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. Author manuscript; available in PMC: 2015 Apr 17.
Published in final edited form as: Bioorg Med Chem Lett. 2011 Jan 11;21(5):1411–1413. doi: 10.1016/j.bmcl.2011.01.020

Synthesis and in vitro screening of novel N-benzyl aplysinopsin analogs as potential anticancer agents

Narsimha Reddy Penthala 1, Thirupathi Reddy Yerramreddy 1, Peter A Crooks 1,*
PMCID: PMC4400819  NIHMSID: NIHMS679061  PMID: 21295476

Abstract

A series of novel substituted (Z)-methyl 1-benzyl-3-((2,5-dioxoimidazolidin-4-ylidene)methyl)-1H-indoles (3a-f) and (Z)-5-((1-benzyl-1H-indol-3-yl)methylene)thiazolidine-2,4-diones (3g-o) have been synthesized utilizing microwave irradiation. These analogs were evaluated for in vitro cytotoxicity against a panel of 60 human tumor cell lines. Compound 3i exhibits potent growth inhibition against melanoma UACC-257 (GI50=13.3 nM) and OVCAR-8 ovarian (GI50=19.5 nM) cancer cells while possessing significant cytotoxicity (LC50=308 nM and LC50=851 nM, respectively) against the same cell lines within this series of compounds. A second analog, 3a, had GI50 values of 307 nM and 557 nM against SK-MEL-2 melanoma and A498 renal cancer cell lines, and exhibited GI50 values ranging from 0.30-6 µM against 98% of all cancer cell lines in the 60-cell panel. Thus, (Z)-5-((5-chloro-1-(4-fluorobenzyl)-1H-indol-3-yl)methylene)-2-iminothiazolidin-4-one (3i) and (Z)-methyl 1-(4-cyanobenzyl)-3-((2,5-dioxoimidazolidin-4-ylidene)methyl)-1H-indole-6-carboxylate (3a) can be regarded as useful lead compounds for further structural optimization as antitumor agents.

Keywords: N-benzyl indole-3-carboxaldehydes, hydantoin, 2-imino thiazolidin-4-one, in vitro cytotoxicity


Considerable effort has been focused on the development of anti-cancer agents that contain an indole moiety as their main structural motif.1-5 We have recently reported on the antitumor activity of a number of novel indole barbituric acid analogs and related compounds that act as both radiosensitizing agents and anticancer agents (for example, Fig 1. Structure A).6-7 Recently, our laboratory reported on the cytotoxicity of a series of (Z)-2-amino-5-(1-benzyl-1H-indol-3-yl)-methylene-1-methyl-1H-imidazol-4(5H)-ones against human tumor cell lines (for example Fig 1. Structure B).8 In this respect, Li et al. have synthesized and studied a series of structurally related N-heterocyclic indolyl glyoxylamides (Fig 1. Structure C), and found that such compounds possess marked activity against several cancer cell lines, including multidrug resistance (MDR) cell lines.9 N-Benzylindole and indolizine glyoxyl amides (Fig 1. Structure D) have also been shown to exhibit substantial in vitro anti-proliferative activity against various cancer cell lines, including hematologic and solid tumor cell lines, i.e., leukemia, breast, colon, and uterine.10

Fig. 1.

Fig. 1

Cytotoxic indole-derived aplysinopsin analogs (A–D)

In our continuing efforts to develop small molecules that function as novel anticancer agents we have now synthesized a series of (Z)-methyl-1-benzyl-3-((2,5-dioxoimidazolidin-4-ylidene)methyl)-1H-indoles (3a-f) and a series of (Z)-5-((1-benzyl-1H-indol-3-yl)methylene)thiazolidine-2,4-diones (3g-o) as second generation analogs of aplysinopsin analog B (Fig. 1).

In the synthesis of analogs 3a-3o, a series of substituted N-benzylindole-3-carboxaldehydes were initially synthesized in 85-90% yield by reacting the appropriate indole-3-carboxaldehyde with various substituted benzyl halides under phase-transfer catalytic (PTC) conditions using triethylbenzyl ammonium chloride (TEBA) and 50% w/v aqueous NaOH solution in dichloromethane (Scheme 1). Aldol condensation of the appropriate N-benzylindole-3-carboxaldehyde with hydantoin or 2-iminothiazolidin-4-one, in the presence of CH3COOH and sodium acetate under microwave irradiation conditions (1100 W; Kenmore, 30–60s) (Scheme 1), afforded a series of (Z)-methyl-1-benzyl-3-((2,5-dioxoimidazolidin-4-ylidene)methyl)-1H-indoles (3a-f) and (Z)-5-((1-benzyl-1H-indol-3-yl)methylene)-thiazolidine-2,4-diones (3g-o) (Table 1), respectively, in yields ranging from 85–93%. All the synthesized compounds were fully characterized by 1H NMR, 13C NMR.12

Scheme 1.

Scheme 1

Reagents and conditions: (a) Appropriate benzyl halides, 50% NaOH, CH2Cl2, TEBA, 2h b) Hydantoin or 2-iminothiazolidin-4-one, sodium acetate, acetic acid, microwave irradiation, 30-60 seconds, 85-93% yield.

Table 1.

N-benzyl aplysinopsin analogs (3a-o)

S. No. R1 R2 R3 X Y
3a COOCH3 H p-CN O NH
3b H COOCH3 p-CN O NH
3c H H p-CN O NH
3d H H H O NH
3e Cl H H O NH
3f OCH3 H H O NH
3g H H o-F NH S
3h H Cl o-F NH S
3i H Cl p-F NH S
3j H Br o-F NH S
3k H Br p-F NH S
3l COOCH3 H p-CN NH S
3m COOCH3 H p-COOCH3 NH S
3n H COOCH3 p-CN NH S
3o H COOCH3 p-COOCH3 NH S

The in vitro screening studies involved a two-stage process in the evaluation of compounds (3a-3o) against a 60 human tumor cell line panel. In the first stage of the screen, compounds which showed more than 60% growth inhibition in at least eight of the 60 tumor cell lines in single dose (10 µM) studies, were selected for the second stage five dose–response studies, according to the procedures described by Rubinstein et al.11

The human tumor cell line panel included leukemia, non-small cell lung, colon, CNS, melanoma, ovarian, renal, prostate, and breast cancer cell lines. From the single dose-response studies the imidazolidine-2,4-dione analog (3a) showed >60% growth inhibition in 50 of the 60 cancer cell lines utilized. The remainder of the analogs in this series did not qualify for five dose response screening. In the 2-iminothiazolidin-4-one series, analog (3i) showed more than 60% growth inhibition in 14 of the 60 cancer cell lines. The other compounds in the same series (3g-3h and 3j-3o) did not qualify for five dose testing.

Some structure-activity data could be generated from the initial single dose studies. In the para-cyano-N-benzylindoleimidazolidine-2,4-dione series (3a-c), the 6-carbomethoxyindole analog 3a exhibited the best growth inhibition, and moving this substituent to the 5-indolic carbon (analog 3b) resulted in a complete loss of growth inhibition, indicating a significant regiospecific requirement for this substituent. However, in the N-benzyl substituted indole-2-iminothiazolidin-4-one series (3g-o), both the 5- and 6-carbomethoxyindole analogs 3o and 3m exhibited growth inhibition against colon KM12 and CNS U251 cells, although these analogs contained a para-carbomethoxy-N-benzyl moiety rather that a para-cyano-N-benzyl moiety. In addition, unlike 3m, analog 3o was active against colon HCT-116 cells and lung NCI-H460 cells. Interestingly, the presence of a 5-indolic halogeno substituent (Cl or Br) and an indolic N-para-fluorobenzyl or N-ortho-fluorobenzyl moiety in the indole-2-iminothiazolidin-4-one series afforded compounds 3i, 3j, and 3k with growth inhibitory activity against colon HCT-116 cells. Analog 3k was also active against melanoma LOX IMVI cells. Analog 3i exhibited the best growth inhibitory properties in this series.

The two most active compounds (3a and 3i) from the preliminary 60 cell screen were evaluated in five dose-response studies for their in vitro cytotoxic effects on growth parameters against each of the 60 human tumor cell lines. Dose-response curves were created by plotting cytotoxic effect against the log10 of the drug concentration for each cell line. Cytotoxic effects of each compound were determined as GI50, and LC50 values, which represent the molar drug concentration required to cause 50% growth inhibition, and the concentration that kills 50% of the cells, respectively. The results are presented in Table 2.

Table 2.

Antitumor activity (GI50/ μM)a and toxicity (LC50/ μM)b data of compounds selected for 5 dose studies for the NCI 60-cell lines screen

Panel/cell line Compound 3a Compound 3i

GI50 LC50 GI50 LC50
Leukemia Cancer
CCRF-CEM 3.06 >100 >100 >100
HL-60(TB) 2.54 >100 >100 >100
K-562 0.97 >100 77.6 >100
MOLT-4 1.38 >100 >100 >100
RPMI-8226 3.61 >100 >100 >100
Non-Small Cell Lung Cancer
A549/ATCC 4.44 >100 0.77 >100
EKVX 4.22 >100 >100 >100
HOP-62 3.58 73.0 >100 >100
HOP-92 na na >100
NCI-H226 5.94 >100 80.7 >100
NCI-H23 4.07 >100 60.1 >100
NCI-H322M 0.72 >100 71.0 >100
NCI-H460 2.91 >100 >100 >100
NCI-H522 na na 11.0 >100
Colon Cancer
COLO 205 3.16 >100 >100 >100
HCC-2998 2.43 85.0 >100 >100
HCT-116 1.21 >100 5.41 >100
HCT-15 na na >100 >100
HT29 5.99 >100 20.8 >100
KM12 3.73 >100 7.49 >100
SW-620 2.27 >100 38.3 >100
CNS Cancer
SF-268 4.22 >100 32.0 >100
SF-295 3.09 >100 >100 >100
SF-539 2.39 >100 4.40 >100
SNB-19 3.77 >100 >100 >100
SNB-75 4.60 >100 2.47 >100
U-251 2.03 59.1 2.94 >100
Melanoma Cancer
LOX IMVI 1.43 >100 2.32 >100
MALME-3M 2.01 >100 23.5 >100
M14 1.43 >100 57.2 >100
MDA-MB-435 2.76 >100 32.4 >100
SK-MEL-2 0.30 30.6 >100 >100
SK-MEL-28 3.79 >100 >100 >100
SK-MEL-5 3.25 >100 >100 >100
UACC-257 4.20 >100 0.013 0.30
UACC62 1.27 51.0 >100 >100
Ovarian Cancer
IGR-OV1 0.66 >100 3.02 >100
OVCAR-3 2.05 >100 >100 30.1
OVCAR-4 4.13 >100 2.49 >100
OVCAR-5 5.51 >100 >100 >100
OVCAR-8 3.75 >100 0.019 >100
NCI/ADR-RES >100 >100 >100 >100
SK-OV-3 0.86 79.8 >100 >100
Renal Cancer
786-0 2.36 >100 37.4 >100
A498 0.55 >100 31.5 >100
ACHN 2.08 >100 >100 >100
CAKI-1 2.74 >100 >100 >100
RXF 393 0.58 >100 1.62 >100
SN12C 2.80 >100 >100 >100
TK-10 3.87 >100 5.64 >100
UO-31 2.70 >100 >100 >100
Prostate Cancer
PC-3 2.44 >100 23.6 >100
DU-145 na na 5.24 >100
Breast Cancer
MCF7 3.55 >100 >100 >100
MDA-MB-231/ATCC 3.32 >100 6.45 >100
HS 578T 0.97 >100 3.67 >100
BT-549 1.24 >100 98.8 >100
T-47D 1.50 >100 >100 >100
MDA-MB-468 4.14 >100 >100 >100

NA: Not analyzed

a

GI50: 50% Growth inhibition, concentration of drug resulting in a 50% reduction in net protein increase compared with control cells.

b

LC50: Lethal concentration, concentration of drug lethal to 50% of cells.

Compound 3i exhibited growth inhibitory properties against 52% of all cancer cell lines in the panel, with GI50 values in the range of 0.19-98.8 µM. (Table 2). Good growth inhibitory activity was observed against UACC-257 melanoma (GI50=13.3 nM), OVCAR-8 ovarian cancer (GI50=19.5 nM), and A549/ATCC non-small cell lung cancer (GI50=774 nM) cell lines, and moderate growth inhibition was observed against RXF 393 renal cancer (GI50=1.62 µM), LOX IMVI melanoma (GI50=2.32 µM), SNB-75 and U251 CNS cancer (GI50=2.47 µM and 2.94 µM respectively), and OVCAR-4 ovarian cancer (GI50=2.49 µM) cell lines.

Compound 3a exhibited growth inhibitory properties against 98% of all cancer cell lines in the panel, with GI50 values in the range of 0.30-6 µM (Table 2). Compound 3a exhibited good growth inhibitory activity against SK-MEL-2 melanoma cell lines (GI50=307 nM; LC50=30.6 µM), A498 (GI50=557 nM; LC50=>100 µM) and RXF 393 renal cancer (GI50=585 nM; LC50=>100 µM), IGROV1 and SK-OV-3 ovarian cancer (GI50=667 nM and 866 nM, respectively), NCI-H322M non-small cell lung cancer (GI50=721 nm, LC50=>100), HS 578T breast cancer (GI50=971 nM; LC50=>100 µM), and K-562 leukemia cell lines (GI50=972 nM; LC50=>100 µM), and showed moderate growth inhibitory activity against HCT-116 colon cancer (GI50=1.21 µM), BT-549 and T-47D breast cancer (GI50=1.24 µM, and 1.50 µM respectively), UACC-62, LOX IMVI and M14 melanoma (GI50=1.27 µM, 1.43 µM and 1.43 µM respectively), and MOLT-4 leukemia (GI50= 1.38) cell lines.

Of particular significance was the observation that the introduction of an indolic 6-carboxymethyl group and an N-para-cyanobenzyl moiety afforded an analog (3a) which exhibited effective growth inhibition in all but one of the cancer cell lines tested. In addition, in the 2-iminothiazolidin-4-one series of compounds, the 5-chloro-(p-fluoro-N-benzyl)indole analog (3i) exhibited very potent growth inhibition of UACC-257 melanoma and OVCAR-8 ovarian cancer cell lines, affording GI50 values of 13.3 nM and 19.5 nM, respectively.

In conclusion, a series of novel substituted (Z)-methyl-1-benzyl-3-((2,5-dioxoimidazolidin-4-ylidene)methyl)-1H-indole carboxylates (3a-f) and (Z)-5-((1-benzyl-1H-indol-3-yl)methylene)thiazolidine-2,4-diones (3g-o) have been synthesized and evaluated for their anticancer activity against a panel of 60 human tumor cell lines. Two analogs, (Z)-methyl-1-(4-cyanobenzyl)-3-((2,5-dioxoimidazolidin-4-ylidene)methyl)-1H-indole-6-carboxylate (3a) and (Z)-5-((5-chloro-1-(4-fluoro-benzyl)-1H-indol-3-yl)methylene)-2-iminothiazolidin-4-one (3i) emerged as useful lead compounds for further structural optimization as novel anticancer agents.

Acknowledgement

We are grateful to the NCI/NIH for their financial support under grant number CA 140409, and to the NCI Developmental Therapeutic Program (DTP) for screening data.

Footnotes

12

Analytical data for compound 3a. MF: C22H16N4O4, mp: >300 0C, 1H NMR (300 MHZ, DMSO-d6): δ 3.82 (s, 3H, OCH3), 5.68 (s, 2H, CH2), 6.71 (s, 1H, CH), 7.38-7.40 (d, J=8.1Hz, 2H, Ar-H), 7.72-7.93 (m, 4H, Ar-H), 8.13 (s, 1H, Ar-H), 8.45 (s, 1H, Ar-H), 10.27 (bs, 1H, NH), 11.15 (bs, 1H, NH) ppm; 13C NMR (75 MHz, DMSO-d6): δ 50.00, 52.78, 100.55, 109.65, 111.12, 112.99, 119.26, 121.84, 124.58, 125.76, 128.45 (2C), 131.55, 133.34 (2C), 133.87, 135.66, 143.56, 155.93, 161.86, 165.79, 167.29 ppm. Analytical data for compound 3i. M.F: C19H13ClFN3OS, mp: >300 0C, 1H NMR (300 MHz, DMSO-d6): δ 5.55 (s, 2H, CH2), 7.14-7.33 (m, 5H, Ar-H & CH), 7.57-7.58 (d, 1H, J=5.4Hz, Ar-H), 7.81 (s, 1H, Ar-H), 7.85 (s, 1H, Ar-H), 7.95 (s, 1H, C2-H), 9.00 (bs, 1H, NH), 9.24 (bs, 1H, NH) ppm; 13C NMR (75 MHz, DMSO-d6): δ 49.66, 111.29, 113.74, 114.45, 116.06, 116.33, 120.81, 121.98, 125.34, 126.24, 129.74, 130.02, 131.53, 133.84, 135.41, 160.54, 163.77, 174.96, 181.07 ppm.

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