Abstract
Filamentous hyphae of the human pathogen, Candida albicans, invade mucosal layers and medical silicones. In vitro, hyphal tips reorient thigmotropically on contact with small obstacles. It is not known how surface topography is sensed but hyphae lacking the cortical marker, Rsr1/Bud1, are unresponsive. We show that, on surfaces, the morphology of hyphal tips and the position of internal polarity protein complexes are asymmetrically skewed towards the substratum and biased towards the softer of two surfaces. In nano-fabricated chambers, the Spitzenkörper (Spk) responded to touch by translocating across the apex towards the point of contact, where its stable maintenance correlated with contour-following growth. In the rsr1Δ mutant, the position of the Spk meandered and these responses were attenuated. Perpendicular collision caused lateral Spk oscillation within the tip until after establishment of a new growth axis, suggesting Spk position does not predict the direction of growth in C. albicans. Acute tip reorientation occurred only in cells where forward growth was countered by hyphal friction sufficient to generate a tip force of ∼ 8.7 μN (1.2 MPa), more than that required to penetrate host cell membranes. These findings suggest mechanisms through which the organization of hyphal tip growth in C. albicans facilitates the probing, penetration and invasion of host tissue.
Introduction
Pathogenic fungi have developed growth and exploration strategies relevant to their host environment. Once adhered to the host, most fungi produce invasive filaments which, like Uromyces appendiculatus, navigate host surfaces by mechanosensing in order to identify suitable entry points. Some respond to the specific topography of leaf stomata, on which they form a specialized structure called an appressorium. Through strong adhesion to the host leaf, the enormous internal turgor pressure generated by appressoria is transmitted as force against the host leaf in the form of a penetration peg (Allen et al., 1991; Howard et al., 1991; Hoch et al., 1993). These contact-dependent (thigmotropic) growth behaviours can be induced by growing fungi on inert substrates that mimic host topography. In vitro systems can therefore be useful in identifying growth behaviours that are relevant to the host infection process. The identification of fungal growth traits that facilitate invasion in humans is hampered by the highly heterogeneous nature of the various body sites from which fungi can be isolated. Candida albicans normally lives as a commensal yeast on mucosal surfaces, but suboptimal containment of the fungus by the host immune system induces morphogenesis and the production of hyphae (Odds, 1988). Hyphal filaments invade and disrupt the outer epithelial cell layers (e.g. in oral or vaginal ‘thrush’) or facilitate escape from the vasculature into solid organ tissue during hospital-acquired bloodstream infections. They do this by active penetration of host tissue or by germinating within host cells that have internalized the yeast form of the fungus (Dalle et al., 2010; Wächtler et al., 2011). Both invasion mechanisms involve breaching of the host cell membrane, but the importance of physical force in this process is not known. However, the ability of hyphae to regulate their direction of growth is important for tissue penetration because deletion of Rsr1, a cortical landmark protein that positions the activity of cell polarity complexes, attenuates virulence and cell damage (Yaar et al., 1997; Brand et al., 2008).
The polarity complexes are well conserved in filamentous fungal cells and consist of the Spitzenkörper (Spk), the polarisome and the exocyst. The Spk, or ‘apical body’, was first observed by light microscopy as a dynamic dark zone just behind the hyphal tip (Girbardt, 1957). Electron and fluorescence microscopy using the lipid stain, FM4-64, showed it to comprise a compact cloud of secretory vesicles (Grove and Bracker, 1970; Howard, 1981; Fischer-Parton et al., 2000) and in C. albicans it has been visualized through the localization of fluorescently tagged Myosin light chain 1 (Mlc1) and Bni1, a motor protein and an actin nucleator, respectively (Crampin et al., 2005; Li et al., 2005). The Spk functions in conjunction with the polarisome, a collection of proteins that appears as a crescent at the apical plasma membrane (Crampin et al., 2005; Jones and Sudbery, 2010). The polarisome contains the Spa2 cell-end anchoring protein, Cdc42, a small GTPase that activates actin-mediated polarized vesicle delivery, Exo70, a membrane-associated component of the exocyst that determines secretory vesicle docking sites, and Kel1, a putative cell-end marker homologous to TeaA in filamentous fungi (Fujiwara et al., 1998; Zheng et al., 2003; Takeshita et al., 2008; Jones and Sudbery, 2010; Gutiérrez-Escribano et al., 2011). In models of hyphal growth, the Spk has been termed the Vesicle Supply Centre and placed symmetrically within the hyphal apex, from whence vesicle diffusion determines the hyphoid curve of the cell apex (Bartnicki-Garcia et al., 1989; Gierz and Bartnicki-Garcia, 2001; Li et al., 2005). This positioning is likely true for cells growing within a homogenous environment, such as in liquid media or during embedded growth in agar, but an asymmetrical, or ‘nose-down’, tip morphology has been observed in several fungi during growth on surfaces (Read et al., 1992; Bowen et al., 2007). The positioning of the Spk close to the substratum has also been recorded (Kwon and Hoch, 1991; Dijksterhuis, 2003) and a role for the Spk in touch responses was proposed when it was observed to move away from the point of contact in the rust fungus, U. vignae (Dijksterhuis, 2003). Spk regulation and behaviour may therefore be closely linked to directional growth responses and it has been proposed that the position of the Spk predicts the site of new tip growth (Bracker et al., 1997; Riquelme et al., 1998).
Previous in vitro studies, in which hyphae were free to grow in the X, Y and Z dimensions, showed that C. albicans hyphae exhibit thigmotropic tip reorientation in response to small topographical ridges less than half the height of a hypha (Watts et al., 1998; Brand et al., 2007). How do fungal cells, which are surrounded by a stiff cell wall, sense such small features? Deletion of the Rsr1 polarity-site marker abolished all tip reorientation responses (Brand et al., 2008), but its role in this process has not been further elucidated. Here we used live cell imaging and nano-fabricated chambers to observe how hyphal tips interact with obstacles in space and time and conclude that the cellular organization of hyphal growth in C. albicans imparts specific characteristics important for the exploration, penetration and invasion of its host environment.
Results
C. albicans hyphae grow with an asymmetrical morphology and a bias towards softer surfaces
To visualize hyphal tip morphology and growth behaviour in real time, we grew cells in nano-fabricated live cell imaging chambers featuring curved and angled shapes, gaps and channels with which to test fungal responses (Fig. S1). In this system, changes in hyphal growth direction were confined to the two-dimensional horizontal plane. When extending hyphal tips made contact with an obstacle, hyphae reoriented their growth axis along the contour of the barrier, which permitted direct observation of the hypha-substrate interface in the horizontal plane (Fig. 1A; Movie S1). DIC microscopy showed that C. albicans hyphal tips adopted an asymmetric morphology towards the barrier after reorienting. Strains carrying fluorescently-tagged proteins were used to visualize the relative positioning of the key intracellular polarity complexes within the skewed tip. Mlc1-YFP and the actin–cable-nucleating formin, Bni1-GFP, were used as markers for the Spk. Spa2-YFP represented the polarisome, and the exocyst was represented by Exo70-YFP (Crampin et al., 2005; Li et al., 2005; Takeshita et al., 2008). Kel1, a homolog of the Aspergillus nidulans microtubule-associated cell-end marker, TeaA, was also visualized in addition to actin cables, which associate with the LifeAct-GFP construct (Gutiérrez-Escribano et al., 2011; Sudbery, 2011). The intracellular positioning of the polarity complexes, while retaining their longitudinal positions relative to each other, was asymmetrically skewed towards the barrier, consistent with the overall tip morphology (Fig. 1A). Actin cables were visible sub-apically but not within the hyphal tip. To establish whether the position of polarity proteins was asymmetrically skewed in the vertical (Z) plane during growth on a surface, hyphae were germinated on glass or silicone and incubated in a Petri dish instead of within the confines of live cell imaging chambers. Z-stack microscopy and three-dimensional image-rendering software were used to score the position of the Spk as being ‘top’, ‘mid’ or ‘substratum’ (i.e. adjacent to the solid base) (Fig. 1B). On both surfaces, the Spk was oriented towards the substratum (59%, P < 0.03). The ‘nose-down’ tip shape and Spk position are therefore general features of C. albicans hyphal growth on surfaces.
To examine the role of physical properties of the substratum in the skewing of polarity proteins, hyphae carrying fluorescently tagged protein complexes were grown between silanized glass and silicone elastomer, with the silicone uppermost on an inverted microscope (Fig. 1C). Both materials had similarly hydrophobic surface chemistries, with a water contact angle of 92 ± 5° and 106 ± 3°, respectively, but glass is a much stiffer material, with a Young's modulus several orders of magnitude higher than silicone (Armani et al., 1999; Seal et al., 2001). The polarity complex proteins were centrally localized (48%) or skewed towards the silicone (45%), while only 7% oriented towards the glass, suggesting that hyphal tips are sensitive to the mechanical properties of the substratum.
Asymmetrical hyphal tips follow contours and grow into gaps
To examine the dynamics of Spk responses, imaging chambers were used to track the position of Mlc1-YFP during hyphal growth through channels that induced sequential tip reorientation. On encountering an obstacle, the Spk translocated towards the site of contact (Fig. 2A; Movie S2). On encountering a second obstacle, the Spk translocated across the hyphal apex towards the new point of contact. A plot of Spk position at 1 min intervals (Fig. 2B) showed that the Spk consistently maintained its position during growth along a contour and was not perturbed by the formation of a presumptum, a nascent septin ring that is laid down at the cell periphery to later become a sealed septum after nuclear division across the site (Fig. 2C) (Finley and Berman, 2005). Hyphal growth followed curved contours, and even sharp bends, in a direction consistent with Spk bias (Fig. 2A and D). In contrast, hyphae that germinated adjacent to a barrier grew with symmetrical tip morphology in the X-Y plane, had a central Spk and maintained a straight growth trajectory (Fig. 2E). Spk positioning was therefore dependent on direct tip contact and its asymmetry correlated with the direction of growth in response to topographical features.
Deletion of Rsr1 attenuates contact-dependent hyphal behaviours
Rsr1 is a regulator of directional growth in yeast, and its deletion in C. albicans causes erratic movement of the Spk in hyphae (Yaar et al., 1997; Hausauer et al., 2005). To explore the role of Rsr1 in contact-dependent growth responses, the rsr1Δ strain carrying Mlc1-YFP was imaged during hyphal growth in live cell imaging chambers. In contrast to wild-type cells, after contact-dependent tip reorientation rsr1Δ hyphal tips did not sustain an asymmetrical morphology and became rounded (Fig. 3A). Time lapse plots of Spk localization showed greater variation in Spk trajectory compared with wild-type cells (Fig. 3B). rsr1Δ hyphae did not consistently follow topographical contours and instead grew away from barriers in a random manner, which was never seen in wild-type cells (Fig. 3C). The hyphae of the rsr1Δ mutant were therefore less likely to grow around obstacles and into gaps (Fig. 3D).
After circumnavigating an obstacle, wild-type hyphae reverted to their original growth trajectory as soon as possible (Fig. 4A; Movie S3). This response was quantified by measuring the change between the angle of approach (towards the obstacle) and the angle of exit (away from the obstacle) in individual hyphae (Fig. 4B and C). In wild-type cells, large net alterations in the overall growth trajectory were infrequent and most hyphae altered course by less than 20° (Fig. 4D; P = 0.007). In contrast, hyphae of the rsr1Δ mutant were attenuated in their ability to maintain an overall growth trajectory and instead made pronounced and random directional changes (Fig. 4E and F). Taken together, these results suggest that deletion of Rsr1 uncouples polarity positioning determinants from external directional growth cues.
Perpendicular contact causes Spk oscillation and generates tip force
On tangential hyphal tip contact, the Spk smoothly translocated across the hyphal apex but perpendicular tip collisions (i.e. with an angle of approach of 90 ± < 5°) caused lateral oscillations of the Spk and delayed hyphal reorientation (Fig. 5A–C; Movie S4). The emergence of new tip growth along the barrier occurred while the Spk was still oscillating, suggesting that Spk position is not an absolute predictor of the direction of growth (see below). Prior to reorientation, the force exerted by the hyphal tip caused indentation of the polydimethylsiloxane (PDMS) elastomer, permitting the force exerted by its hyphal tips to be quantified for the first time. A standard curve of force versus indentation distance was generated using atomic force microscopy to plot the force required to indent PDMS to increasing depths using a cantilevered 2 μm diameter glass bead to mimic the hyphal tip (Fig. 5D; Fig. S2). The depths of indentations made by wild-type hyphae in PDMS were measured and the applied force was extrapolated from the standard curve. The mean indentation distance for wild-type hyphae was 950 ± 40 nm, which generated a tip force of ∼ 8.7 μN and a pressure of 1.2 MPa. The force applied by the rsr1Δ strain was not significantly different at 8 μN, although its increased hyphal diameter (2.7 vs. 2.4 μm, P = 0.001) slightly reduced the pressure applied to 1.1 MPa. The attenuated virulence seen in the rsr1Δ strain is therefore unlikely to be due to its inability to apply pressure to host tissue.
Frictional force is required between hypha and substrate for acute tip reorientation
Previous experiments had indicated that poorly adhered cells do not exhibit a normal level of thigmotropic response. To examine the role of cell adhesion in C. albicans hyphal tip reorientation, the thigmotropic responses of wild-type hyphae were quantified by growing cells on PDMS samples that had been chemically modified to generate seven surface chemistries with increasing capacity to bind C. albicans cells (Fig. 6A). The surfaces also featured ridges of 1 μm in height to elicit thigmotropic responses (Brand et al., 2008). Cell adhesion was poorest on untreated and UV-ozone (UVO3)-treated PDMS but increased on surfaces coated with extracellular matrix-associated proteins. The strongest adhesion was observed for Collagen IV-coated surfaces, consistent with previous studies (Yan et al., 1998). Adhesion rates were 30-fold higher on PDMS sputtered with gold and coated with Collagen IV than on untreated surfaces. In thigmotropism assays, yeast cells were adhered to these surfaces and hyphae grown by incubation in liquid medium in Petri dishes. In this system, hyphae were free to grow in three dimensions (X, Y and Z), so could grow over the ridges. Surfaces with low adhesion rates induced little hyphal reorientation. A 10-fold increase in adhesion induced a threefold increase in hyphal reorientation (Fig. 6B) and this remained constant at higher adhesion rates, indicating that a threshold level of cell adhesion was required to generate hyphal reorientation. To explore this further, hyphae were imaged in 1 μm live cell imaging chambers where cells were immobilized through the frictional pressure of the coverslip rather than by cell adhesion. Although immobilized hyphae reoriented by 90° on perpendicular contact with a barrier (Fig. 6C; Movie S1), cells in deeper chambers were exposed to less frictional force and underwent sub-apical bending in preference to tip reorientation. In these conditions, the angle of approach was maintained by the tip in relation to the obstacle (Fig. 6D; Movie S5). This demonstrates that tip contact alone is insufficient to trigger hyphal reorientation and, instead, reorientation in C. albicans requires a degree of mechanical stress (Fig. 6E). This is generated by frictional or adhesive force along the length of the hypha that is sufficient to counter the backward thrust of forward tip growth and prevent dissociation of the cell from the substratum.
Spk position correlates with specific directional responses but is not a predictor of growth direction
In this study, the asymmetrical position of the Spk in the hyphal apex of wild-type cells correlated with changes in the direction of growth elicited by surface topography. However, when the position of Spk travel over time was mapped onto final hyphal shape, there were numerous examples where its trajectory had diverged from the overall direction of growth (arrows in Fig. 7; Movie S4). These observations indicate that the position of the Spk is not an absolute predictor of the direction of growth in C. albicans and instead may lag behind the repositioning of other directional determinants.
Discussion
Contact-dependent tip asymmetry drives hyphal responses to surface topography
The production of hyphae by C. albicans is associated with tissue invasion in humans, but little is known about how its hyphal behaviours facilitate interactions with the host. Here we show that, during growth on surfaces as opposed to embedded conditions, C. albicans hyphal tips are morphologically asymmetrical and this extends to the intracellular positioning of key cell polarity complexes – the Spk, polarisome and exocyst – which translocate across the apex in response to touch. Our finding that the Spk orients towards the softer of two surfaces suggests that C. albicans may be able to sense surface stiffness. In U. appendiculatus, surface stiffness triggers spore germination (Terhune and Hoch, 1993) but it is not known how the mechanical properties of a surface are sensed by fungi.
Our results suggest a model whereby tip asymmetry is fundamental to the thigmotropic response to small obstacles because it positions the polarity machinery, and hence the growth site, close to the substratum. Encounters with obstacles can therefore only occur in left- or right-hand turns in the horizontal plane of the surface (Fig. 8A). Hyphae of the rsr1Δ mutant do not reorient thigmotropically (Brand et al., 2008). Our findings that rsr1Δ tips do not maintain an asymmetrical morphology and the Spk wanders within the tip suggests that the polarity machinery spends more time located above the substrate surface than in wild-type cells, thereby permitting rsr1Δ hyphae to grow straight over obstacles of less than half their diameter in height (Fig. 8B).
An equally important requirement for thigmotropism is frictional force between the hypha and the substrate. Tip contact alone was not sufficient to trigger reorientation. Instead, considerable pressure and mechanical stress had to be generated at the tip before reorientation occurred. This may contribute to pathogenicity, as discussed below, but the requirement for the forward thrust of tip growth to be countered by hyphal friction in order to generate tip pressure may explain why morphogenesis in C. albicans is accompanied by expression of multiple adhesins that are not present in yeast cells. The ability to adhere tightly to the host in order to generate penetrative force is an important factor in plant pathogenesis, where appressoria generate strong adhesion to the leaf surface so that extension of the penetration peg does not detach the fungus from its host (Bechinger et al., 1999).
Asymmetrical tip growth enabled C. albicans hyphae to follow contours ranging from gentle curves to acute bends of 90°, suggesting that this morphology plays a key role in probing underlying unconformities in the growth surface (Fig. 8C). Hyphae that had not undergone direct tip contact did not follow contours (Fig. 8D). Acute changes in growth direction were followed by a reversion to the initial overall growth trajectory when possible. This phenomenon has been termed ‘directional memory’ and has been observed in plant root hairs and Neurospora crassa, although not in pollen tubes (Bibikova et al., 1997; Held et al., 2011; Agudelo et al., 2013). This may be indicative of the nutrient foraging function of roots and hyphae, while pollen tubes are required to home into a specific target. Hyphae of the rsr1Δ mutant followed contours when the Spk was asymmetrically skewed towards the substrate, but when the Spk position in this mutant meandered its hyphae underwent random changes in growth trajectory. These two rsr1Δ populations are represented in Fig. 4F. The failure of the rsr1Δ mutant to remain closely apposed to the host surface and maintain a growth trajectory may contribute to its inability to invade host cell layers and hence its attenuated virulence (Yaar et al., 1997; Brand et al., 2008).
The Spk is not an absolute predictor of growth direction
Previous studies of hyphal growth have suggested that the position of Spk is a predictor of the site of new tip growth. In this study, the Spk position was predictive of a specific growth response but we observed multiple examples of new growth occurring away from the site of the Spk. One possibility was that changes in hyphal growth direction were brought about by the incorporation of more cell wall material at the Spk side of the hyphal apex than the other. However, our observation that the Spk maintains a stable asymmetrical position during growth along a barrier without causing curvature of the hypha does not support this idea. The advent of molecular approaches coupled with improved live cell imaging may help to elucidate the relationship between Spk structure, function and directional growth responses.
Hyphal tip force and adaptation to the host
The generation of penetrative force in human pathogenic fungi has not previously been studied. Many fungal plant pathogens produce specialist structures that penetrate plant cuticles by mechanical force alone. For example, the cereal pathogen, Colletotrichum graminicola, produces a penetration peg that exerts a force of 17 μN (Bechinger et al., 1999). The only filamentous human pathogen studied to date is the oomycete, Pythium insidiosum, which exerted a force of 2 μN and an applied pressure of 0.14 MPa (MacDonald et al., 2002). This was thought to be insufficient to penetrate human tissue without the aid of degradative enzymes because, using the little data available on human skin mechanics, it was calculated that the pressure required was an order of magnitude higher, i.e. 1–10 MPa (Bechinger et al., 1999; Ravishankar et al., 2001; Bastmeyer et al., 2002). The measurement of force exerted by the hyphae of small fungi such as C. albicans is technically challenging. Indentation of silicone elastomer was used to establish a growth stalling force for Schizosaccharomyces pombe of 11.3 μN, using the published Young's modulus of the elastomer (Minc et al., 2009). Here, we used atomic force microscopy to generate a standard curve of force versus indentation distance specific to the silicone elastomer we used. We estimated the force applied by the C. albicans tip to be ∼ 8–9 μN, with a resulting tip pressure of ∼ 1.2 MPa. The force required to pierce a murine oocyte with an IVF needle of 5 μm diameter was reported as 7.5 μN, or 13.0 μN for an embryo (Sun et al., 2003). Our measurements fell within this range so it seems likely that C. albicans hyphae can penetrate host cell membranes using mechanical force alone. Consistent with this, C. albicans hyphae growing in biofilms are known to penetrate soft medical silicone, which has a Young's modulus similar to that of human cartilage (Leonhard et al., 2013). The mechanical piercing of the murine oocyte with a needle distended the plasma membrane by 45 μm before it was finally breached (Sun et al., 2003). A similar distension of the macrophage membrane prior to its breaching by C. albicans hyphae has been observed (McKenzie et al., 2010), suggesting that mechanical force alone is operating in this context. However, enzyme activity may be important for efficient penetration of certain tissues in vivo, where inward distention of epithelial cells by hyphae has been observed but its depth has not been measured (Dalle et al., 2010).
The observation that hyphal reorientation occurs at tip pressures higher than that required for plasma membrane penetration suggests that C. albicans hyphae are programmed to attempt tissue penetration but reorient if greater resistance is met. If hyphal reorientation was triggered at a lower tip pressure, hyphae would not be able to penetrate host cell membranes. Other aspects of C. albicans hyphal biology may specifically support its penetrative ability. For example, the bread mould fungus, N. crassa, exerts a maximum force and pressure of only 3.2 μN and 0.25 MPa, respectively, and undergoes tip splitting on perpendicular contact with an obstacle (Money et al., 2004; Held et al., 2011). The lack of tip-splitting behaviour in C. albicans may be a further biological feature that helps the pathogen to apply the pressure required to infiltrate the tissue of its host.
Together, these findings suggest how the emergent properties of polarized hyphal growth result in exploratory behaviours that are likely to be fundamental to all filamentous fungal pathogens.
Experimental procedures
Strains and growth media
The C. albicans strains and standard culture methods used in this study are detailed in Supplementary Table S1 and Supplementary Methods.
Preparation of PDMS and glass substrates
PDMS (Sylgard-184, Dow Corning) was mixed at a curing agent to elastomer ratio of 1:10, de-gassed, cast in a 10 cm2 Petri dish (no patterning, for adhesion assays) or on a nickel shim with nano-fabricated obstacles of 1.05 or 1.5 μm (Kelvin Nanotechnology, Glasgow, UK) and cured for 2 h at 60°C. Chemical modification of PDMS surfaces: UVO3 treatment for 30 min (Jelight) or gold sputtering at 25 mA for 1 min with a Sputter Coater K550 (EMITECH) with overnight coating with Collagen I (0.05 mg ml−1 in phosphate-buffered saline (PBS) pH 7.0), Collagen IV (0.05 mg ml−1 in PBS pH 7.0), poly-L-lysine (0.01% in ddH2O) or fibronectin (0.05 mg ml−1 in ddH2O) as indicated. Substrates were dried for 24 h at RT. Surface modification was validated by quantifying changes in contact angle using the sessile drop method on a goniometer (First Ten Angstroms FTA1000, V2.1), and by X-ray photoelectron spectroscopy of key samples (see Supplementary Methods). Glass substrates for asymmetry experiments were silanized by acid washing in 1.0 M HCl and treating with 5% dimethylsilane in xylene for 5 min before drying, further washing and sterilizing at 200°C. The mean contact angles [± standard deviation (SD)] of untreated or silanized glass were 68 ± 6.4° and 91 ± 4.5° respectively.
Adhesion and thigmotropism assays
For adhesion assays, yeast cell concentrations were normalized and cells adhered to PDMS surfaces in dH2O for 30 min at room temperature before washing to remove non-adhered cells. Results were reported as cells adhered per mm2. For thigmotropism assays, adhered cells were incubated in 20% FCS, 2% glucose at 37°C for 6 h in Petri dishes. Results were reported as the mean percentage (± SD, n = 6) of hypha-ridge interactions resulting in tip reorientation. Images were captured with an Olympus BX50 (Olympus) fitted with a Lumenera Infinity 1 CMOS (Lumenera) camera.
Determination of force and pressure values
Indentation distance of hyphal tips into PDMS was measured by DIC microscopy from time lapse images to ascertain the point of maximal indentation. Measurements were used to extrapolate force values from a standard curve of force versus indentation distance, generated by atomic force microscopy (see Fig. S2 for methods). Hyphal tip pressure was derived from the equation P = F/A, where F is the force and A is the hyphal tip surface contact area, which was assumed to be hemispherical. Contact area (A) was calculated as 2πRr, where R was the 1.2 μm radius of a hypha and r was the indentation distance.
Live cell imaging
Yeast cells in 20% FCS and 2% glucose were spread on 1.5 cm2 PDMS adhered to a microscope slide, and sealed under a coverslip using Velapa (1:1:1 Vaseline: lanolin: paraffin wax; Veses and Gow, 2008). The slide was incubated at 37°C on an inverted Zeiss AxioObserver Z1 running Axiovision (v. 4.8; Carl Zeiss) with incubator hood (PeCon GmbH). Multi-point time lapse images were acquired using a Plan-Neofluar 40×/1.3NA oil immersion objective lens (Carl Zeiss) and a 16 bit CoolSNAP H2 CCD camera (Photometrics). Z-stacks were acquired at Nyquist sampling rates and deconvolved using Axiovision. GFP was imaged using a Zeiss #62 high efficiency (HE) B/G/HR filter cube. YFP was imaged using a Zeiss #60 HE C/Y/HR filter cube or a Laser 2000 YFP filter (Semrock). Image analysis was performed using ImageJ (v. 1.45s; NIH) or Volocity (v. 6.1; Perkin Elmer) for three-dimensional rendering. See Supplementary Methods for image analysis methods.
Statistical analyses
Data were analysed using Prism 5.04 (GraphPad). Two-tailed independent Student's t-tests were used for tip reorientation time (n = 74) and indentation distance (n = 61). Thigmotropism experiments were analysed by analysis of variance with a post-hoc Dunnett's t-test (n = 6 independent experiments). Correlation analysis was used for directional memory assays (n = 67). A chi-square test was used for analysing asymmetry on surfaces (n = 18).
Acknowledgments
We thank Marco Thiel for assistance with data interpretation, Peter Sudbery for the provision of strains and Jeremy Craven for useful discussions. This work was supported by a BBSRC-DTG to D. D. T., NIH award DK083592 to F. J. B. and P. A. J., and a Royal Society URF UF080611 and MRC NIRG 90671 to A. C. B.
Supporting Information
Additional Supporting Information may be found in the online version of this article at the publisher's web-site:
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