In the Funding section, the grant number for the Research Funds for Distinguished Young Scientists in Fujian Provincial Department of Education grant is incorrect. Please refer to the correct Funding section here.
This work was funded by National Natural Science Foundation of China (31271782), Research Funds for Distinguished Young Scientists in Fujian Provincial Department of Education (JA13090) and Research Funds for Distinguished Young Scientists in Fujian Agriculture and Forestry University (xjq201202). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Additionally, there is an error in the Reference section of Table 1. Please refer to the correct Table 1 here.
Table 1. Thirteen reference genes surveyed in this work with their amplification and expression characteristics in Saccharum officinarum.
| gene | Accession number | Functions | Primer F/R (5'-3') | Amplicon length (nt) | Tm (°C) | PCR efficiencies (E %) | RegressionCoefficient (R2) | Mean Ct | SD | CV (%) | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 25S rRNA | BQ536525 | 25S ribosomal RNA | GCAGCCAAGCGTTCATAGC CCTATTGGTGGGTGAACAATCC | 108 | 60 | 113.83 | 0.9982 | 14.27 | 0.71 | 5.01 | Saccharum spp.L. [32] |
| GAPDH | CA254672 | glyceraldehyde-3-phosphate dehydrogenase | CACGGCCACTGGAAGCA TCCTCAGGGTTCCTGATGCC | 101 | 60 | 93.24 | 0.9986 | 24.64 | 1.23 | 5.01 | Saccharum spp.L. [32] |
| ACT * | CA148161 | β-actin | CTGGAATGGTCAAGGCTGGT TCCTTCTGTCCCATCCCTACC | 112 | 60 | 109.06 | 0.9988 | 25.03 | 1.06 | 4.23 | Saccharum spp.L. [32] |
| TUB ** | CA222437 | β-tubulin | CCAAGTTCTGGGAGGTGATCTG TTGTAGTAGACGTTGATGCGCTC | 103 | 60 | 94.76 | 0.9997 | 26.91 | 1.43 | 5.31 | Saccharum spp.L. [32] |
| 18S rRNA | SCFRRE06 | 18S ribosomal RNA | CTACGTCCCTGCCCTTTGTACA ACACTTCACCGGACCATTCAA | 65 | 60 | 97.24 | 0.9982 | 15.38 | 0.74 | 4.81 | Oryza sativa [12] |
| UBQ | CA262530.1 | Ubiquitin | ACCACTTCGACCGCCACTACTG CACCACCTAGCAAGGCTTTCCATTTC | 69 | 60 | 102.3 | 0.9998 | 26.47 | 1.29 | 4.88 | Oryza sativa [12] |
| eEF-1a | EF581011.1 | Eukaryotic elongation factor 1a | TTTCACACTTGGAGTGAAGCAGAT GACTTCCTTCACAATCTCATCATAA | 103 | 60 | 96.87 | 0.9998 | 24.24 | 1.33 | 5.48 | Oryza sativa [12] |
| eIF-4α | CA275432.1 | Eukaryotic initiation factor 4a | TTGTGCTGGATGAAGCTGATG GGAAGAAGCTGGAAGATATCATAGA | 76 | 60 | 98.87 | 0.9876 | 27.98 | 1.24 | 4.42 | Oryza sativa [12] |
| CUL | CF574093.1 | Cullin | TGCTGAATGTGTTGAGCAGC TTGTCGCGCTCCAAGTAGTC | 105 | 60 | 105.66 | 0.999 | 27.05 | 1.49 | 5.52 | Zea mays [14] |
| CAC | CA203604.1 | Clathrin adaptor complex | ACAACGTCAGGCAAAGCAAA AGATCAACTCCACCTCTGCG | 112 | 60 | 99.5 | 0.9999 | 27.88 | 1.41 | 5.05 | Brassica juncea [15] |
| TIPS-41 | CA228782.1 | Tonoplastic intrinsic protein | CACCTGTTGAGGTTCCTGCT CACAGCATCACTCCCACAGT | 116 | 60 | 113.56 | 0.9964 | 28.09 | 2.15 | 7.67 | Brassica juncea [15>] |
| APRT | CA089592.1 | Anthranilate phosphoribosyl transferase | TGACACATTCCCAACCTCAA ATCTCTCTCCCTGAGTGGCA | 119 | 60 | 102.53 | 0.9993 | 27.35 | 1.37 | 5 | Saccharum spp.L. [30] |
| PRR | CA275446.1 | Pseudo response regulator | GCCAAATTCAGGCAGAAAAG CACCCTAGGCCTTGTTTCAG | 93 | 60 | 98.13 | 0.9999 | 28.21 | 2.04 | 7.25 | Saccharum spp.L. [30] |
Mean Ct values and RNA concentration were used for calculating slopes and correlation coefficients (R2). According to the formula [E = (10(−1/slope)−1)×100%, qPCR efficiencies (E) were calculated based on the standard curves. Mean Ct value (mean), Standard deviation (SD) and Covariance (CV) were calculated by Microsoft Excel 2003 and the Ct values from all of the samples were used. The sequence numbers were obtained from www.ncbi.nlm.nih.gov/nucest/?term=sugarcane.
Reference
- 1. Ling H, Wu Q, Guo J, Xu L, Que Y (2014) Comprehensive Selection of Reference Genes for Gene Expression Normalization in Sugarcane by Real Time Quantitative RT-PCR. PLoS ONE 9(5): e97469 doi: 10.1371/journal.pone.0097469 [DOI] [PMC free article] [PubMed] [Google Scholar]
