Abstract
The diverse roles of protein kinase C-δ (PKCδ) in cellular growth, survival, and injury have been attributed to stimulus-specific differences in PKCδ signaling responses. PKCδ exerts membrane-delimited actions in cells activated by agonists that stimulate phosphoinositide hydrolysis. PKCδ is released from membranes as a Tyr313-phosphorylated enzyme that displays a high level of lipid-independent activity and altered substrate specificity during oxidative stress. This study identifies an interaction between PKCδ's Tyr313-phosphorylated hinge region and its phosphotyrosine-binding C2 domain that controls PKCδ's enzymology indirectly by decreasing phosphorylation in the kinase domain ATP-positioning loop at Ser359. We show that wild-type (WT) PKCδ displays a strong preference for substrates with serine as the phosphoacceptor residue at the active site when it harbors phosphomimetic or bulky substitutions at Ser359. In contrast, PKCδ-S359A displays lipid-independent activity toward substrates with either a serine or threonine as the phosphoacceptor residue. Additional studies in cardiomyocytes show that oxidative stress decreases Ser359 phosphorylation on native PKCδ and that PKCδ-S359A overexpression increases basal levels of phosphorylation on substrates with both phosphoacceptor site serine and threonine residues. Collectively, these studies identify a C2 domain-pTyr313 docking interaction that controls ATP-positioning loop phosphorylation as a novel, dynamically regulated, and physiologically relevant structural determinant of PKCδ catalytic activity.
INTRODUCTION
Protein kinase C-δ (PKCδ) is a serine/threonine kinase that plays a key role in signal transduction pathways that control a wide range of cellular responses. PKCδ contains a highly conserved C-terminal catalytic domain and N-terminal regulatory C1 and C2 domains. The C1 domain binds lipids and anchors full-length PKCδ to membranes. The functional role of the C2 domain has remained more elusive. While C2 domains of conventional PKC (cPKC) isoforms function as calcium-regulated membrane-targeting modules, the PKCδ C2 domain is a topological variant that does not coordinate calcium or bind lipids (1). Rather, it has been characterized as a protein-protein interaction motif (2, 3), with recent evidence that the PKCδ-C2 domain is a phosphotyrosine (pY) binding motif that binds the consensus sequence (Y/F)-(S/A)-(V/I)-pY-(Q/R)-X-(Y/F) (4).
PKCδ is allosterically activated by lipids (diacylglycerol [DAG] or phorbol esters such as phorbol 12-myristate 13-acetate [PMA]) that bind to the C1 domain. PKCδ also is dynamically regulated as a result of tyrosine phosphorylation by Src (5, 6). We previously showed that oxidative stress releases PKCδ from membranes, activates Src, and induces a global increase in PKCδ phosphorylation at Tyr313 and Tyr334 in both soluble and particulate subcellular compartments (7). These residues in the V3 hinge region of human PKCδ correspond to Tyr311 and Tyr332 in rodent PKCδ. The nomenclature for human PKCδ is used below. While PMA does not increase Src activity, it delivers PKCδ in an active conformation to Src-enriched caveolar membranes where a low level of basal Src activity is sufficient to promote PKCδ phosphorylation at Tyr313 but not Tyr334 (8). Since PKCδ is phosphorylated by Src in vitro at both Tyr313 and Tyr334 (9), a mechanism that might account for the selective PMA-dependent PKCδ phosphorylation at Tyr313 but not Tyr334 has never been obvious.
Stimulus-induced increases in PKCδ-Tyr313 phosphorylation have been implicated in several PKCδ-dependent cellular responses (10, 11). We previously showed that Tyr313 phosphorylation influences PKCδ activity toward cardiac troponin I (cTnI, the inhibitory subunit of the troponin complex and a physiologically important PKCδ substrate in cardiomyocytes) (9). cTnI contains several phosphorylation clusters that exert distinct effects on cardiac contraction. PKCδ phosphorylates cTnI at Ser23/Ser24 when allosterically activated by phosphatidylserine (PS)/PMA; studies in detergent-extracted single cardiomyocytes link cTnI-Ser23/Ser24 phosphorylation to a decrease in tension at submaximum, but not maximum, calcium concentrations. When PKCδ is tyrosine phosphorylated by Src, PKCδ acquires cTnI-Thr144 kinase activity: it phosphorylates cTnI at both Ser23/Ser24 and Thr144, leading to a decrease in maximum tension and cross-bridge kinetics (i.e., a different functional response). Additional studies showing that the Src-dependent acquisition of cTnI-Thr144 kinase activity is completely abrogated by a Y313F substitution implicates Tyr313 phosphorylation as the mechanisms underlying the Src-dependent increase in PKCδ activity (9).
The structural basis for Tyr313 phosphorylation-dependent changes in PKCδ's enzymology is not obvious. This study builds upon the intriguing observation that Tyr313 resides in a PKCδ-C2 domain consensus-binding motif (VGI-Y313-QGF) (4) to show that the C2 domain interacts with the Tyr313-phosphorylated V3 region and that this interaction controls PKCδ catalytic activity indirectly by regulating phosphorylation at Ser359, a novel phosphorylation site in the Gly-rich ATP-positioning loop (G loop, also known as the phosphate binding P loop) of the kinase domain.
MATERIALS AND METHODS
Materials.
PKCδ and PKCδ-pTyr334 antibodies were from Santa Cruz Biotechnology. Mouse monoclonal anti-green fluorescent protein (anti-GFP) 3E6 was from Invitrogen. Anti-Flag was from Sigma. All other antibodies were from Cell Signaling Technology. The specificity of all anti-PKCδ antibodies (including phosphorylation site-specific antibodies that specifically recognize phosphorylation at Thr507, Tyr313, and Tyr334) has been validated previously (9). Src was from Invitrogen-Life Technologies. CREBtide and other peptide substrates were from Anaspec. PMA was from Sigma. Other chemicals were reagent grade.
Plasmids and cell lines.
Mutant constructs of the PKCδ-enhanced GFP (EGFP) expression plasmid (human sequence with EGFP fused to its C terminus) (9) were generated by PCR and validated by sequencing. N-terminal Flag-tagged versions of PKCδ, PKCδ-ΔC2 (where ΔC2 represents a C2 deletion of amino acids [aa] 1 to 123 [Δ1-123]), and PKCδ-S359A also were generated and inserted into pcDNA3.1. All results shown in Fig. 2 and 3 with EGFP-tagged enzymes were replicated with Flag-tagged enzymes. Expression vectors were introduced into HEK293 cells (maintained in Dulbecco's modified Eagle's medium [DMEM] with 10% fetal bovine serum [FBS]) using Effectene transfection reagent (Qiagen) according to the manufacturer's instructions. Cells were lysed after 24 h in homogenization buffer containing 20 mM Tris-Cl (pH 7.5), 0.05 mM EDTA, 0.5 mM dithiothreitol (DTT), 0.2% Triton X-100, 5 μg/ml aprotinin, 5 μg/ml leupeptin, 5 μg/ml benzamidine, 1 mM phenylmethylsulfonyl fluoride, and 5 μM pepstatin A.
Cardiomyocytes were isolated from the hearts of 2-day-old Wistar rats and infected with adenoviral vectors that drive expression of wild-type PKC-δ (WT-PKCδ) or PKCδ-S359A according to methods published previously (12). Total cell lysates and fractions enriched in myofibrillar proteins were prepared according standard methods described in previous publications (7, 13). The study was approved by Columbia University's Institutional Animal Care and Use Committee.
Preparation of caveolar membranes.
Caveolar membrane proteins were isolated according to a detergent-free purification scheme that was described previously (14).
IVKAs and Western blotting.
In Vitro kinase assays (IVKAs) were performed with PKCδ immunoprecipitated with anti-GFP or anti-Flag from 150 μg of starting cell extract according to methods described previously (9). Incubations were performed for 30 min at 30°C in 110 μl of reaction buffer containing 30 mM Tris-Cl, pH 7.5, 5.45 mM MgCl2, 0.65 mM EDTA, 0.65 mM EGTA, 0.1 mM DTT, 1.09 mM sodium orthovanadate, 0.1 μM calyculin, 0.55 μM protein kinase inhibitor (PKI), 217 mM NaCl, 3.6% glycerol, 89 μg/ml phosphatidylserine plus 175 nM PMA, and [γ-32P]ATP (10 μCi, 66 μM) with 4 μg of Tn complex (consisting of equimolar cTnI, cTnT, and cTnC) as the substrate. Immunoblotting on lysates or immunoprecipitated PKCδ was according to methods described previously or to the manufacturer's instructions. In each figure, each panel represents the results from a single gel (exposed for a uniform duration); detection was with enhanced chemiluminescence. 32P incorporation was quantified by phosphorimager, and PKCδ phosphorylation was normalized to PKCδ protein levels.
Peptide kinase assays were carried out in a similar manner in 200 μl of a reaction mixture containing 26 mM Tris, pH 7.5, 5 mM MgCl2, 0.6 mM EGTA, 0.6 mM EDTA, 0.5 μM PKI, 10 μM protein phosphatase 1 (PP1), 0.25 mM DTT, 89 μg/ml phosphatidylserine plus 175 nM PMA, and 50 μM peptide substrate, as indicated in the legend of Fig. 6. Reactions were initiated by the addition [γ-32P]ATP (10 μCi, 66 μM) and were performed in quadruplicate at 30°C for 15 min. Assays were terminated by placing samples on ice, which was followed by centrifugation at 1,500 × g for 10 min at 4°C. Forty microliters of each supernatant was spotted onto phosphocellulose filter papers (P-81), which were dropped immediately into water and washed (five times for 5 min), and radioactivity counts were determined.
Multiple-reaction monitoring (MRM) phosphorylation of PKCδ.
WT-PKCδ and PKCδ-ΔC2 enzymes were heterologously overexpressed in HEK293 cells, immunoprecipitated for IVKAs, and then subjected to in-gel digestion as described previously (15). Briefly, WT-PKCδ and PKCδ-ΔC2 bands separated by SDS-PAGE were excised, cut into 1-mm pieces, and washed three times with 50% acetonitrile–25 mM ammonium bicarbonate for 15 min with shaking. Gel pieces were incubated with 25 mM ammonium bicarbonate plus 10 mM dithiothreitol for 60 min at 55°C, washed with acetonitrile (ACN), and then incubated with 25 mM ammonium bicarbonate plus 55 mM iodoacetamide (freshly made) for 30 min in the dark. Gel pieces were then washed with ACN, dried, rehydrated with 10 ng/μl trypsin (sequencing grade; Promega) in 25 mM ammonium bicarbonate, and then placed on ice for 30 min. Excess trypsin was removed, and then 20 μl of 25 mM ammonium bicarbonate was added. Samples were digested at 37°C for 18 h. The liquid was transferred to a clean tube. The peptides were extracted twice using 50% ACN–0.1% trifluoroacetic acid (TFA) for 20 min at 25°C with shaking. The final peptide mixture was subjected to C18 reverse-phase chromatography in C18 ZipTips (Millipore) using 0.1% TFA. The peptides were then eluted two times with 20 μl of 70% ACN–0.1% TFA and 95% ACN–0.1% TFA. The combined solution was dried using a SpeedVac vacuum centrifuge (Thermo Electron) and frozen at −80°C until analysis.
MRM assays were developed, optimized, and validated using a nano-liquid chromatography-tandem mass spectrometry (nano-LC-MS/MS) system, the 4000 QTRAP hybrid triple-quadrupole/linear ion trap mass spectrometer (AB Sciex). Peptides obtained from the in-gel digestion of PKCδ proteins were reconstituted in 20 μl of 0.1% formic acid. Peptides were separated by an Eksigent Tempo nano-LC system (Eksigent Technology) onto a BioBasic C18 reverse-phase PicoFrit column (300-Å pore size, 5-μm particle size, 75-μm inner diameter by 10-cm length, 15-μm tip; New Objective). Peptides were eluted in a 36-min AB linear gradient from 5 to 40% mobile phase B (mobile phase A, 2% [vol/vol] ACN containing 0.1% [vol/vol] formic acid; mobile phase B, 98% [vol/vol] ACN containing 0.1% [vol/vol] formic acid) at a 500 nl/min flow rate on the 4000 QTRAP MS system, with the NanoSpray source spray head coupled to a distal coated PicoTip fused silica spray tip (360-μm outside diameter, 75-μm inside diameter, 15-μm emitter orifice diameter; New Objective). Samples were analyzed using the following settings: curtain gas (CUR), 15; collision gas (CAD), high; ion spray voltage (IS), 2.5 kV; ion source gas 1 (GS1), 25; ion source gas 2 (GS2), 0; resolution Q1 and Q3, unit; heater interface temperature, 150°C. Each sample was run in triplicate. Peak detection and quantification of peak area were determined with Multiquant software, version 2.0, and inspected manually to ensure correct peak identification and quantification. Quantification of PKCδ phosphosites was carried out using a ratio of the peak area to gel band densitometry.
FRET sensor data.
The C2 domain of PKCδ (123 aa) was cloned from full-length human PKCδ cDNA. All constructs contain an N-terminal Flag tag immediately followed by mCitrine. In sequence behind the mCitrine are the C2 domain of PKCδ, 10-nm ER/K α-helix linker (16), a tobacco etch virus (TEV) protease site (ENLYFQ), mCerulean, and a 13-amino-acid peptide sequence containing a Tyr residue that when phosphorylated corresponds to a C2 domain consensus binding site. Fluorescent resonance energy transfer (FRET) sensors were generated with either the optimal binding sequence MALYSIYQPYVFA (4), the native PKCδ SEPVGIY313QGFEKK sequence, or these sequences with Tyr→Phe (in boldface) substitutions (MALYSIFQPYVFA and SEPVGIFQGFEKK) as controls. All domains and fluorophores are linked with three to four Gly-Ser-Gly repeats to allow rotational flexibility and are cloned between unique restriction sites. A C2 domain H62D mutation was generated by site-directed mutagenesis (QuikChange; Stratagene). These constructs were cloned between unique restriction sites in pBiex-1 vector and used for expression in Sf9 cells. Proteins were purified as described previously (17). FRET spectra for recombinant proteins were acquired on a FluoroMax-4 fluorometer (Horiba Scientific). Samples were excited at 430 nm (spectral band pass [bp 8 nm]), and emission was scanned from 450 to 650 nm (bp 4 nm). All samples were suspended in a buffer composed of 50 mM Tris-HCl, 10 mM MgCl2, 10% glycerol, and 2.5 mM DTT. Recombinant Src kinase was added to the reaction samples and incubated at 30°C for 30 min before spectra were taken. The samples also contain 0.05 mg/ml bovine serum albumin (BSA) to limit nonspecific surface adsorption of sensor proteins.
RESULTS
A FRET-based sensor detects a C2 domain interaction with a pTyr313-bearing peptide.
Since traditional bimolecular approaches are unlikely to be an effective approach to detect a cis interaction between the C2 domain and the pTyr313 motif (which is predicted to be facilitated by the tethering of the two domains within full-length PKCδ), we generated FRET-based sensors consisting of a single polypeptide with (N to C terminus) the C2 domain, mCerulean (as FRET donor), an ER/K linker (18), a 13-residue peptide based upon either a previously described optimal pTyr binding motif (4) or sequence flanking Tyr313 in PKCδ, and mCitrine (as a FRET acceptor). These sensors are designed to primarily report on the strength of the interaction between the C2 domain and the peptide (higher FRET indicates a stronger interaction) (Fig. 1A) (16). Sensors were purified and subjected to in vitro kinase assays with recombinant Src. Figure 1B and C show that the FRET signals for sensors bearing either the optimal pTyr binding motif or the Tyr313-bearing peptide increase as a result of in vitro phosphorylation by Src. Two sets of control sensors were generated to establish the specificity of the FRET signals (Fig. 1C). First, studies with sensors containing Tyr→Phe substitutions at each peptide's phosphorylation site establish that the increase in FRET signal is due to phosphorylation at the designated tyrosine residue in the peptide. Second, studies with sensors containing H62D substitutions in the C2 domain pTyr binding pocket (that disrupts the C2 domain-pTyr interaction) (schematic in Fig. 1D) (4) point to a phosphorylation-dependent interaction with the C2 domain. These results indicate that the Src-dependent increases in FRET are due to C2 domain interactions with Tyr-bearing peptides, providing direct evidence for an interaction between the C2 domain and the pTyr313 motif in the V3 hinge of PKCδ.
The C2 domain is required for in vivo PMA-dependent PKCδ-Tyr313 phosphorylation.
We used a PKCδ-C2 domain deletion construct (PKCδ-ΔC2) to examine the consequences of C2 domain-dependent interactions in a cellular context. Figure 2A shows that WT-PKCδ and PKCδ-ΔC2 are expressed at similar levels in HEK293 cells and that both enzymes undergo similar maturational phosphorylations at the activation loop (Thr507) and C-terminal (Ser645 and Ser664) phosphorylation sites. These “priming” site phosphorylations are stable modifications that are not altered by PMA or H2O2. H2O2 and pervanadate promote WT-PKCδ and PKCδ-ΔC2 phosphorylation at Tyr313 and Tyr334 (Fig. 2A and B). In each case, Tyr313 and Tyr334 phosphorylation is via an Src-dependent mechanism that is inhibited by PP1 (7). In contrast, PMA induces an Src-dependent increase in WT-PKCδ phosphorylation at Tyr313 but not at Tyr334. PMA does not increase PKCδ-ΔC2 phosphorylation at Tyr313 (Fig. 2A and B).
Control studies indicate that the effect of the C2 domain deletion to prevent PMA-dependent Tyr313 phosphorylation is not due to a defect in PKCδ targeting to Src-enriched caveolar membranes. Figure 2C shows that WT-PKCδ and PKCδ-ΔC2 both translocate to the caveolar membrane fraction. These results indicate that some other mechanism must account for the selective defect in PMA-dependent PKCδ-ΔC2-Tyr313 phosphorylation. Therefore, we considered whether a C2 domain deletion disrupts the docking interaction that protects the phosphorylation site at Tyr313 (but not Tyr334) from dephosphorylation by cellular phosphatases. This mechanism could account for the puzzling observation that Src phosphorylates PKCδ in vitro at both Tyr313 and Tyr334 although PKCδ is phosphorylated via an Src-dependent mechanism at Tyr313 and not Tyr334 in PMA-treated cells. Indeed, Fig. 2D shows that a PKCδ H62D substitution in the C2 domain pY binding site (4) completely abrogates PMA-dependent Tyr313 phosphorylation, whereas Tyr313 phosphorylation is not influenced by a Y64F substitution at an adjacent site in the C2 domain that does not contribute to pY binding.
PKCδ-ΔC2 displays a high level of cTnI-Thr144 and cTnT kinase activity that is not influenced by Src.
We performed in vitro kinase assays (IVKAs) without and with Src in buffers containing [γ32P]ATP, PS/PMA, and cardiac troponin (cTn) complex (consisting of equimolar cTnI, cardiac troponin T [cTnT], and cardiac troponin C [cTnC] as the substrate) to determine whether a C2 domain deletion alters PKCδ's in vitro enzymology. Figure 3 shows that WT-PKCδ executes a time-dependent autophosphorylation reaction. This is tracked as an increase in 32P incorporation, which provides an integrated measure of autophosphorylation and (where specified) PKCδ tyrosine phosphorylation by Src (Fig. 3); a representative autoradiogram is depicted on the left, with the results of three separate experiments quantified on the right. PKCδ autophosphorylation also is detected by immunoblot analysis with an anti-pTXR motif phosphorylation site-specific antibody (PSSA) that specifically recognizes one of several autophosphorylation sites on PKCδ at Thr295 (19). It is important to note that Thr295 autophosphorylation is tracked in this study solely as a convenient readout of PKCδ autocatalytic activity. Studies to date show that a T295A substitution (in the vicinity of Tyr313) leads to a defect in Src-dependent PKCδ-Tyr313 phosphorylation (and therefore prevents the Src-dependent increase in PKCδ catalytic activity) but that a T295A substitution does not otherwise grossly influence PKCδ catalytic activity. Insofar as this study focuses on mechanisms that activate PKCδ downstream from Src (that bypass the requirement for phosphorylation at Tyr313) (see below), a regulatory role for Thr295 autophosphorylation is unlikely and was not considered. Figure 3 shows that WT-PKCδ executes a time-dependent autophosphorylation and that autophosphorylation (quantified as 32P incorporation) is enhanced by Src, consistent with previous evidence that Src enhances PKCδ's autocatalytic activity.
The kinetics of PKCδ phosphorylation of cTnI and cTnT were examined in parallel (note that cTnC is not a substrate for PKC). Figure 3 shows that the time course for WT-PKCδ phosphorylation of individual sites on cTnI is strikingly different. WT-PKCδ phosphorylates cTnI at Ser23/Ser24 very rapidly. This reaction reaches a maximal level at early time points, well in advance of WT-PKCδ-Thr295 autophosphorylation or WT-PKCδ-Tyr313 phosphorylation by Src. In contrast, WT-PKCδ phosphorylation of cTnI at Thr144 is detected following more prolonged incubations (30 to 60 min) exclusively in assays with Src. The anti-pTXR motif PSSA also exposes an Src-dependent increase in PKCδ phosphorylation of cTnT; cTnT contains three TXR motifs (in boldface) in PKC phosphorylation clusters at T194ERKS198GKRQT203ER and KVT284GR. Importantly, we previously showed that the Src-dependent acquisition of cTnI-Thr144 kinase activity is abrogated by a Y313F substitution in PKCδ (9); a Y313F substitution also abrogates the Src-dependent increase in TXR motif phosphorylation on cTnT (data not shown).
A similar kinetic analysis of the in vitro kinase activity of PKCδ-ΔC2 shows the following. (i) PKCδ-ΔC2 exhibits a time-dependent increase in autophosphorylation, detected as an increase in 32P incorporation and phosphorylation at Thr295. Quantification, based upon 32P incorporation, shows that PKCδ-ΔC2 autophosphorylates to a higher level than WT-PKCδ; PKCδ-ΔC2 autophosphorylation is not influenced by Src. (ii) PKCδ-ΔC2 phosphorylates cTnI at Ser23/Ser24 but, unlike WT-PKCδ, displays a high level of Src-independent cTnI-Thr144 and cTnT-TXR motif activity. These results suggest that the C2 domain functions to limit PKCδ-dependent cTnI-Thr144 and cTnT-TXR motif phosphorylation.
The C2 domain controls phosphorylation of the ATP-positioning loop at Ser359.
WT-PKCδ and PKCδ-ΔC2 were subjected to IVKAs and then targeted multiple-reaction monitoring (MRM)–mass spectrometry to determine whether PKCδ-ΔC2's altered enzymology is attributable to a change in phosphorylation. We identified a novel phosphorylation site at Ser359 in the highly conserved Gly-rich ATP-positioning loop (G loop, also known as the phosphate positioning P loop) in the small lobe of the kinase domain (see Fig. S1 in the supplemental material). Quantification (peak areas) showed that the Ser359-phosphorylated peptide is detected by MRM in tryptic digests from WT-PKCδ but that it is not detected in digests from PKCδ-ΔC2 (see Fig. S1A, B, E, and F in the supplemental material). The precise stoichiometry of phosphorylation at this site could not be assessed since unphosphorylated Ser359 peptide ionizes poorly in the MS instrument; it is detected (elution time, ∼16 min), but the levels are below the lower limit of quantification.
We developed an anti-PKCδ-pSer359 PSSA as a separate strategy to track PKCδ G-loop phosphorylation. Figure 3B shows the validation of this reagent; the anti-PKCδ-pSer359 PSSA recognizes WT-PKCδ but not a PKCδ-S359A mutant. Western blots using this reagent show that Ser359 phosphorylation is detected on WT-PKCδ but not on the PKCδ-ΔC2 mutant (Fig. 3B). Separate experiments showed that WT-PKCδ or PKCδ-ΔC2 phosphorylation at Ser359 does not grossly change during the IVKA (data not shown). This contrasts with phosphorylation at Thr295, which increases during IVKAs on both WT-PKCδ and PKCδ-ΔC2 (Fig. 3A). The Thr295-phosphorylated peptide also was detected in the MRM studies, where the quantification showed a 37% higher level of the Thr295-phosphorylated peptide in tryptic digests from PKCδ-ΔC2 than in the digest from WT-PKCδ (see Fig. S1A to D in the supplemental material).
The C2 domain regulates PKCδ catalytic activity indirectly by controlling Ser359 phosphorylation.
PKCδ mutants harboring single-residue substitutions at position 359 (either on the WT-PKCδ or PKCδ-ΔC2 backbone) were subjected to IVKAs to examine their autocatalytic and Tn kinase activities. Preliminary studies showed that Ser359 substitutions do not grossly alter PKCδ expression, priming site (Thr507, Ser645, and Ser664) phosphorylation, or cTnI-Ser23/Ser24 kinase activity (data not shown), suggesting that the PKCδ G loop is a relatively flexible structure that accommodates a range of amino acid substitutions at position 359.
Figure 4 shows that WT-PKCδ activity is strictly lipid dependent, but PKCδ-S359A possesses a considerable amount of lipid-independent autocatalytic activity, detected as a high level of lipid-independent autophosphorylation at Thr295 (Fig. 4A) and 32P incorporation (Fig. 4B). The S359A substitution also increases lipid-independent cTnI-Ser23/Ser24 kinase activity (relative to WT-PKCδ), and it confers Src-independent cTnI-Thr144 and cTnT-TXR kinase activity. PS/PMA treatment results in further increases in PKCδ-S359A activities.
PKCδ-S359E also possesses a modest level of lipid-independent autocatalytic activity (detected as increased Thr295 autophosphorylation and 32P incorporation into the enzyme) (Fig. 4A and B). The observation that S→E and S→A substitutions both increase lipid-independent PKCδ autocatalytic activity suggests that an electrostatic interaction involving the Ser359 hydroxyl group (rather than Ser359 phosphorylation) stabilizes the inactive conformation of the enzyme. However, S359A and S359E substitutions exert very different effects on Tn phosphorylation. PKCδ-S359E retains wild-type cTnI-Ser23/Ser24 kinase activity, but it does not phosphorylate cTnI at Thr144 or cTnT at TXR motifs (even when it is Tyr313 phosphorylated by Src). While a PKCδ-S359E-dependent increase in 32P incorporation into cTnT was detected in assays with Src (Fig. 4B), this was mapped to a different cTnT phosphorylation site that is recognized by an anti-PKC substrate motif PSSA (that recognizes pS flanked by R or K at −2 and +2 positions) (Fig. 4A); cTnT's PKC phosphorylation cluster contains a site (T194ERKS198GKRQT203ER; the phosphorylation site is underlined, and the boldface R at the −2 position and K at the +2 position relative to the phosphorylation site show that this conforms to the described PKC consensus motif) that conforms to this motif.
The antithetical effects of S359A and S359E substitutions on PKCδ's TXR kinase activity could suggest a role for a negative charge (e.g., phosphorylation) at this site. However, Fig. 4C shows that a position 359 bulky/uncharged Leu substitution also abrogates cTnI-Thr144 and cTnT-TXR motif phosphorylation, without disrupting PKCδ autocatalytic activity or cTnI-Ser23/Ser24 kinase activity. These results argue that the steric bulk of a position 359 phosphate group (rather than the negative charge) disrupts PKCδ activity toward cTnI-Thr144 and cTnT-TXR motifs.
We introduced an S359E substitution into the PKCδ-ΔC2 backbone to test whether the C2 domain controls PKCδ catalytic activity indirectly by regulating Ser359 phosphorylation. Figure 4D shows that PKCδ-ΔC2 and PKCδ-ΔC2-S359E display similar cTnI-Ser23/Ser24 kinase activities. PKCδ-ΔC2 (which is not detectably phosphorylated at Ser359) displays high levels of cTnI-Thr144 and cTnT-TXR motif activity. cTnI-Thr144 and cTnT-TXR motif phosphorylation is completely abrogated by an S359E substitution in the PKCδ-ΔC2 backbone.
These studies (summarized in Fig. 5) implicate Ser359 as a novel PKCδ phosphorylation site that plays a heretofore unrecognized role to control phosphorylation of TXR motifs on cTnI and cTnT (but not cTnI phosphorylation at Ser23/Ser24). However, these newer results also raise a question regarding the mechanism underlying our original observation that Src increases WT-PKCδ's in vitro TXR activity; Src-phosphorylated WT-PKCδ acquires TXR activity without any gross change in its Ser359 phosphorylation status in the IVKAs (an artificial context that does not include cellular phosphatases). The simplest, most parsimonious, explanation for this finding is that WT-PKCδ TXR activity arises from a pool of enzyme that is recovered without G-loop Ser359 phosphorylation. This formulation is consistent with (i) the MRM-MS studies that detected, but could not quantify, the unphosphorylated Ser359 peptide and (ii) the mutagenesis studies showing that TXR activity is completely abrogated by the phosphomimetic or bulky Ser359 substitutions, indicating that an unphosphorylated, or alanine substituted, Ser359 in the G loop is necessary for TXR activity. In fact, the data shown in Fig. 3 showing that WT-PKCδ displays a very low level of Src-independent TXR activity when incubations are pushed to very prolonged intervals suggest that TXR activity reflects both the fraction of total enzyme that is recovered without Ser359 phosphorylation and its overall catalytic activity and that Src increases WT-PKCδ's TXR activity by enhancing its catalytic activity (independent of any effect on Ser359 phosphorylation). We performed additional studies with the PKCδ-Y313F mutant enzyme (which prevents phosphorylation by Src but does not influence G-loop Ser359 phosphorylation) (see Fig. 8C) to test this hypothesis. The observation that a Y313F substitution decreases PKCδ autophosphorylation at Thr295 (53% ± 7% relative to WT-PKCδ; P < 0.05, n = 3) indicates that an Src-driven conformational change, which may or may not involve the C2 domain-pTyr313 docking interaction, contributes to the mechanism for maximal activation of WT-PKCδ.
An S359A substitution influences the phosphoacceptor preference of PKCδ.
While PKCδ is generally viewed as an Ser/Thr kinase, substrate sequence logos suggest a clear preference for substrates with an Ser at the phosphoacceptor site (P site). Of note, structural studies of PKA complexed with ATP and PKI (an inhibitor peptide that docks to the active site) place the Ser in the GKGSFG sequence at the tip of the G loop in close proximity to the P site on substrates (Fig. 6A). Our observation that an S359A substitution (at the tip of the G loop of PKCδ) selectively increases phosphorylation of TXR (Thr-directed) motifs on cTnI and cTnT provided a rationale to test whether posttranslational modifications (PTMs) at Ser359 specifically regulate substrate phosphorylation at Thr (but not Ser) residues. We compared WT-PKCδ and PKCδ-S359A activity toward short peptide substrates based upon the cTnI phosphorylation site at position 144 with either Thr or Ser at the P site. It is worth noting that IVKAs described in the previous sections tracked WT-PKCδ phosphorylation of proteins in the troponin complex; these assays are performed at limiting/submicromolar substrate concentrations since practical issues related to cost and protein insolubility preclude the use of higher concentrations of protein substrates. In contrast, peptide kinase assays are performed at a considerably higher substrate concentration (50 μM) and expose a low level of cTnI-Thr144 phosphorylation by PKCδ. However, Fig. 6B shows that WT-PKCδ displays a considerably higher level of activity toward the cTnI-Ser144 peptide. Moreover, the S359A substitution increases peptide kinase activity. PKCδ-S359A phosphorylates both cTnI-Thr144 and cTnI-Ser144 peptides; it does not discriminate between these peptides. Similar results were obtained in assays with peptides based upon the Ser133 phosphorylation site in CREB, which is flanked by a different phosphorylation motif (Fig. 6C). In this case, WT-PKCδ and PKCδ-S359A display high levels of activity toward the CREB-Ser133 peptide. An S133T substitution markedly decreases peptide phosphorylation by WT-PKCδ but not PKCδ-S359A. These results implicate PTMs at Ser359 in PKCδ's G loop as a mechanism that regulates PKCδ's P-site specificity.
G-loop regulation of PKCα and PKA activities.
The G-loop Ser359 phosphorylation site in PKCδ is highly conserved in other PKCs and in PKA (Fig. 7). Since there is recent evidence that this G-loop site is posttranslationally modified in PKCα and PKA (20, 21) and since the functional role of this site in PKCα and PKA remains uncertain, we examined whether G-loop substitutions influence PKCα or PKA catalytic activity. Figure 7B and C show that single-residue substitutions in the G-loops of PKCα (at Ser349) or PKA (at Ser53) do not influence enzyme expression or priming/activation loop phosphorylation. WT-PKCα displays a modest amount of activity toward cTnI-Ser23/Ser24 in assays with PS/PMA (Fig. 7B). The S349A substitution increases PKCα's lipid-dependent cTnI-Ser23/Ser24 kinase activity, without imparting activity toward cTnI-Thr144 or cTnT-TXR motifs (and it does not confer lipid-independent catalytic activity). Control studies performed in parallel show that a similar level of cTnI-Ser23/Ser24 phosphorylation by lipid-/Src-activated PKCδ is associated with considerable amounts of cTnI-Thr144 and cTnT-TXR activity. Figure 7C shows that an S53A substitution increases while an S53E substitution decreases cTnI-Ser23/Ser24 phosphorylation by PKA. WT and mutant PKA constructs do not phosphorylate TXR sites on cTnI or cTnT. Collectively, these studies implicate G-loop PTMs as general regulators of PKCδ, PKCα, and PKA activity. In each case, S→A substitutions increase and S→E substitutions decrease activity. However, the detailed nature of the regulatory control is kinase specific. The G-loop S→A substitution confers TXR motif activity on PKCδ but not on PKCα or PKA.
H2O2 decreases PKCδ-Ser359 phosphorylation in cardiomyocytes; PKCδ-S359A displays an activated phenotype in cardiomyocytes.
We examined whether PKCδ-Ser359 phosphorylation is regulated in cardiomyocytes. Figure 8A shows that endogenous PKCδ is recovered from cardiomyocytes as a Ser359-phosphorylated enzyme and that PKCδ-Ser359 phosphorylation decreases in association with the H2O2-dependent increase in PKCδ phosphorylation at Tyr313. PKCδ-pSer359 immunoreactivity is reduced by 74% ± 4% relative to levels in resting cardiomyocytes following treatment with 5 mM H2O2 (n = 4, P < 0.05). Figure 8B shows that the reciprocal H2O2-dependent changes in PKCδ-Tyr313 and Ser359 phosphorylation are associated with the acquisition of lipid-independent cTnI-Ser23/Ser24 and cTnI-Thr144 kinase activities. Figure 8C uses a heterologous overexpression strategy to establish a link between the H2O2-dependent changes in Tyr313 and Ser359 phosphorylation. Figure 8C shows that the H2O2-dependent decrease in Ser359 phosphorylation is abrogated by a Y313F substitution.
We used an overexpression strategy with WT-PKCδ and PKCδ-S359A followed by immunoblotting with the anti-PKC substrate PSSA (as a general screen for target protein phosphorylation), anti-pTXR (a specific screen for phosphorylation at Thr phosphoacceptor sites), and antibodies that recognize activating phosphorylations on protein kinase D (PKD, a PKCδ-activated effector) (22) to examine the functional importance of Ser359 in a cellular context. Immunoblotting studies on cell lysates show that WT-PKCδ or PKCδ-S359A overexpression leads to an increase in PMA-dependent responses (Fig. 8D). However, PKCδ-S359A uniquely acts as a constitutively activated enzyme to enhance (basal) anti-PKC substrate PSSA immunoreactivity and phosphorylation/activation of PKD (Fig. 8D). PKCδ-S359A overexpression also increases substrate phosphorylation at TXR motifs. However, pTXR motif immunoreactivity was detected on only a limited number of proteins in cell lysates. Therefore, we also assessed phosphorylation in the myofibrillar fraction. Figure 8D shows that WT-PKCδ and PKCδ-S359A overexpression leads to a marked increase in basal and PMA-dependent anti-PKC substrate PSSA immunoreactivity in the myofibrillar fraction: PKC substrate motif phosphorylation is higher in cardiomyocytes that overexpress PKCδ-S359A than in cardiomyocytes that overexpress WT-PKCδ. The myofibrillar fractions also contain considerable amounts of pTXR immunoreactivity. pTXR immunoreactivity (including on a band that comigrates with cTnT) is considerably higher in the myofibrillar fraction from cardiomyocytes that overexpress PKCδ-S359A than in WT-PKCδ.
DISCUSSION
PKCδ was originally described as a signaling kinase that mediates growth factor-dependent cellular responses. The original allosteric model of PKCδ activation focused on translocation events that deliver the enzyme in an active conformation to DAG-enriched membranes. This model assumes that the cellular actions of PKCδ are membrane delimited and that PKCδ's catalytic activity is an inherent property of the enzyme that is not altered by the activation process. However, subsequent studies exposed alternative lipid-independent mechanisms for PKCδ activation that result in the generation of distinct molecular forms of PKCδ with altered catalytic properties in various subcellular compartments (not just in DAG-enriched membranes). We previously reported that oxidative stress leads to the activation of Src and accumulation of a Tyr313-phosphorylated form of PKCδ with altered catalytic properties in cardiomyocytes (7, 9). This study identifies the mechanism that links Tyr313 phosphorylation to changes in catalytic activity by showing that the Tyr313-phosphorylated hinge region functions as a docking site for the pTyr binding C2 domain of PKCδ (schematized in Fig. 9).
We used a PKCδ-ΔC2 deletion mutant to examine the functional consequences of C2 domain-mediated docking interactions. First, we showed that full-length PKCδ phosphorylates cTnI-Thr144 and cTnT-TXR motifs when it is Tyr313 phosphorylated by Src. In contrast, PKCδ-ΔC2 possesses a high level of Src-independent cTnI-Thr144 and cTnT-TXR motif activity. These results suggest that the C2 domain functions as an autoinhibitory regulator of certain full-length PKCδ activities and that a docking interaction between the C2 domain and the Tyr313-phosphorylated hinge region induces a global conformational change that relieves this C2 domain-mediated autoinhibitory constraint. Second, we showed that the C2 domain regulates PKCδ activity by controlling phosphorylation at Ser359. WT-PKCδ displays a high level of Ser359 phosphorylation. Studies using two different experimental approaches (multiple-reaction monitoring–mass spectrometry and Western blotting with a PSSA) show that PKCδ-ΔC2 is recovered from cells without Ser359 phosphorylation, indicating that Ser359 phosphorylation is disrupted by the C2 domain deletion. Mutagenesis studies implicate this Ser359 phosphorylation defect as the mechanism underlying PKCδ-ΔC2's altered catalytic activity. These results suggest that the C2 domain in the inactive enzyme is positioned to protect Ser359 from cellular phosphatases and that a C2 domain deletion or a mechanism that displaces the C2 domain from this site (such as the docking interaction with the Tyr313-phosphorylated hinge region) decreases Ser359 phosphorylation. This model is supported by cell-based studies showing that the H2O2-dependent increase in Tyr313 phosphorylation is associated with a decrease in Ser359 phosphorylation on WT-PKCδ but not the PKCδ-Y313F mutant.
The G-loop sequence is highly conserved in many protein kinases. Structural studies of PKA and several PKCs show that the G loop forms a flexible clamp that orients the γ-phosphate of ATP for transfer to substrate; localized changes in the position of this loop influence the kinetics of nucleotide binding and the phosphoryl transfer reaction. The Ser in the GKGSFG sequence in PKA is strategically positioned at the tip of the G loop at the entrance to the ATP-binding cleft, in close proximity to the P site on substrates (Fig. 7A). This site in the G loop of several other kinases has been implicated in the control of catalytic activity. For example, CDK1 (a regulator of the eukaryotic cell cycle) is maintained in an inactive conformation by inhibitory phosphorylations at Y15 and, to a lesser extent, in the adjacent T14 in its ATP-binding GEGTYG motif; dephosphorylation of these sites at the onset of mitosis leads to enzyme activation (23). The nononcogenic c-ABL proto-oncogene is activated by a G-loop GGGQ(Y253F)G substitution (24); point mutations in Bcr-Abl (the constitutively active tyrosine kinase that drives malignant transformation in chronic myeloid leukemia) that alter G-loop Y253 phosphorylation confer drug resistance and enhanced oncogenicity (25, 26). Finally, there is evidence that c-Raf is maintained in a basal autoinhibited state through G-loop autophosphorylation and that c-Raf becomes activated (leading to a paradoxical activation of the mitogen-activated protein kinase pathway) by ATP-competitive Raf inhibitors that prevent G-loop autoinhibitory phosphorylation (27). However, posttranslational modifications at the G loop that regulate PKC (or PKA) activities have never been reported. This study identifies G-loop regulation of two key aspects of PKCδ's enzymology, as follows.
(i) Phosphomimetic or bulky substitutions at Ser359 inhibit PKCδ phosphorylation of TXR motifs on cTnI and cTnT but not cTnI phosphorylation at Ser23/Ser24. Ser359 phosphorylation could in theory influence PKCδ's substrate specificity indirectly by restructuring the catalytic pocket to accommodate a wider range of phosphorylation motifs or by modulating docking interactions that control substrate alignment in the catalytic pocket. However, experiments with short peptide substrates harboring single-residue P-site substitutions show that a phosphomimetic substitution at position 359 prevents phosphorylation of Thr-phosphoacceptor sites (presumably due to steric clash with the Thr methyl group); Ser-phosphoacceptor sites are not affected. Hence, while recent literature has focused on consensus phosphorylation motifs (residues that are either preferred or deselected at positions flanking the P site on a particular substrate) as the key determinant of enzyme substrate specificity, our studies show that PKCδ activity can also vary depending upon whether the P site is a Ser or Thr residue. The novelty of this observation deserves emphasis. While Chen et al. recently identified the “DFG +1” residue (a residue immediately downstream of a conserved Asp-Phe-Gly sequence) in the activation segment as a structural determinant that defines the inherent P-site specificity of various Ser/Thr kinases (28), a dynamically regulated posttranslational modification that can alter P-site specificity in a stimulus-specific manner is unprecedented. This study implicates ATP-positioning loop phosphorylation at Ser359 as a mechanism that dynamically regulates the P-site specificity of PKCδ.
(ii) An S359A substitution imparts a high level of lipid-independent catalytic activity. The PKCδ-S359A mutant is a constitutively active enzyme; it acts (much like the lipid-independent form of PKCδ that accumulates in cells subjected to oxidative stress) to phosphorylate substrates throughout the cell, not just on lipid membranes. This suggests that the ATP-positioning loop site participates in an autoinhibitory intramolecular interaction and that this intramolecular interaction is dynamically controlled by G-loop phosphorylation. This result is consistent with recent structural evidence that the basal catalytic activity of PKCβII is limited by an autoinhibitory interaction between the ATP binding site and the C1 domain (29).
Several aspects of our study have implications for the pathogenesis and/or treatment of clinical disease. First, the observation that phosphomimetic and bulky hydrophobic amino acid substitutions at Ser359 produce similar changes in PKCδ activity indicates that regulation is due to steric hindrance from the bulky phosphate group, rather than from the negative charge, at this site. This suggests that other bulky substitutions might have similar consequences. This may be pertinent to the diabetic state, where both PKC and increased protein O-GlcNAcylation contribute to cardiac dysfunction (30). Studies to date suggest that hyperglycemia activates PKC by inducing oxidative stress or increasing de novo DAG synthesis. However, the evidence that Ser349 in PKCα's G loop is a target for O-GlcNAcylation (addition of a bulky sugar moiety [21]) suggests that PTMs directed at the G loop might also underlie hyperglycemia-induced changes in PKC isoform activity.
Second, while PKCδ-ΔC2 was used in this study as a molecular tool to interrogate the structural determinants that regulate PKCδ catalytic activity, this construct resembles a truncated PKCδ isoform that is expressed in a developmentally regulated manner as a result of alternative splicing in mouse testis (31). Since disease-specific changes in PKCδ mRNA splicing have recently been identified in certain heart failure phenotypes (32, 33), a truncated PKCδ isoform might be a component of the altered cardiac transcriptome that contributes to pathological cardiac stress responses.
Finally, this study identifies a protein-protein interaction involving the C2 domain and the Tyr313-phosphorylated hinge region that calibrates PKCδ's substrate specificity by controlling phosphorylation at Ser359. This mechanism is prominent during oxidative stress, where Src activation leads to an increase in PKCδ-Tyr313 phosphorylation; PKCδ-Tyr313 phosphorylation is not a feature of G protein-coupled receptor-activated signaling responses. Stimulus-specific differences in PKCδ phosphorylation at Tyr313 and Ser359 that impact substrate specificity provide a very plausible explanation for PKCδ's diverse roles in both the pathogenesis of ischemia-reperfusion injury and as a mediator of ischemic preconditioning (a cardioprotective mechanism that mitigates ischemic injury) (34). Stimulus-specific signaling modes for PKCδ that link to functionally distinct cellular responses could also explain why recent efforts to bring a PKCδ inhibitor compound to the clinic for the treatment of ischemic cardiac injury met with failure; the trial involved a PKCδ inhibitor that was not designed to discriminate between pools of PKCδ with distinct phosphorylation patterns at Tyr313 and Ser359. Our results suggest that an inhibitor compound designed to prevent the C2 domain-pTyr313 interaction (and/or Ser359 dephosphorylation) might selectively block the redox-activated PKCδ-dependent signaling responses that contribute to ischemic injury and offer significant therapeutic advantage.
Supplementary Material
ACKNOWLEDGMENTS
This work was supported by HL77860 (S.F.S) and grants to the Johns Hopkins Innovation Proteomics Center in Heart Failure (HHSN268201000032C and NHLBI-HV-10-05 to J.E.V.E.). S.F.S. was supported by an award from the NIH (1DP2 CA186752-01) and by an AHA Scientist Development Grant (13SDG14270009).
Footnotes
Supplemental material for this article may be found at http://dx.doi.org/10.1128/MCB.01436-14.
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