Table 4.
List of candidate genes identified in the QTL mapped region qShb 9.2
| Chr. ID | Locus ID | Position start – end (bp) | Description (RAP-DB annotation) |
|---|---|---|---|
| Chr# 9 | Os09g0520550 | 21076561- 21079025 | Hypothetical protein. |
| Os09g0522000 | 21137921- 21138817 | Similar to CBF-like protein | |
| Os09g0525300 | 21354401- 21357048 | Cyclin-like F-box domain containing protein | |
| Os09g0527900 | 21478060- 21481626 | Similar to Hd1-like protein | |
| Os09g0528700 | 21523011- 21524758 | Cytochrome P450 family protein | |
| Os09g0530800 | 21626098- 21629408 | Proteinase inhibitor, propeptide domain containing protein | |
| Os09g0533200 | 21770245-21771297 | Similar to β-1, 3-glucanase precursor (EC 3.2.1.39). | |
| Os09g0534600 | 21844366- 21849310 | Similar to Heat shock protein 82 | |
| Os09g0534800 | 21860615- 21863638 | Transcription initiation factor IIB (TFIIB). | |
| Os09g0535200 | 21877935-21881669 | Conserved Hypothetical protein. | |
| Os09g0535400 | 21886226-21887515 | Curculin-like (mannose-binding) lectin domain containing protein. | |
| Os09g0536000 | 21895656-21900367 | Exodeoxyribonuclease III xth family protein. | |
| Os09g0537700 | 21987605-21989587 | Ribonuclease T2 family protein | |
| Os09g0538450 | 22028070-22028968 | Hypothetical protein. | |
| Os09g0540800 | 22123789-22125783 | Eukaryotic transcription factor, DNA-binding domain containing protein | |
| Os09g0541000 | 22141777-22143042 | Similar to Plasma membrane intrinsic protein (Aquaporin). | |
| Os09g0541900 | 22170483-22173850 | Similar to 26S proteasome subunit RPN3a. | |
| Os09g0543900 | 22282226-22284281 | Transferase family protein. | |
| Os09g0544400 | 22328257-22346493 | Similar to Glutathione S-transferase GST 16 (EC 2.5.1.18). | |
| Os09g0544900 | 22369643-22374563 | Glucose/ribitol dehydrogenase family protein. | |
| Os09g0547800 | 22484690-22486975 | Cyclin-like F-box domain containing protein. | |
| Os09g0549700 | 22577011-22578446 | Ribosomal protein L18P/L5E family protein. | |
| Os09g0551000 | 22629301-22632936 | Protein kinase domain containing protein. | |
| Os09g0553100 | 22743724-22744310 | Histone H4. | |
| Os09g0553600 | 22762665-22766553 | Similar to NADC homolog. | |
| Os09g0560200 | 23092024-23093755 | Similar to 26S protease regulatory subunit 6B | |
| Os09g0562400 | 23166029-23177080 | Similar to mutator-like transposase [Oryza sativa (japonica cultivar- group)]. | |
| Os09g0563300 | 23214566-23218631 | Similar to RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit) | |
| Os09g0565400 | 23345149-23348841 | Lipoprotein, type 6 family protein | |
| Os09g0569200 | 23544922-23548178 | Similar to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase). | |
| Os09g0569300 | 23548388-23551570 | Similar to Calmodulin-binding heat-shock protein | |
| Os09g0569400 | 23551978-23559137 | Beta-lactamase-like domain containing protein |