, 12, 20,
23, 35, 43, 44,
61, 67] unpubl.
26(30)
c.472_475delAAGA deletion p.Lys158GlufsX2 X91° A0311 [1] 1(1)
c.475_481delAGAATAA e deletion p.Ile160ThrfsX10 X91? [28] 1(1) *
c.479dupT insertion p.Asn162GlufsX3 X91? A0335 [1] 1(1)
c.482A>G (3’end of exon
5) f
splice site multiple splice
products
X91 A0179 A0180 [1,52] 1(2)
c.482_483+4 delAGGTAA
f
splice site del exon 5?
p. Ala113GlufsX3?
X91° A0181 [1,12] 1(1)
c.483G>T (3’end of exon
5) f
splice site del exon 5
p. Ala113GlufsX3
X91° A0233 [1,11] 1(1)
c.483+1G>A f splice site del exon 5
p. Ala113GlufsX3
X91° A0515 [1, 23, 42]
unpubl.
4(5)
c.483+1G>T f splice site del exon 5
p. Ala113GlufsX3
X91° A0115 A0234
A0516 A0517
[1, 11, 12, 19,
49] unpubl.
6(6)
c.483+2T>C f splice site del exon 5?
p Ala113GlufsX3?
X91° A0164 [1, 43] 1(1)
c.483+3A>T f splice site del exon 5
p. Ala113GlufsX3
X91° A0009 [1, 32] 1(1)
c.483+5G>A f splice site del exon 5?
p Ala113GlufsX3?
X91 A0140 A0141 [1,19,26] 1(2)
c.483+978G>T f splice site
(created)
ins parts of intron 5
multiple splice
products
X91? A0606 [68, 69] 2(2) *
c.483+1880_+1881ins836
c,f
splice site
(created)
multiple splice
products
X91° [1, 70] 1(1)
c.484-100_674+291del581
f
deletion del. exon 6
(p.Asn162ThrfsX15
X91? [20] 1(1) *
c.484-?_897+?dup h insertion p.Asn162_Lys299dup X91° unpubl. 1(1) *
c.484-3C>A f splice site del exon 6
p.Asn162ThrfsX15
X91 unpubl. 1(2) *
c.484-2A>T f splice site del exon 6?
p.Asn162ThrfsX15?
X91? unpubl. 1(1) *
c.517delC deletion p.Leu173CysfsX16 X91° A0217 [1,11] 1(1)
c.535G>A missense p.Gly179Arg X91° A0375 [1,25] 1(1)
c.535G>T nonsense p.Gly179X X91° unpubl. 2(2) *
c.536G>A missense p.Gly179Glu X91? unpubl. 1(1) *
c.548 559del12 deletion p.Thr183_Leu186del X91? unpubl. 1(1) *
c.553T>C missense p.Cys185Arg X91? unpubl. 1(1) *
c.554delG deletion p.Cys185SerfsX4 X91° A0218 [1,19] 1(1)
c.555C>A nonsense p.Cys185X X91° A0182 A0358 [1,12,19]
unpubl.
3(3)
c.555_560dupCCTCAT insertion p.Leu188 Ile189dup X91? A0585 [27] 1(1) *
c.
5561_569delATTAATTA
T
deletion p.Leu188_Ile190del X91 [1] 1(1)
c.565_568delATTA deletion p.Ile189SerfsX24 X91° A0309 [1] unpubl. 3(3)
c.
573_581dupTTCCTCCAC
insertion p.Thr191_Ser193dup X91 unpubl. 1(1) *
c.577T>C missense p.Ser193Pro X91° A0627 [23,33] unpubl. 3(3) *
c.578C>T missense p.Ser193Phe X91 A0466 [1,27] unpubl. 2(2)
c.583 588dupAAAACC insertion p.Lys195_Thr196
dup
X91 unpubl. 1(1) *
c.591_592ins41 insertion p.Arg198ThrfsX30 X91° [1] 1(1)
c.592delC deletion p.Arg198GlyfsX16 X91° unpubl. 1(1) *
c.595delA deletion p.Arg199GlyfsX15 X91° A0320 [1,12] 1(1)
c.597_604dup8 e insertion p.Phe202CysfsX15 X91? [28] 1(1) *
c.603C>G nonsense p.Tyr201X X91? unpubl. 1(1) *
c.603delC deletion p.Phe202LeufsX12 X91° A0333 [1] 1(1)
c.606_608delTGAinsGG deletion/
insertion
p.Phe202LeufsX12 X91° [1,17] 1(1)
c.607G>T nonsense p.Glu203X X91° A0278 [1,11] unpubl. 2(2)
c.613T>A missense p.Phe205Ile X91° A0060 [1,33,55] 1(1)
c.614 632del19 deletion p.Phe205SerfsX4 X91° unpubl. 1(2) *
c.618G>A nonsense p.Trp206X het b unpubl. 1(1) *
c.621C>A splice site (created) del. part exon 6
p.Tyr207X
X91° A0012 [1, 11, 32] 1(1)
c.625C>T missense p.His209Tyr X91-/o A0006 A0387
A0388 A0389
[1, 11, 50]
unpubl.
5(5)
c.625 626delCA deletion p.His209SerfsX16 X91? A0211 [1,19] 1(1)
c.626A>G missense p.His209Arg X91° A0386 [1,17] unpubl. 2(2)
c.627T>A missense p.His209Gln X91° A0125 [1, 12, 23, 52] 2(2)
c.628_631dupCATC insertion p.Leu211ProfsX16 X91°
het b
A0597 [65] 1(1) *
c.632T>C missense p.Leu211Pro X91? unpubl. 1(1) *
c.632T>G missense p.Leu211Arg het b unpubl. 1(1) *
c.636delT deletion p.Phe212LeufsX1 X91° [29] unpubl. 2(2) *
c.646_648delTTC deletion p.Phe216del X91 A0010 A0058
A0085
[1,19, 47, 55,
71]
3(3)
c.664C>A missense p.His222Asn X91° A0390 [1,12] 1(1)
c.664C>T missense p.His222Tyr X91° A0394 [1,12] 1(1)
c.665A>G missense p.His222Arg X91° A0250 A0391
A0392 A0393
[1, 11, 12, 23,
26] unpubl.
6(6)
c.665A>T missense p.His222Leu X91? unpubl. 1(1) *
c.667G>T nonsense p.Gly223X i X91° [72] 1(1) *
c.667_668delGG/insTT deletion/
insertion
p.Gly223Leu X91? A0109 [1,12,19] 1(1)
c.671C>G missense p.Ala224Gly X91° A0351 [1,17] 1(1)
c.674A>T missense p.Glu225Val X91° [42, 61] 2(2) *
c.674+1G>T f splice site del exon 6?
p.Asn162ThrfsX15?
X91° unpubl. 1(1) *
c.674+1G>A f splice site del exon 6
p.Asn162ThrfsX15
X91° unpubl. 2(2) *
c.674+3G>C f splice site del exon 6?
p.Asn162ThrfsX15
X91? unpubl. 1(1) *
c.674+4A>G f splice site del exon 6
p.Asn162ThrfsX15
X91° [29] unpubl. 2(2) *
c.674+4A>T f splice site del exon 6?
p.Asn162ThrfsX15
X91° unpubl. 1(2) *
c.674+4A>C f splice site del. exon 6?
p.Asn162ThrfsX15?
X91? [28] 1(2) *
c.674+4_+7delAGTG f splice site multiple splice
products
X91° A0106 [1,12,19]
unpubl.
5(6)
c.674+5G>A f splice site del exon 6
p.Asn162ThrfsX15
X91? A0235 [1,11] 1(1)
c.674+5G>C f splice site del exon 6
p.Asn162ThrfsX15
X91° A0519 A0561
A0562
[1,42] 4(7)
c.674+6T>A f splice site del exon 6?
p.Asn162ThrfsX15?
X91° A0518 [1,12] 1(1)
c.674+6T>C f splice site del exon 6
p.Asn162ThrfsX15
X91? unpubl. 1(1) *
c.674+?_804+?del f deletion del exon 7
p.Arg226LeufsX5
X91° [20] 1(1) *
c.674+921A>G f splice site
(created)
ins 56 of intron 6 into
mRNA
p.Glu225AspfsX2
X91? A0581 [73] 1(1) *
c.675-999A>G f splice site
(created)
ins 94 of intron 6 into
mRNA
multiple splice
products
X91° [1, 74] 1(1)
c.675-24_690dup40 insertion p.Gln231SerfsX23 X91° A0301 [1, 75] 1(1)
c.675-2A>C f splice site del exon 7?
p.Arg226LeufsX5?
X91° unpubl. 1(1) *
c.675-1G>A f splice site del exons 6_7
p.Asn162_Met268del
X91° unpubl. 1(1) *
c.676C>T nonsense p.Arg226X X91°
1 het b
A0132, A0150,
A0279, A0280
A0281, A0282,
A0283, A0284
A0435 A0436
A0437 A0438
A0439 A0440
A0441 A0442
A0588
[1, 11, 12, 17,
22, 23, 27, 39,
53, 76, 77]
unpubl.
57(63)
c.691C>T nonsense p.Gln231X X91°
1 het b
A0421 A0422 [1, 20, 39]
unpubl.
4(4)
c.700G>T nonsense p.Glu234X X91° A0607 [78] 1(1) *
c.703_704delAG deletion p.Ser235PhefsX5 X91° A0120, A0212
A0323
[1, 11, 29, 52,
53] unpubl.
5(5)
c.706_707dupTT insertion p.Leu236PhefsX7 X91° A0344 [1,17,44] 1(1)
c.713delT deletion p.Val238GlyfsX4 X91? A0628 [33] 1(1) *
c.716 720delATAAT deletion p.Ile241SerfsX3 X91° A0117 [1,12,52] 1(1)
c.730T>A missense p.Cys244Ser X91? [29] 1(1) *
c.730T>C missense p.Cys244Arg X91 A0171 [1,12,52]
unpubl.
2(2)
c.730T>G missense p.Cys244Gly X91 A0359 [26] 1(1) *
c.731G>C missense p.Cys244Ser X91 A0251 [1,11,49,51] 1(1)
c.731G>A missense p.Cys244Tyr X91 A0252 [1, 61, 79]
unpubl.
3(3)
c.732T>A nonsense p.Cys244X het b [23] 1(1) *
c.733G>T nonsense p.Glu245X X91° unpubl. 1(1) *
c.736C>T nonsense p.Gln246X X91° A0122 A0123
A0186 A0423
[1, 12, 19, 23,
78] unpubl.
7(10)
c.740_741delAAinsT deletion/
insertion
p.Lys247IlefsX8 X91° A0021 [1,19] 1(1)
c.742dupA insertion p.Ile248AsnfsX36 X91°
1 het b
A0002 A0061
A0062 A0121
[1, 11, 12, 17,
23, 33, 52, 54
30(32)
A0126 A0146
A0162 A0170
A0189 A0337
A0338 A0339
A0340 A0341
A0342 A0343
A0602 A0603
A0604
[55] unpubl.
c.752G>A nonsense p.Trp251X X91° A0285 [1,11] unpubl. 2(2)
c.754G>T nonsense p.Gly252X X91? unpubl. 1(1) *
c.755delG deletion p.Gly252GlufsX3 X91° A0195 A0219
A0220
[1, 12, 19, 20]
unpubl.
4(5)
c.755_756delGA deletion p.Gly252GlufsX31 X91° [42] 1(1) *
c.760dupA insertion p.Ile254AsnfsX30 X91° A0128 [1,12,54] 1(1)
c.769T>C missense p.Cys257Arg X91° unpubl. 1(2) *
c.773delC deletion p.Pro258GlnfsX11 X91° [42] 1(1) *
c.771C>A nonsense p.Cys257X het b [1] 1(1)
c.779C>G missense p.Pro260Arg X91° unpubl. 1(1) *
c.781 782delCA deletion p.Gln261ValfsX22 X91° A0001 [1,11] 1(1)
c.781C>T nonsense p.Gln261X X91° A0020 A0286
A0424 A0425
[1,11]
unpubl.
5(5)
c.
785_804+1dup21del9ins2 f
splice site del. exon7
p.Arg226LeufsX5
X91? unpubl. 1(1) *
c.788delC deletion p.Ala263ValfsX6 X91° A0582 [27] 1(1) *
c.797delC deletion p.Pro266LeufsX3 X91° A0316 [1,23,] 2(2)
c.799_800insAA insertion p.Pro267GlnfsX3 X91? unpubl. 1(1) *
c.804+1G>A f splice site del exon 7
p.Arg226LeufsX5
X91° A0522 [1, 77, 80] 2(2)
c.804+1G>T f splice site del exon 7
p.Arg226LeufsX5
X91° A0523 [1] unpubl. 3(3)
c.804+2T>A f splice site del. exon 7
p.Arg226LeufsX5
X91° A0005 [1, 32] 1(1)
c.804+2T>C f splice site del. exon 7
p.Arg226LeufsX5
X91° A0236 A0237 [1,11] unpubl. 3(4)
c.805-2A>C f splice site del exon 8?
p.Thr269_Lys299del?
X91° A0238 [1,19] 1(1)
c.805-2A>T f splice site del. exon 8?
p.Thr269_Lys299del?
X91° unpubl. 1(1) *
c.805-2A>G f splice site del exon 8
p.Thr269_Lys299del
X91° A0520 [1,17,44] 1(1)
c.805-1G>A f splice site del exon 8?
p.Thr269_Lys299del?
X91° A0521 [1,12] unpubl. 2(2)
c.805-1G>C f splice site del. exon 8?
p.Thr269_Lys299del?
X91? unpubl. 1(1) *
c.805-? f splice site del exon 8
p.Thr269_Lys299del
X91° [1,25] 1(1)
c.810G>A nonsense p.Trp270X X91° A0624 [53] unpubl. 2(2) *
c.811A>T nonsense p.Lys271X X91° unpubl. 1(1) *
c.815G>A nonsense p.Trp272X X91° A0099 A0287
A0482
[1,12,19] 3(3)
c.816G>A nonsense p.Trp272X X91° A0047 [1,11] 1(1)
c.831_853del23 deletion p.Met277IlefsX63 X91? unpubl. 1(1) *
c.840T>A nonsense p.Tyr280X X91? unpubl. 1(1) *
c.844_874del31 deletion p.Cys282AsnfsX21 X91° A0536 unpubl. 1(1) *
c.845dupG insertion p.Cys282TrpfsX2 X91° unpubl. 1(1) *
c.867G>A nonsense p.Trp289X het b [81] 1(1) *
c.868C>T nonsense p.Arg290X X91°
2 hetb
A0045 A0046
A0145 A0159
A0194 A0198
A0288 A0289
A0443 A0444
A0445 A0446
A0447 A0448
A0449 A0450
A0451 A0452
A0453 A0639
[1, 11, 12, 20,
23, 29, 33, 39,
42, 43, 49, 53,
61] unpubl.
38(42)
c.871 880del10 deletion p.Ser291ArgfsX19 X91° A0321 [1,17] 1(1)
c.883 887dupGTGGT insertion p.Ile297TrpfsX18 X91? unpubl. 1(1) *
c.890_904del15 deletion p.Ile297_Val301del X91+ A0310 [1,25] 1(1)
c.894delC deletion p.Lys299ArgfsX14 hetb [82] 1(2) *
c.897G>C missense
splice site?
p.Lys299Asn X91 unpubl. 1(1) *
c.897G>T missense
splice site?
p.Lys299Asn X91? A0402 [1] 1(1)
c.897G>A (3’end of exon
8) f
splice site del exon 8
p.Thr269_Lys299del
X91? [23] unpubl. 2(2) *
c.897+1G>A f splice site del exon 8
p.Thr269_Lys299del
X91° A0524 [1,29] 2(2)
c.897+1G>T f splice site del. exon 8
p.Thr269_Lys299del
X91° A0239 A0240
A0303
[1,11,23] 3(4)
c.898-1G>A f splice site del exon 9?
p.Val300AspfsX4?
X91? unpubl. 2(2) *
c.903dupC insertion p.Thr302HisfsX46 X91° unpubl. 1(1) *
c.904A>C missense p.Thr302Pro X91? [23] 1(1) *
c.906 909delTCAC deletion p.His303LeufsX9 X91? unpubl. 1(1) *
c.907C>T missense p.His303Tyr X91+ unpubl. 1(1) *
c.[907C>A;911C>G] missense p.[His303Asn;
Pro304Arg]
X91+ A0538 [1, 83, 84] 1(2)
c.909C>A missense p.His303Gln X91° unpubl. 1(7) *
c.911C>T missense p.Pro304Leu X91? unpubl. 1(2) *
c.915delC deletion p.Phe305LeufsX8 X91? A0558 [24] 1(1) *
c.916A>T nonsense p.Lys306X X91° A0290 [1,11] 1(1)
c.919A>C missense p.Thr307Pro X91° A0469 A0590 [27, 39] 2(2) *
c.919delA deletion p.Thr307ProfsX6 X91° A0221 [1,11] 1(1)
c.[922 923insCCTTTCA;
935_937delTGA] e
deletion/
insertion
p.Ile308ProfsX39 X91? [1,12] 1(1)
c.922 923insGTTTC insertion p.Ile308SerfsX7 X91° [39] 1(1) *
c.925G>A missense p.Glu309Lys X91 A0101 A102
A0368 A0369
A0370 A0371
A0372
[1, 17, 20, 43]
unpubl.
9(15)
c.925G>T nonsense p.Glu309X X91° unpubl. 1(2) *
c.929T>C missense p.Leu310Pro X91° unpubl. 1(1) *
c.931delC deletion p.Gln311ArgfsX2 X91? unpubl. 1(1) *
c.935T>G missense p.Met312Arg X91? A0253 [1,11] unpubl. 2(2)
c.935T>A missense p.Met312Lys X91? A0629 [33] 1(1) *
c.943_945delAAG deletion p.Lys315del X91 A0163 A0208
A0209
[1, 11, 12, 43,
48, 79] unpubl.
3(4)
c.948delG deletion p.Phe317SerfsX26 X91° A0222 [1,19] 1(1)
c.958delG deletion p.Glu320LysfsX23 X91? unpubl. 1(1) *
c.[958delG;962T>G] deletion/
missense
p.Glu320LysfsX23 X91° unpubl. 1(1) *
c.958G>T nonsense p.Glu320X X91° A0569 [35] 1(1) *
c.960delA deletion p.Val321TrpfsX22 X91° A0306 [1] 1(1)
c.965delG deletion p.Gly322AspfsX21 X91° A0118 [1,12,52] 1(1)
c.965G>A missense p.Gly322Glu X91 A0377 [1,12] unpubl. 2(2)
c.967C>T nonsense p.Gln323X X91° A0067 [1, 17, 19] 1(1)
c.972C>A nonsense p.Tyr324X X91° unpubl. 1(1) *
c.973A>T missense p.Ile325Phe X91 A0401 [1,12] 1(1)
c.979delG deletion p.Val327SerfsX16 X91° A0584 [27] 1(1) *
c.981 985delCAAGT deletion p.Lys328ProfsX18 X91° unpubl. 1(1) *
c.985T>C missense p.Cys329Arg X91° [42] 1(1) *
c.992_997
delAGGTGTinsGGGGG
deletion/
insertion
p.Lys331ArgfsX12 X91° unpubl. 1(1) *
c.994delG deletion p.Val332CysfsX11 X91° A0571 [35] 1(1) *
c.997T>C missense p.Ser333Pro X91? A0200 [1,12,52]
unpubl.
2(2)
c.1006G>T nonsense p.Glu336X X91° A0087 A088
A0291
[1, 20, 52] 4(5)
c.1010G>A nonsense p.Trp337X X91° A0292 A0535 [1,11] unpubl. 3(3)
c.1011G>A nonsense p.Trp337X X91?
1 hetb
[53] unpubl. 3(3) *
c.1012C>T missense p.His338Tyr X91 A0014 A0084
A0254 A0397
A0398
[1, 11, 26, 49,
80, 85] unpubl.
7(7)
c.1012C>A missense p.His338Asn X91? A0396 [1] 1(1)
c.1013A>G missense p.His338Arg X91+ unpubl. 2(4) *
c.1014C>A missense p.His338Gln X91? unpubl. 3(3) *
c.1016C>A missense p.Pro339His X91+/− A0070 A0096
A0416 A0417
[1, 11, 12, 17,
19, 22, 26, 29,
44, 86] unpubl.
11(13)
c.1016C>T missense p.Pro339Leu X91? unpubl. 1(1) *
c.1016delC deletion p.Pro339LeufsX4 X91? A0317 [1] 1(1)
c.1016dupC insertion p.Thr341TyrfsX7 X91° A0347 [1, 22,87] 1(2)
c.1022C>A missense p.Thr341Lys X91+ A0255 [1,19,88] 1(1)
c.1022C>T missense p.Thr341Ile X91 A0470 [1] 1(1)
c.1025T>A missense p.Leu342Gln X91° A0064 A0256
A0404
[1, 11, 33, 55]
unpubl.
4(4)
c.1027A>C missense p.Thr343Pro X91° A0591 [27] unpubl. 2(2) *
c.1030T>C missense p.Ser344Pro X91° unpubl. 2(2) *
c.1030 1031insCT insertion p.Ala345ProfsX42 X91° unpubl. 1(2) *
c.1031C>T missense p.Ser344Phe X91° A0467 A0468 [1,17,44]
unpubl.
3(4)
c.1032delC deletion p.Ala345ProfsX41 X91° A0324 A0325 [1] 2(2)
c.1038delT deletion p.Glu347ArgfsX39 X91° A0129 A130
A0161 A0318
[1, 12, 19, 54]
unpubl.
5(6)
c.1046delA deletion p.Asp349AlafsX37 X91? unpubl. 1(1) *
c.1061A>C missense p.His354Pro X91° unpubl. 2(2) *
c.1061A>G missense p.His354Arg X91 A0399 unpubl. 1(2) *
c.1062_1071del10 deletion p.His354GlnfsX29 X91° A0207 [1,11] 1(1)
c.1063delA deletion p.Ile355SerfsX31 X91° [23] 1(1) *
c.
1063_1070delATCCGCA
T
deletion p.Ile355ArgfsX15 X91? unpubl. 1(1) *
c.1067G>C missense p.Arg356Pro X91? A0454 [12] 1(1) *
c.1075G>A missense p.Gly359Arg X91° A0056 A0378 [1,11,23]
unpubl.
3(4)
c.1076G>T missense p.Gly359Val X91? A0379 [1] 1(1)
c.1076G>C missense p.Gly359Ala X91 A0611 [20] 1(1) *
c.1081T>C missense p.Trp361Arg X91° [22] unpubl. 3(3) *
c.1082G>A nonsense p.Trp361X X91? unpubl. 1(1) *
c.1083G>A nonsense p.Trp361X X91° A0484 1, 23,28 3(3)
c.1085C>T missense p.Thr362Ile X91° unpubl. 2(3) *
c.1085C>G missense p.Thr362Arg X91? unpubl. 1(1) *
c.1094T>C missense p.Leu365Pro X91° A0405 [1] unpubl. 2(2)
c.1094dupT insertion p. Phe366ValfsX7 X91° unpubl. 1(1) *
c.1095delG deletion p.Phe366SerfsX20 X91? unpubl. 1(1) *
c.1105T>C missense p.Cys369Arg X91+
het b
A0257 [1, 11,88] 1(1)
c.1120C>T nonsense p.Gln374X X91° unpubl. 2(2) *
c.1123G>T nonsense p.Glu375X X91° A0610 [20] unpubl. 3(3) *
c.1129C>T nonsense p.Gln377X X91° A0293 [1,11] 1(1)
c.1136dupC insertion p.Trp380ValfsX5 X91? unpubl. 1(1) *
c.1139G>A nonsense p.Trp380X X91° A0086 A0174 [1,12,52]
unpubl.
3(3)
c.1140G>A nonsense p.Trp380X X91° unpubl. 3(3) *
c.1144 1145insAGGT insertion p.Leu382GlnfsX4 het b unpubl. 1(1) *
c.1147_1150delCCTA deletion p.Pro383ArgfsX2 X91? A0315 [1] 1(1)
c.1150_1151+2delAAGT f splice site del exon 9?
p.Val300AspfsX4?
X91° A0156 [1, 23, 52, 53]
unpubl.
9(9)
c.1151+4A>T f splice site del exon 9?
p.Val300AspfsX4?
X91? unpubl. 1(1) *
c.1151+5G>A f splice site del exon 9?
p.Val300AspfsX4
X91° A0525 [1] unpubl. 2(2)
c.1152-11T>G f splice site del exon 10/ins10 into
exon 10>
pAla488PhefsX12
X91 [1,26] 1(2)
c.1152-2A>G f splice site del exon 10?
p.Ile385SerfsX63?
X91? A0580 [38] 1(1) *
c.1152-2A>T f splice site del exon 10?
p.Ile385SerfsX63?
X91° unpubl. 2(2) *
c.1152-1G>A f splice site alt splice site>1 nt del
p.Ile385X
X91° unpubl. 2(2) *
c.1154T>G missense p.Ile385Arg X91° unpubl. 1(1) *
c.1163delA deletion p.Asp388ValfsX17 X91? unpubl. 1(1) *
c.1165G>A missense p.Gly389Arg X91? unpubl. 1(1) *
c.1166G>A missense p.Gly389Glu X91° A0380 [1,17] unpubl. 2(2)
c.1166G>C missense p.Gly389Ala X91 A0004 [1,11,49,51] 1(1)
c.1166G>T missense p.Gly389Val X91? unpubl. 1(1) *
c.1166_1170del
insTGTTCAGC
deletion/
insertion
p.Gly389_Pro390del
insValPheSer
X91? unpubl. 1(1) *
c.1167delG deletion p.Phe391LeufsX14 X91? unpubl. 1(1) *
c.1169C>T missense p.Pro390Leu X91° A0258 A0259 [1,11] unpubl. 2(3)
c.1177delA deletion p.Thr393LeufsX12 X91? unpubl. 1(1) *
c.1180_1182delGCC/ins
ATGTGATGAACACAT
deletion/
insertion
p.Ala394MetX2 X91° A0072 A0073 [1, 89] 1(2)
c.1186 1195del10 deletion p.Glu396SerfsX6 X91? unpubl. 1(1) *
c.1190 1191delAT deletion p.Asp397GlyfsX5 X91° A0213 [1,11] 1(1)
c.1214T>G missense p.Met405Arg X91° A0142 [1,12,19] 1(1)
c.1222G>A missense p.Gly408Arg X91? A0157 A0158 [1,12,19] 2(3)
c.1222G>C missense p.Gly408Arg X91+ [90] 1(1) *
c.1223G>A missense p.Gly408Glu X91+
1 het b
A0013 A0016
A0190 A0191
[1, 11, 12, 19,
88]
3(4)
c.1234G>A missense p.Gly412Arg X91? unpubl. 1(1) *
c.1234G>C missense p.Gly412Arg X91+ unpubl. 1(2) *
c.1235G>A missense p.Gly412Glu X91? unpubl. 1(1) *
c.1234_1257dup24 insertion p.Gly412Ile419dup X91? [1] 1(1)
c.1237dupG insertion p.Val413GlyfsX18 X91°
1 het b
A0144 [1,12,19]
unpubl.
2(2)
c.1244C>A missense p.Pro415His X91+ A0048 A049
A0076 A077
A0107
[1, 11, 12, 91] 3(5)
c.1244C>G missense p.Pro415Arg X91? A0419 [1] 1(1)
c.1244C>T missense p.Pro415Leu X91+ A0112 [1, 3, 12, 19]
unpubl.
3(3)
c.1253C>A missense p.Ser418Tyr X91° unpubl. 1(1) *
c.1255dupA insertion p.Ile419AsnfsX12 X91? A0574 [38] 1(1) *
c.1259T>C missense p.Leu420Pro X91° A0406 [1, 17, 64] 1(1)
c.1264T>C missense p.Ser422Pro X91? A0202 [1,12,19] 1(1)
c.1265C>A e nonsense p.Ser422X X91? [23] 1(1) *
c.
1265_1273delTCAGTCTG
G
deletion p.Ser422_Trp424del X91 unpubl. 1(1) *
c.1271G>A nonsense p.Trp424X hetb unpubl. 1(1) *
c.1272delG deletion p.Trp424CysfsX11 X91° A0330 [1,12] 1(1)
c.1272G>A nonsense p.Trp424X X91° A0622 A0623 [53] unpubl. 4(4) *
c.1275C>G nonsense p.Tyr425X X91? A0496 [1] 1(1)
c.1281T>G nonsense p.Tyr427X X91? unpubl. 1(1) *
c.1284C>A nonsense p.Cys428X X91° A0598 unpubl. 1(1) *
c.[1287delT;1290delC] deletion p.Asn429LysfsX23 X91° A0617 [20] 1(1) *
c.1294delA deletion p.Thr432ProfsX3 X91° unpubl. 1(1) *
c.1309A>T nonsense p.Lys437X X91° A0403 [1,17] unpubl. 2(2)
c.1313delA f deletion
splice site?
p.Lys438ArgfsX64 X91° A0053 A0054 [1,11] unpubl. 2(3)
c.1313_1314delAGinsT f deletion/
insertion
splice site?
p.Lys438IlefsX64 X91° A0091 [1,12,19] 1(1)
c.1314delG f deletion
splice site?
p.Ile439SerfsX63 X91? unpubl. 2(2) *
c.1314+1G>A f splice site del exon 10?
p.Ile385SerfsX63?
X91?
1 het b
A0526 A0579 [1, 12, 38] 2(2)
c.1314+1G>T f splice site del exon 10
p.Ile385SerfsX63
X91? A0529 [1] 1(1)
c.1314+1G>C f splice site del exon 10
p.Ile385SerfsX63
X91° unpubl. 1(1) *
c.1314+2T>A f splice site del exon 10
p.Ile385SerfsX63
X91° A0527 [1] 1(1)
c.1314+2T>G f splice site del exon 10
p.Ile385SerfsX63
het b unpubl. 1(1) *
c.1314+4_+5AG>GC f splice site del exon 10
p.Ile385SerfsX63
X91 unpubl. 1(1) *
c.1315-2A>C f splice site del exon 11?
p.Ile439_Gln487del?
X91? unpubl. 2(2) *
c.1315-1G>C f splice site del exon 11
p.Ile439_Gln487del
X91° A0528 [1,12] 1(1)
c.1315-1G>T f splice site del. exon 11?
p.Ile439_Gln487del?
X91? unpubl. 1(1) *
c.1315delA f deletion
splice site?
p.Ile439SerfsX63 X91° A0081 [1, 19, 25] 1(1)
c.1320C>A nonsense p.Tyr440X X91? A0151 [1,12,52] 1(1)
c.1320C>G nonsense p.Tyr440X X91? unpubl. 1(1) *
c.1326C>G nonsense p.Tyr442X X91° A0589 [27] 1(1) *
c.1327delT deletion p.Trp443GlyfsX59 X91? A0630 [33] 1(1) *
c.1329G>A nonsense p.Trp443X X91° A0168 A0485 [1,12,52] 2(2)
c.1333T>C missense p.Cys445Arg X91? A0605 unpubl. 1(1) *
c.1335C>A nonsense p.Cys445X X91° A0361 [1] unpubl. 2(3)
c.1340delA deletion p.Asp447AlafsX55 X91° [23] 1(1) *
c.1348_1352delGCCTT deletion p.Ala450X X91? A0308 [1] 1(1)
c.1350delC deletion p.Phe451LeufsX51 X91? A0192 [1,12,19] 1(1)
c.1354G>T nonsense p.Glu452X X91° A0373 [1,17] 1(1)
c.1357T>C missense p.Trp453Arg X91° A0486 A0487
Kuhns unp
[1, 12, 23]
unpubl.
3(3)
c.1357T>A missense p.Trp453Arg X91° A0613 [20] 1(2) *
c.1357 1358delTG deletion p.Trp453ValfsX32 X91° unpubl. 1(1) *
c.1358G>A nonsense p.Trp453X X91° A0488 [1,12,19] 1(1)
c.1359G>A nonsense p.Trp453X X91° A0489 [1] unpubl. 2(3)
c.1363 1375del13 deletion p.Ala455AsnfsX43 X91° unpubl. 1(1) *
c.1375C>T nonsense p.Gln459X X91° Nunoi unp 1(1) *
c.1382delT deletion p.Leu461ArgfsX41 X91? unpubl. 1(1) *
c.1384G>T nonsense p.Glu462X i X91° A0374 [39, 72] 2(2) *
c.1396C>T nonsense p.Gln466X X91° A0426 [1,17] unpubl. 2(2)
c.1399G>T nonsense p.Glu467X X91 unpubl. 1(2) *
c.1407-1414del8/ins
TGTTGTA e
deletion/
insertion
p.Asn470ValfsX14 X91° [1] unpubl. 1(2)
c.1415delG deletion p.Gly472AlafsX30 X91° A0092 A0493 [1,12,19] 1(2)
c.1421T>G missense p.Leu474Arg X91 unpubl. 1(1) *
c.1428C>A nonsense p.Tyr476X X91° A0071 [1, 11, 17, 44,
86]
1(1)
c.1437C>A nonsense p.Tyr479X X91? A0631 [33] unpubl. 3(3) *
c.1441A>C missense p.Thr481Pro X91+ unpubl. 1(1) *
c.1447 1459del13 deletion p.Trp483ArgfsX15 X91° A0331 [1,17] 1(1)
c.1448G>A nonsense p.Trp483X X91° unpubl. 3(3) *
c.1449G>A nonsense p.Trp483X X91° A0294 [1,19] 1(1)
c.1455delG deletion p.Glu485AspfsX17 X91? A0165 [1,12,19] 1(1)
c.1456dupT insertion p.Ser486PhefsX11 X91° A0184 A0185 [1,12,19]
unpubl.
2(3)
c.1461+1G>A f splice site del exon 11?
p.Ile439_Gln487del?
X91? A0241 [1,19] unpubl. 2(2)
c.1461+1G>T f splice site del exon 11
p.Ile439_Gln487del
X91° A0530 A0560 [1, 24] unpubl. 3(4)
c.1461+2delT f splice site del exon 11?
p.Ile439_Gln487del?
X91? [29] 1(1) *
c.
1461+668_1462-807del15
58
deletion intronic deletion; no
phenotype
het b,g [68] 1(1) *
c.1462-809_1586+819
del1753ins12
deletion/
insertion
del exon 12
p.Ala488TyrfsX11
X91° [1, 68] 1(1)
c.1462-2A>G f splice site partial del exon 12
p.Ala488_Glu497del
X91+ A0078 A0104
A0531
[1, 92] unpubl. 3(4)
c.1462-2A>C f splice site (partial) del exon 12?
p.Ala488_Glu497del?
X91+ unpubl. 1(1) *
c.1462-1G>A f splice site altern. splicing exon 12
G del exon 12 >
p.Ala488ProfsX14
X91° A0532 [1] 1(1)
c.1462-? f splice site del exon 12
p.Ala488TyrfsX11
X91° [1,17] 1(1)
c.1464delC deletion p.Asn489IlefsX13 X91° A0114 [1,12,19] 1(1)
c.1484A>C missense p.His495Pro X91 unpubl. 1(2) *
c.1488_1490delTGA deletion p.Asp496del X91+ unpubl. 1(1) *
c.1497delA deletion p.Asp500MetfsX2 X91° A0312 [1,17] 1(1)
c.1498G>A missense p.Asp500Asn X91 A0366 unpubl. 1(3) *
c.1498G>C missense p.Asp500His X91? A0632 [23,33] 2(2) *
c.1498G>T missense p.Asp500Tyr X91+ A0367 [23, 56] 2(3) *
c.1499A>G missense p.Asp500Gly X91+ A0019 [1, 93] 1(1)
c.1500T>G missense p.Asp500Glu X91+ [23] 1(1) *
c.1509delA deletion p.Gly504AlafsX2 X91° [23] unpubl. 2(2) *
c.1514T>G missense p.Leu505Arg X91+ A0408 A0573 [35, 39] unpubl. 3(3) *
c.1514T>C missense p.Leu505Pro X91 A0407 [1] 1(2)
c.1515 1525del11 deletion p.Lys506PhefsX9 X91? unpubl. 1(1) *
c.1519C>T nonsense p.Gln507X X91° A0116 [1,12,52] 2(5)
c.
1521_1525delAAAGA /ins
deletion/
insertion
p.Gln507_Thr509del /i
nsHisIleTrpAla
X91+ A0068 [1, 94] 1(1)
CATCTGGG
c.1522_1523delAA deletion p.Lys508AspfsX10 X91? A0313 [1] 1(1)
c.1523delA deletion p.Lys508ArgfsX25 X91° A0314 [1,23,] 2(3)
c.1524 1527delGACT deletion p.Lys508AsnfsX24 X91? unpubl. 1(1) *
c.1528_1529delTT deletion p.Leu510ValfsX8 X91° A0143 [1,19] unpubl. 3(3)
c.
1532_1538delATGGACGi
nsTTCA
deletion/
insertion
p.Tyr511_Arg513del/
insPheGln
X91? A0645 [95] 1(1) *
c.1533T>A nonsense p.Tyr511X X91° [23] 1(1) *
c.1546T>A missense p.Trp516Arg X91? [23] 1(1) *
c.1546T>C missense p.Trp516Arg X91° A0494 [1, 64] 1(1)
c.1547G>A nonsense p.Trp516X X91° A0570 [35] unpubl. 3(3) *
c.1548G>T missense p.Trp516Cys X91? A0094 [1,12,19] 1(1)
c.1548G>A nonsense p.Trp516X X91° A0295 A0296 [1,19] unpubl. 3(3)
c.1549delG deletion p.Asp517IlefsX16 X91° unpubl. 1(1) *
c.1555G>T nonsense p.Glu519X X91° A0059 [1,33,55] 1(1)
c.1561A>T nonsense p.Lys521X X91° A0025 [1,11] 1(1)
c.1565delC deletion p.Thr522LysfsX11 X91° A0326 [1, 12, 34] 1(1)
c.1570 1586+?del deletion p.Ala524X X91° unpubl. 1(1) *
c.1571C>T missense p.Ala524Val X91° [96] unpubl. 2(2) *
c.1578delA deletion p.Gln526HisfsX7 X91° A0319 [56] 1(1) *
c.1579dupC insertion p.His527ProfsX3 X91° [23] 1(1) *
c.1585_1586+9del11 f splice site del 17 from 3’ exon 12
p.Ala524TyrfsX11
X91 A0572 [35] 1(1) *
c.1586+1G>C f splice site del exon 12?
p.Ala488TyrfsX11?
X91? unpubl. 1(1) *
c.1586+3A>T f splice site del exon 12?
p.Ala488TyrfsX11?
X91? unpubl. 1(1) *
c.1587-2A>G f splice site altern splicing
G insert exon 13 >
p.Asn529LysfsX12
X91° A0533 [1, 17, 61]
unpubl.
3(4)
c.1598 1600delGAG deletion p.Gly533del X91 [28] unpubl. 2(2) *
c.1600 1614del15 deletion p.Val534_Gly538del X91 A0329 [1] 1(1)
c.1601T>A missense p.Val534Asp X91? A0147 [1,12,19] 1(1)
c.1603_1609delTTCCTCT deletion p.Phe535ValfsX10 X91° unpubl. 1(1) *
c.1607dupT insertion p.Cys537LeufsX4 X91? A0345 [1] 1(1)
c.1609T>C missense p.Cys537Arg X91+ A0199 A0545 [1, 12, 19, 41]
unpubl.
2(2)
c.1611_1612delTG deletion p.Cys537TrpfsX3 X91° [23] 1(1) *
c.1618delG deletion p.Glu540LysfsX7 X91° A0537 [97] unpubl. 2(3) *
c.1622 1625dupCCTT insertion p.Leu542PhefsX4 X91° A0183 [1,12,19] 1(1)
c.1625T>C missense p.Leu542Ser X91° A0082 [1,19,26] 1(1)
c.1637T>C missense p.Leu546Pro X91+ A0409 [1,26] 1(1)
c.1637T>G missense p.Leu546Arg X91 unpubl. 1(1) *
c.1642A>T nonsense p.Lys548X X91? unpubl. 1(1) *
c.1645C>T nonsense p.Gln549X X91? A0297 [1,19] 1(1)
c.1658delA deletion p.Ser554LeufsX24 X91? unpubl. 1(1) *
c.1661_1662delCT deletion p.Ser554X X91? [29] 1(1) *
c.1662dupT insertion p.Glu555X X91° A0302 A0348
A0556
[1, 19, 24]
unpubl.
3 (5)
c.1662 1663insGT insertion p.Glu555ValfsX23 X91? unpubl. 1(1) *
c.1663 1693dup31 insertion p.Phe565X X91? A0300 [1, 39, 79] 2(2)
c.1678G>T nonsense p.Gly560X X91? unpubl. 1(1) *
c.1679delG deletion p.Gly560GlufsX17 X91° A0307 [77, 80, 98] 3(3) *
c.1682-1712del31 deletion p.Val561AspfsX6 X91° A0155 [1,12,19]
unpubl.
2(2)
c.1694dupT insertion p.Asn566GlnfsX28 X91 unpubl. 1(1) *
c.1702G>A missense p.Glu568Lys X91+ A0259 [1,19,88] 1(1)

Acc. #, accession number in the X-CGD database (see text);

*

mutation added since last tabulation; unpubl., not previously published; ND, not determined; NA, not applicable; del, deletion; ins, insertion; dup, duplication; bp, base pairs; AA, amino acids; w.t., wild type.

a

Number of unrelated kindreds and (number of patients).

b

Female heteterozygote patient or female heterozygote relative of a deceased patient.

c

Due to insertion of a LINE-1 element [60,70].

d

These promoter mutations lead to loss of gp91-phox expression on neutrophils and monocytes, but normal expression on eosinophils [1416,18].

e

Corrected after consultation of the author.

f

Position of introns in CYBB: intron 1 c.45_46; intron 2 c.141_142; intron 3 c.252_253; intron 4 c. 337_338; intron 5 c.483_484; intron 6 c.674_675; intron 7 c.804_805; intron 8 c.897_898; intron 9 c. 1151_1152; intron 10 c.1314_1315; intron 11 c.1461_1462; intron 12 c.1586_1587.

g

This woman is a triple mosaic carrier of two different mutations and the wild-type of CYBB (68).

h

Due to unequal crossing over between a GT repetition at the 3’region of intron 5 and a GT repetition at the 5’region of intron 8 (Van Leeuwen, Stasia, et al., unpublished).

i

Two patients with c.388C>T (Kuhns et al., unpubl.), one patient with c.667G>T and one patient with c. 1384G>T [72] have somatic mosaicisms of cells with the mutated CYBB sequence and a small proportion of reverse mutated cells with the wild-type CYBB sequence.

j

This patient has a TMF1 retrogene insertion in CYBB intron 1, resulting in an extra exon between exon 1 and 2 in the CYBB mRNA. This extra exon contains TAG as the second codon (De Boer et al., unpublished).

Table 2.

Large (≥ 1 exon) deletions in the CYBB region known to cause X-linked CGD

Approximate size of deletion
(associated disease)
Affected
exon(s)
CGD
Type
Acc. # Ref Kin
(pat)
∼6000 kb (+DMD, McLeod) NA X91° unpubl. 1(1)*
∼5650 kb (+DMD, RP, McLeod) NA X91° [99] 1(1)*
∼5,000 kb (+DMD, RP, McLeod) NA X91° A0030 [1, 100] 1(1)
∼4,000 kb (+ DMD, McLeod) NA X91° A0031 [1,101] 1(1)
∼3900 kb (+OTC, RP, McLeod) NA X91? [102] 1(1)*
∼3500 kb (+ OTC, McLeod) NA X91° unpubl. 1(1)*
913kb del promoter_
exon 1
X91° [1,12] 1(1)
∼800 kb (+ McLeod) NA X91° A0032 [1, 103] 1(1)
∼800 kb (+McLeod) NA X91° unpubl. 1(1)*
∼550 kb (+McLeod) NA X91° [20] 1(1)*
∼500 kb (+RP, McLeod) NA X91° [1, 104] 1(1)
∼500 kb (+RP, McLeod) NA X91° A0066 [1,17] 1(1)
∼500 kb NA X91° [20] 1(1)*
ND (+ RP, McLeod) NA X91° A0033 [1, 105] 1(1)
∼450 kb (+McLeod) NA X91° unpubl. 3(4)a*
ND (+McLeod) NA X91° unpubl. 1(1)*
ND (+McLeod) NA X91° [29] 1(1)*
ND (+McLeod) NA X91° [29] 1(1)*
ND (+McLeod) del exons 1_13 X91? [106] 1(1)*
ND (+McLeod) del exons 1_13 X91? [106] 1(1)*
ND (+McLeod) del exons 1_13 X91? [106] 1(1)*
ND (+McLeod) del exons 1_13 X91? [106] 1(1)*
∼320 kb (+ DMD, McLeod) NA X91° [1,12] 1(1)
∼320 kb (+McLeod) NA X91° unpubl. 1(1)*
>300 kb (+McLeod) del exons 1_13 X91° unpubl. 1(1)*
>300 kb (+McLeod) del exons 1_13 X91° unpubl. 1(1)*
>150 kb (+McLeod) del exons 1_13 X91° unpubl. 1(1)*
>150 kb (+McLeod) del exons 1_13 X91° unpubl. 1(1)*
>100 kb (+McLeod) del exons 1_3 X91° unpubl. 1(1)*
>100 kb (+McLeod) del exons 1_13 X91° [107] 1(3)*
∼100 kb del exons 1_13 X91° unpubl. 1(1)*
∼80 kb del exons 1_13 X91° unpubl. 1(2)*
> 60 kb (+McLeod) del exons 1_3 X91? [20] 1(2)*
>>30 kb (+ DMD + McLeod) NA X91° A0119 [1,12] 1(1)
>27 kb (+McLeod) del. exons 1_13 X91o A0035 [1, 11, 19] 1(1)
>27 kb del exons 1_13 a X91° A0034 A0036
A0037 A0038 b
A0119 A0153
A0167 A0169
A0201
[1, 11, 12 ,
20, 23, 29,
54] unpubl.
30 a
(32)
25 kb del promoter_
exon 7
X91° [1, 17, 108,
109]
1(1)
>20 kb del exons 1_10 X91° A0039 b [1,11] 1(1)
>20 kb del exons 1_10 X91° unpubl. 1(1)*
ND del promoter_
exon 4
X91° unpubl. 1(1)*
∼19 kb del exons 6_13 X91° [1] 1(3)
>15 kb del exons 4_13 X91° A0040 [1,19] 1(1)
∼14 kb del exons 4_9 X91° A0026 [1, 34] 1(1)
>13 kb del exons 6_13 X91° A0041 [1, 110] 1(2)
>13 kb del exons 6_13 X91° unpubl. 1(1)*
ND del exons 7_13 X91? unpubl. 1(1)*
>10 kb del exons 8_13 X91° A0042 [1,11] 1(1)
>10 kb del exons 8_13 X91° [1] 1(1)
∼10 kb del exons 7_12 X91°
(het b)
unpubl. 1(1)*
∼10kb del exons 7_11 X91° [1] 1(1)
>9 kb del exons 9_13 X91° [1] 1(1)
ND del exons 6_8 X91° [29] 1(1)*
ND del. exons 4_6 X91? unpubl. 1(1)*
7 kb del exons 3_4 X91° [1,17] 1(1)
>6.5 kb del exons 11_13 X91° A0043 [1,11] 1(1)
∼6 kb del exons 12_13 X91° A0044 [1, 67] 1(1)
>5.3 kb del exons 1_3 X91° A0204 [1,19] 1(1)
ND del exons 1_3 X91° [56] 1(2)*
∼4.3 kb del exons 11_13 X91° A0172 A0173 [1, 52] 1(2)
ND del. exons 11–13 X91? unpubl. 1(1)*
ND del exons 7_8 X91° unpubl. 1(1)*
∼3.5 kb del exons 6_7 X91° A0028 c [1,34,111] 1(1)
∼3.2kb del exon 6 X91° [1] 1(1)
∼3.2 kb del exon 7 X91? A0205 [1,11] 1(1)
∼3 kb del exon 5 X91° A0027 c [1,34,111] 1(1)
∼3 kb del exon 7 X91? unpubl. 1(2)*
∼2.2 kb del exon 5 X91° A0206 [1,19] 1(1)
∼2 kb del exon 3 X91° [1] 1(1)
∼2 kb del exon 7 X91° [23] 1(1)*
ND del exon 3 X91? unpubl. 1(1)*
∼2 kb del promoter_
exon 1
X91° [1] 1(1)
ND del promoter_
exon 1
X91? [23] 1(1)*
∼2 kb del exon 8 X91° [1] unpubl. 2(2)a
2 kb del exons 12_13 X91° [1,17] 1(1)
∼2 kb del. exon 7 X91° [23] 1(1)*
ND del. exon 7 X91? unpubl. 1(1)*
∼1.1 kb del exon 6 X91? [23] 1(2)*
∼1 kb del intron 12_
3’UTR
X91° A0203 [1,101]
unpubl.
1(1)
ND del exon 9 X91? unpubl. 1(1)*
ND del. exon 9 X91? unpubl. 1(1)*
0.35 kb del exon 3 X91° [1] 1(2)
0.22 kb del promoter X91° [1] 1(1)
a

These mutations are not necessarily identical.

b

Patients A0038 and A0039 are brothers with different deletions.

c

Patients A0027 and A0028 are brothers with different deletions; their mother has both mutations and the wild-type CYBB sequence (triple mosaic) [34,111].

DMD, Duchenne muscular dystrophy; RP, X-linked retinitis pigmentosa; OTC, ornithine transcarbamylase deficiency; McLeod, McLeod hemolytic anemia; 3’UTR, 3’ untranslated region.

Table 3.

Known polymorphisms in the CYBB gene

Nucleotide change Effect Approximate frequency
c.-270C/A N.A. unknown [112]
c.141+48C/G N.A. unknown (Maddalena, unpubl.)
c.142–12C/T N.A. unknown (internet, unpubl.)
c.484-60delT N.A. unknown (Jianxin He, unpubl.)
c.484-4G/A splice unknown [1]
c.654C/A silent (p.Gly218) 2% A in sub-Sahara Africans
(internet, unpubl.)
c.804+118A/G N.A. unknown (Maddalena, unpubl.)
c.1002G/A silent (p.Lys334) 4% A in sub-Sahara Africans
(internet, unpubl.) [1]
c.1090G/C p.364Gly/Arg unknown [1,113]
c.1414G/A p.472Gly/Ser 2% A in Asians (internet, unpubl.)
c.1551T/A p.517Asp/Glu unknown (Hill, unpubl.) [1]
c.1581C/T silent (p.His527) unknown (Di Matteo, unpubl.)

Table 4.

Total number of kindreds with X-CGD patients, total number of X-CGD patients, total number of different mutations and total number of mutations unique for one kindred

Kindreds Mutations
Deletions 281 (22.2%) 242 (35.6%)
Insertions 89 (7.0%) 54 (7.9%)
Deletion/insertions 19 (1.5%) 19 (2.8%)
Splice site mutations 247 (19.5%) 120 (17.6%) (2 undefined)
Missense mutations 246 (19.4%) 145 (21.3%)
Nonsense mutations 377 (29.8%) 96 (14.1%)
Promoter mutations 8 (0.6%) 5 (0.7%)

Total 1267 unrelated kindreds with 1415 patients Total 681 different mutations in
the patients (all large deletions
considered different). Of these 681
mutations, 498 (73.1%) are unique
for one kindred.

We have used the standard notation for differentiating the various phenotypes of X-linked CGD, X91°, X91, and X91+, where the superscript denotes whether the level of gp91-phox protein is undetectable (°), diminished () or normal (+), as determined by immunoblot analysis and/or spectral analysis. The designation X91? indicates that the level of gp91-phox protein expression has not been determined. The respective proteins can be non-functional, exert residual activity, or in case of () be fully functional. The nucleotide numbering system we have used is based on the cDNA sequence and follows the convention that +1 is the A of the ATG initiator codon. This differs from the numbering of the GenBank sequence, which starts at A-12 (subtract 12 from GenBank sequence number to make the initiator A +1). Moreover, GenBank incorrectly denotes Met65 as the start codon of protein translation. The notation of the mutations follows the recommendations of the Human Genome Variation Society (8) (see also www.hgvs.org/mutnomen). The consequences of the mutations for protein composition have been checked with the Mutalyzer program (www.lovd.nl/mutalyzer) (9).

Acknowledgements

We thank the CGD Research Trust, London, UK, for financial support. LM thanks B. Tóth (Debrecen) for helpful contribution to this work. ACN thanks Edgar Borges de Oliveira Jr, PhD, for excellent work, and Fundação de Amparo a Pesquisa do Estado de São Paulo for financial support (FAPESP, Grant 2005/59568). This work was supported in part by the Slovenian Research Agency (Grant L3-0624). CK thanks Prof. M.A. Gougerot-Pocidalo for performing Western blot analysis of NADPH oxidase subunits and measurement of respiratory burst in patients’ polymorphonuclear neutrophils. DR thanks Dr. Paul Heyworth for providing information on unpublished mutations.

This project has been funded in part with federal funds from the National Cancer Institute, National Institutes of Health, under Contract No. HHSN261200800001E. The content of this publication does not necessarily reflect the views or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organizations imply endorsement by the U.S. Government.

Footnotes

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