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Acta Crystallographica Section E: Crystallographic Communications logoLink to Acta Crystallographica Section E: Crystallographic Communications
. 2015 Jan 3;71(Pt 2):o70–o71. doi: 10.1107/S2056989014027273

Crystal structure of ethyl 2-(2-{(1E)-[(E)-2-(2-hy­droxy­benzyl­idene)hydrazin-1-yl­idene]meth­yl}phen­oxy)acetate

Mehmet Akkurt a, Joel T Mague b, Shaaban K Mohamed c,d, Eman A Ahmed e, Mustafa R Albayati f,*
PMCID: PMC4384580  PMID: 25878876

Abstract

In the title compound, C18H18N2O4, the planes of the benzene rings are twisted with respect to each other at 27.25 (7)°. The mol­ecule displays an extended conformation with an intra­molecular O—H⋯N hydrogen bond. In the crystal, weak C—H⋯O inter­actions link the mol­ecules, forming supra­molecular chains running along the b-axis direction.

Keywords: crystal structure, Schiff base ligand, hydrogen bonding

Related literature  

For a similar structure, see: Mague et al. (2015). For background to related Schiff base ligands and their biological activity, see: Adsule et al. (2006); Karthikeyan et al. (2006); Amimoto & Kawato (2005); Cohen & Schmidt (1964).graphic file with name e-71-00o70-scheme1.jpg

Experimental  

Crystal data  

  • C18H18N2O4

  • M r = 326.34

  • Monoclinic, Inline graphic

  • a = 17.6846 (4) Å

  • b = 4.8645 (1) Å

  • c = 19.2235 (4) Å

  • β = 107.357 (1)°

  • V = 1578.43 (6) Å3

  • Z = 4

  • Cu Kα radiation

  • μ = 0.81 mm−1

  • T = 150 K

  • 0.20 × 0.09 × 0.06 mm

Data collection  

  • Bruker D8 VENTURE PHOTON 100 CMOS diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2014) T min = 0.90, T max = 0.95

  • 11331 measured reflections

  • 3063 independent reflections

  • 2538 reflections with I > 2σ(I)

  • R int = 0.031

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.038

  • wR(F 2) = 0.109

  • S = 1.06

  • 3063 reflections

  • 218 parameters

  • H-atom parameters constrained

  • Δρmax = 0.24 e Å−3

  • Δρmin = −0.21 e Å−3

Data collection: APEX2 (Bruker, 2014); cell refinement: SAINT (Bruker, 2014); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2008); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2012); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989014027273/xu5832sup1.cif

e-71-00o70-sup1.cif (371.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014027273/xu5832Isup2.hkl

e-71-00o70-Isup2.hkl (168.3KB, hkl)

Supporting information file. DOI: 10.1107/S2056989014027273/xu5832Isup3.cml

. DOI: 10.1107/S2056989014027273/xu5832fig1.tif

Perspective view of the title mol­ecule with 50% probability ellipsoids and showing the atom labeling scheme and the intra­molecular O—H⋯N hydrogen bond.

b . DOI: 10.1107/S2056989014027273/xu5832fig2.tif

Packing viewed down the b axis showing C—H⋯O inter­actions as black dotted lines.

CCDC reference: 1039095

Additional supporting information: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (, ).

DHA DH HA D A DHA
O1H1AN1 0.84 1.85 2.6441(17) 158
C15H15AO4i 0.99 2.58 3.3568(19) 136
C15H15BO3ii 0.99 2.57 3.440(2) 147

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The support of NSF–MRI grant No. 1228232 for the purchase of the diffractometer and Tulane University for support of the Tulane Crystallography Laboratory are gratefully acknowledged.

supplementary crystallographic information

S1. Comment

Schiff bases of salicylaldehyde have gained importance from physiological and pharmacological activities point of view (Adsule et al., 2006; Karthikeyan et al., 2006). They also may exhibit thermochromism or photochromism depending on the planarity or nonplanarity, respectively, of the molecule (Amimoto & Kawato, 2005; Cohen & Schmidt, 1964). As part of our research efforts in the area of schiff base ligands we report in this study the synthesis and crystal structure determination of the title compound.

The title molecule is in an extended conformation with the phenyl rings C1–C6 and C9–C14, respectively, making dihedral angles of 7.4 (1)° and 19.8 (1)° with the mean plane of the central C7, N1, N2, C8 unit. The bond lengths and bond angles of the title molecule are normal and are comparable to those reported for a similar structure (Mague et al., 2015).

The former angle is smaller as a result of the intramolecular O1—H1a···N1 hydrogen bond (Table 1). The packing consists of chains of molecules formed by weak C15—H15B···O3 interactions running parallel to the b axis with adjacent pairs of chains associated via C15—H15a···O4 interactions across centers of symmetry (Fig. 2 and Table 1).

S2. Experimental

A mixture of 0.01 mol of 2-hydroxybenzohydrazide and 0.01 mol of ethyl 2-(2-formylphenoxy)acetate in 20 ml of ethanol was heated under reflux for 2 h. The solid product which precipitated from the hot solution was collected by filtration and dried under vacuum. Colourless crystals sufficient for X-ray diffraction were obtained by recrystallization from an ethanol solution. m.p. 428 K, yield 92%.

S3. Refinement

H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 - 0.99 Å) and refined in riding mode while hydroxyl-O atom was located in a difference Fourier map and refined by riding in its as-found relative position to oxygen atom. Uiso(H) = 1.5Ueq(C) for methyl H toms and 1.2Ueq(C,O) for the others.

Figures

Fig. 1.

Fig. 1.

Perspective view of the title molecule with 50% probability ellipsoids and showing the atom labeling scheme and the intramolecular O—H···N hydrogen bond.

Fig. 2.

Fig. 2.

Packing viewed down the b axis showing C—H···O interactions as black dotted lines.

Crystal data

C18H18N2O4 F(000) = 688
Mr = 326.34 Dx = 1.373 Mg m3
Monoclinic, P21/n Cu Kα radiation, λ = 1.54178 Å
a = 17.6846 (4) Å Cell parameters from 6837 reflections
b = 4.8645 (1) Å θ = 4.1–72.5°
c = 19.2235 (4) Å µ = 0.81 mm1
β = 107.357 (1)° T = 150 K
V = 1578.43 (6) Å3 Column, colourless
Z = 4 0.20 × 0.09 × 0.06 mm

Data collection

Bruker D8 VENTURE PHOTON 100 CMOS diffractometer 3063 independent reflections
Radiation source: INCOATEC IµS micro–focus source 2538 reflections with I > 2σ(I)
Mirror monochromator Rint = 0.031
Detector resolution: 10.4167 pixels mm-1 θmax = 72.5°, θmin = 3.0°
ω scans h = −18→21
Absorption correction: multi-scan (SADABS; Bruker, 2014) k = −5→6
Tmin = 0.90, Tmax = 0.95 l = −23→23
11331 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109 H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.0535P)2 + 0.5415P] where P = (Fo2 + 2Fc2)/3
3063 reflections (Δ/σ)max < 0.001
218 parameters Δρmax = 0.24 e Å3
0 restraints Δρmin = −0.21 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 - 0.99 Å) while that attached to oxygen was placed in a location derived from a difference map and its parameters adjusted to give O—H = 0.84 Å. All were included as riding contributions with isotropic displacement parameters 1.2 - 1.5 times those of the attached atoms.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.26107 (6) 0.1064 (3) 0.62511 (6) 0.0392 (3)
H1A 0.2450 0.2256 0.5924 0.047*
O2 0.33072 (6) 1.1408 (2) 0.46429 (6) 0.0318 (3)
O3 0.42576 (7) 0.9110 (2) 0.38921 (7) 0.0394 (3)
O4 0.49863 (7) 1.2963 (2) 0.40435 (6) 0.0365 (3)
N1 0.17349 (7) 0.4391 (3) 0.52416 (6) 0.0274 (3)
N2 0.15351 (7) 0.6296 (3) 0.46651 (7) 0.0286 (3)
C1 0.11819 (9) 0.1146 (3) 0.58929 (8) 0.0259 (3)
C2 0.19168 (9) 0.0129 (3) 0.63240 (8) 0.0277 (3)
C3 0.19421 (10) −0.1914 (3) 0.68369 (8) 0.0322 (3)
H3 0.2438 −0.2593 0.7130 0.039*
C4 0.12504 (10) −0.2958 (3) 0.69212 (8) 0.0333 (4)
H4 0.1274 −0.4362 0.7271 0.040*
C5 0.05185 (10) −0.1982 (4) 0.65017 (9) 0.0355 (4)
H5 0.0044 −0.2718 0.6561 0.043*
C6 0.04881 (9) 0.0071 (3) 0.59976 (9) 0.0326 (4)
H6 −0.0012 0.0767 0.5717 0.039*
C7 0.11221 (9) 0.3247 (3) 0.53449 (8) 0.0273 (3)
H7 0.0611 0.3800 0.5051 0.033*
C8 0.21343 (9) 0.7639 (3) 0.46080 (8) 0.0259 (3)
H8 0.2637 0.7370 0.4958 0.031*
C9 0.20573 (8) 0.9589 (3) 0.40100 (8) 0.0248 (3)
C10 0.13833 (9) 0.9571 (3) 0.33998 (8) 0.0298 (3)
H10 0.0963 0.8334 0.3385 0.036*
C11 0.13200 (9) 1.1324 (3) 0.28202 (8) 0.0323 (4)
H11 0.0860 1.1286 0.2409 0.039*
C12 0.19294 (9) 1.3133 (3) 0.28420 (8) 0.0314 (3)
H12 0.1885 1.4344 0.2444 0.038*
C13 0.26054 (9) 1.3203 (3) 0.34376 (8) 0.0291 (3)
H13 0.3022 1.4450 0.3447 0.035*
C14 0.26682 (8) 1.1433 (3) 0.40201 (8) 0.0251 (3)
C15 0.39957 (9) 1.2843 (3) 0.46170 (8) 0.0312 (3)
H15A 0.4364 1.3016 0.5117 0.037*
H15B 0.3846 1.4718 0.4425 0.037*
C16 0.44124 (9) 1.1381 (3) 0.41393 (8) 0.0290 (3)
C17 0.54618 (11) 1.1827 (4) 0.36101 (11) 0.0423 (4)
H17A 0.5114 1.1105 0.3142 0.051*
H17B 0.5796 1.0304 0.3876 0.051*
C18 0.59662 (11) 1.4085 (4) 0.34751 (11) 0.0444 (4)
H18A 0.5629 1.5554 0.3199 0.067*
H18B 0.6306 1.3375 0.3196 0.067*
H18C 0.6297 1.4814 0.3942 0.067*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0279 (6) 0.0439 (7) 0.0432 (7) −0.0035 (5) 0.0066 (5) 0.0125 (5)
O2 0.0294 (5) 0.0372 (6) 0.0291 (5) −0.0080 (5) 0.0091 (4) 0.0026 (5)
O3 0.0414 (7) 0.0279 (6) 0.0506 (7) −0.0041 (5) 0.0164 (5) −0.0039 (5)
O4 0.0364 (6) 0.0330 (6) 0.0461 (7) −0.0077 (5) 0.0212 (5) −0.0072 (5)
N1 0.0294 (6) 0.0258 (7) 0.0276 (6) −0.0011 (5) 0.0092 (5) 0.0035 (5)
N2 0.0296 (6) 0.0270 (7) 0.0299 (6) 0.0001 (5) 0.0101 (5) 0.0053 (5)
C1 0.0290 (7) 0.0236 (7) 0.0256 (7) −0.0023 (6) 0.0091 (6) −0.0019 (6)
C2 0.0291 (7) 0.0262 (8) 0.0270 (7) −0.0039 (6) 0.0073 (6) −0.0035 (6)
C3 0.0351 (8) 0.0310 (8) 0.0280 (7) 0.0007 (7) 0.0058 (6) 0.0022 (7)
C4 0.0459 (9) 0.0284 (8) 0.0286 (7) 0.0006 (7) 0.0157 (7) 0.0035 (6)
C5 0.0360 (8) 0.0355 (9) 0.0405 (9) −0.0024 (7) 0.0197 (7) 0.0038 (7)
C6 0.0288 (8) 0.0336 (9) 0.0367 (8) 0.0000 (7) 0.0119 (6) 0.0036 (7)
C7 0.0259 (7) 0.0260 (8) 0.0301 (7) 0.0004 (6) 0.0084 (6) 0.0008 (6)
C8 0.0269 (7) 0.0243 (8) 0.0278 (7) 0.0006 (6) 0.0102 (6) 0.0002 (6)
C9 0.0266 (7) 0.0222 (7) 0.0280 (7) 0.0029 (6) 0.0121 (6) 0.0006 (6)
C10 0.0265 (7) 0.0300 (8) 0.0340 (8) −0.0003 (6) 0.0108 (6) 0.0013 (7)
C11 0.0292 (8) 0.0357 (9) 0.0308 (8) 0.0051 (7) 0.0069 (6) 0.0045 (7)
C12 0.0372 (8) 0.0286 (8) 0.0314 (8) 0.0082 (7) 0.0147 (6) 0.0080 (7)
C13 0.0333 (8) 0.0251 (8) 0.0335 (8) −0.0007 (6) 0.0170 (6) 0.0015 (6)
C14 0.0261 (7) 0.0244 (7) 0.0272 (7) 0.0025 (6) 0.0115 (6) −0.0007 (6)
C15 0.0295 (8) 0.0331 (9) 0.0309 (8) −0.0079 (7) 0.0090 (6) −0.0026 (7)
C16 0.0275 (7) 0.0271 (8) 0.0302 (7) −0.0022 (6) 0.0053 (6) 0.0018 (6)
C17 0.0435 (10) 0.0358 (10) 0.0562 (11) 0.0005 (8) 0.0280 (8) −0.0050 (8)
C18 0.0440 (10) 0.0438 (11) 0.0537 (11) 0.0029 (8) 0.0273 (8) 0.0046 (9)

Geometric parameters (Å, º)

O1—C2 1.3548 (18) C8—C9 1.465 (2)
O1—H1A 0.8403 C8—H8 0.9500
O2—C14 1.3797 (17) C9—C14 1.400 (2)
O2—C15 1.4172 (17) C9—C10 1.401 (2)
O3—C16 1.2016 (19) C10—C11 1.381 (2)
O4—C16 1.3295 (18) C10—H10 0.9500
O4—C17 1.4577 (19) C11—C12 1.382 (2)
N1—C7 1.2854 (19) C11—H11 0.9500
N1—N2 1.4064 (17) C12—C13 1.387 (2)
N2—C8 1.2772 (19) C12—H12 0.9500
C1—C6 1.402 (2) C13—C14 1.390 (2)
C1—C2 1.406 (2) C13—H13 0.9500
C1—C7 1.449 (2) C15—C16 1.515 (2)
C2—C3 1.391 (2) C15—H15A 0.9900
C3—C4 1.378 (2) C15—H15B 0.9900
C3—H3 0.9500 C17—C18 1.486 (3)
C4—C5 1.389 (2) C17—H17A 0.9900
C4—H4 0.9500 C17—H17B 0.9900
C5—C6 1.381 (2) C18—H18A 0.9800
C5—H5 0.9500 C18—H18B 0.9800
C6—H6 0.9500 C18—H18C 0.9800
C7—H7 0.9500
C2—O1—H1A 101.2 C9—C10—H10 119.5
C14—O2—C15 117.06 (11) C10—C11—C12 119.60 (14)
C16—O4—C17 117.01 (13) C10—C11—H11 120.2
C7—N1—N2 112.44 (12) C12—C11—H11 120.2
C8—N2—N1 112.64 (12) C11—C12—C13 120.84 (14)
C6—C1—C2 118.59 (14) C11—C12—H12 119.6
C6—C1—C7 119.35 (14) C13—C12—H12 119.6
C2—C1—C7 122.06 (13) C12—C13—C14 119.45 (14)
O1—C2—C3 118.34 (14) C12—C13—H13 120.3
O1—C2—C1 121.82 (14) C14—C13—H13 120.3
C3—C2—C1 119.84 (14) O2—C14—C13 123.53 (13)
C4—C3—C2 120.30 (15) O2—C14—C9 115.80 (12)
C4—C3—H3 119.9 C13—C14—C9 120.65 (14)
C2—C3—H3 119.9 O2—C15—C16 111.61 (13)
C3—C4—C5 120.80 (15) O2—C15—H15A 109.3
C3—C4—H4 119.6 C16—C15—H15A 109.3
C5—C4—H4 119.6 O2—C15—H15B 109.3
C6—C5—C4 119.29 (15) C16—C15—H15B 109.3
C6—C5—H5 120.4 H15A—C15—H15B 108.0
C4—C5—H5 120.4 O3—C16—O4 124.80 (15)
C5—C6—C1 121.17 (15) O3—C16—C15 125.22 (14)
C5—C6—H6 119.4 O4—C16—C15 109.98 (13)
C1—C6—H6 119.4 O4—C17—C18 107.37 (14)
N1—C7—C1 122.39 (14) O4—C17—H17A 110.2
N1—C7—H7 118.8 C18—C17—H17A 110.2
C1—C7—H7 118.8 O4—C17—H17B 110.2
N2—C8—C9 120.88 (13) C18—C17—H17B 110.2
N2—C8—H8 119.6 H17A—C17—H17B 108.5
C9—C8—H8 119.6 C17—C18—H18A 109.5
C14—C9—C10 118.41 (13) C17—C18—H18B 109.5
C14—C9—C8 120.88 (13) H18A—C18—H18B 109.5
C10—C9—C8 120.65 (13) C17—C18—H18C 109.5
C11—C10—C9 121.06 (14) H18A—C18—H18C 109.5
C11—C10—H10 119.5 H18B—C18—H18C 109.5
C7—N1—N2—C8 173.32 (13) C8—C9—C10—C11 −177.30 (14)
C6—C1—C2—O1 179.77 (14) C9—C10—C11—C12 −0.2 (2)
C7—C1—C2—O1 0.1 (2) C10—C11—C12—C13 0.3 (2)
C6—C1—C2—C3 0.4 (2) C11—C12—C13—C14 −0.2 (2)
C7—C1—C2—C3 −179.22 (14) C15—O2—C14—C13 −13.6 (2)
O1—C2—C3—C4 −178.94 (14) C15—O2—C14—C9 168.16 (13)
C1—C2—C3—C4 0.4 (2) C12—C13—C14—O2 −178.18 (13)
C2—C3—C4—C5 −0.5 (2) C12—C13—C14—C9 0.0 (2)
C3—C4—C5—C6 −0.4 (3) C10—C9—C14—O2 178.35 (13)
C4—C5—C6—C1 1.2 (3) C8—C9—C14—O2 −4.28 (19)
C2—C1—C6—C5 −1.3 (2) C10—C9—C14—C13 0.0 (2)
C7—C1—C6—C5 178.39 (15) C8—C9—C14—C13 177.39 (13)
N2—N1—C7—C1 177.86 (13) C14—O2—C15—C16 −71.06 (17)
C6—C1—C7—N1 177.23 (14) C17—O4—C16—O3 −0.4 (2)
C2—C1—C7—N1 −3.1 (2) C17—O4—C16—C15 178.44 (14)
N1—N2—C8—C9 175.83 (12) O2—C15—C16—O3 −9.9 (2)
N2—C8—C9—C14 167.75 (14) O2—C15—C16—O4 171.21 (12)
N2—C8—C9—C10 −14.9 (2) C16—O4—C17—C18 170.82 (14)
C14—C9—C10—C11 0.1 (2)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1—H1A···N1 0.84 1.85 2.6441 (17) 158
C15—H15A···O4i 0.99 2.58 3.3568 (19) 136
C15—H15B···O3ii 0.99 2.57 3.440 (2) 147

Symmetry codes: (i) −x+1, −y+3, −z+1; (ii) x, y+1, z.

Footnotes

Supporting information for this paper is available from the IUCr electronic archives (Reference: XU5832).

References

  1. Adsule, S., Barve, V., Chen, D., Ahmed, F., Dou, Q. P., Padhye, S. & Sarkar, F. H. (2006). J. Med. Chem. 49, 7242–7246. [DOI] [PubMed]
  2. Amimoto, K. & Kawato, T. (2005). J. Photochem. Photobiol. Photochem. Rev. 6, 207–226.
  3. Brandenburg, K. & Putz, H. (2012). DIAMOND. Crystal Impact GbR, Bonn, Germany.
  4. Bruker (2014). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.
  5. Cohen, M. D. & Schmidt, G. M. J. (1964). J. Chem. Soc. pp. 1996–2000.
  6. Karthikeyan, M. S., Prasad, D. J., Poojary, B., Bhat, K. S., Holla, B. S. & Kumari, N. S. (2006). Bioorg. Med. Chem 14, 7482–7489. [DOI] [PubMed]
  7. Mague, J. T., Mohamed, S. K., Akkurt, M., Ahmed, E. A. & Omran, O. A. (2015). Acta Cryst. E71, o16. [DOI] [PMC free article] [PubMed]
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989014027273/xu5832sup1.cif

e-71-00o70-sup1.cif (371.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014027273/xu5832Isup2.hkl

e-71-00o70-Isup2.hkl (168.3KB, hkl)

Supporting information file. DOI: 10.1107/S2056989014027273/xu5832Isup3.cml

. DOI: 10.1107/S2056989014027273/xu5832fig1.tif

Perspective view of the title mol­ecule with 50% probability ellipsoids and showing the atom labeling scheme and the intra­molecular O—H⋯N hydrogen bond.

b . DOI: 10.1107/S2056989014027273/xu5832fig2.tif

Packing viewed down the b axis showing C—H⋯O inter­actions as black dotted lines.

CCDC reference: 1039095

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Crystallographic Communications are provided here courtesy of International Union of Crystallography

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