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Acta Crystallographica Section E: Crystallographic Communications logoLink to Acta Crystallographica Section E: Crystallographic Communications
. 2015 Apr 9;71(Pt 5):o297–o298. doi: 10.1107/S2056989015006465

Crystal stucture of methyl 2-({[2-(meth­oxy­carbon­yl)phen­yl]carbamo­yl}amino)­benzoate

Hasna Yassine a, Mostafa Khouili a,*, Lahcen El Ammari b, Mohamed Saadi b, El Mostafa Ketatni c
PMCID: PMC4420073  PMID: 25995913

Abstract

In the title compound, C17H16N2O5, the dihedral angles between the central urea [N—C(=O)—N] fragment and its attached benzene rings are 20.20 (14) and 24.24 (13)°; the dihedral angle between the aromatic rings is 42.1 (1)°. The mol­ecular conformation is consolidated by two intra­molecular N—H⋯O hydrogen bonds, which both generate S(6) rings. In the crystal, inversion dimers linked by pairs of C—H⋯O inter­actions generate R 2 2(14) loops. The dimers are linked by further C—H⋯O inter­actions into (011) sheets.

Keywords: crystal structure, urea derivative, hydrogen bonding

Related literature  

For the medical and biological activities of urea derivatives, see: Abad et al. (2004); Chen et al. (2005); Batra et al. (2006). For cytokinin activity, see: Wang et al. (2001); Ricci et al. (2005).graphic file with name e-71-0o297-scheme1.jpg

Experimental  

Crystal data  

  • C17H16N2O5

  • M r = 328.32

  • Monoclinic, Inline graphic

  • a = 9.005 (8) Å

  • b = 23.80 (2) Å

  • c = 7.400 (7) Å

  • β = 93.66 (4)°

  • V = 1583 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 296 K

  • 0.42 × 0.36 × 0.29 mm

Data collection  

  • Bruker X8 APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.693, T max = 0.747

  • 11500 measured reflections

  • 3364 independent reflections

  • 1667 reflections with I > 2σ(I)

  • R int = 0.066

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.050

  • wR(F 2) = 0.137

  • S = 0.95

  • 3364 reflections

  • 220 parameters

  • H-atom parameters constrained

  • Δρmax = 0.21 e Å−3

  • Δρmin = −0.20 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: PLATON (Spek, 2009) and publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015006465/hb7393sup1.cif

e-71-0o297-sup1.cif (25KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015006465/hb7393Isup2.hkl

e-71-0o297-Isup2.hkl (165KB, hkl)

Supporting information file. DOI: 10.1107/S2056989015006465/hb7393Isup3.cml

. DOI: 10.1107/S2056989015006465/hb7393fig1.tif

A view of the mol­ecule of the title compound, showing displacement ellipsoids drawn at the 50% probability level.

. DOI: 10.1107/S2056989015006465/hb7393fig2.tif

Part of the crystal structure of the title compound, showing hydrogen-bonded (dashed lines) dimers.

CCDC reference: 1056943

Additional supporting information: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (, ).

DHA DH HA D A DHA
N2H2NO5 0.86 1.96 2.677(3) 140
N3H3NO2 0.86 1.92 2.659(3) 144
C6H6O3i 0.93 2.57 3.442(4) 157
C17H17CO2ii 0.96 2.46 3.176(4) 132

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors thank the Unit of Support for Technical and Scientific Research (UATRS, CNRST) for the X-ray measurements and the University Sultan Moulay Slimane, Beni-Mellal, for financial support.

supplementary crystallographic information

S1. Comment

Urea derivatives are very interesting reagents due to their useful properties and important medical and biological applications, such as insecticidal, fungicidal, herbicidal, anti-infectives and plant-growth regulating activities (Abad et al., 2004; Chen et al., 2005, Batra et al., 2006), especially cytokinin activity (Wang et al., 2001; Ricci et al., 2005). Symmetrical disubstituted ureas generally form a polar hydrogen-bond chain, with anti NH donors and carbonyl O-atom acceptors in a bifurcated motif. As part of our studies in this area, the title compound C17H16N2O5 was synthesized and its crystal structure is reported in the present work.

The molecular structure of the title compound, a symmetrical urea derivative, is displayed in Fig. 1. This molecule is build up from two methyl benzoate linked through N–C(=O)–N fragment but not symmetric. The dihedral angle between the two phenyl rings (C3 to C8) and (C10 to C15) is of 42.1 (1)°.

In the crystal, the molecular conformation is stabilized by two intramolecular N—H···O hydrogen bonds and each molecule is linked to its symmetric by two intermolecular C—H···O hydrogen bonds to form centrosymmetric dimers as shown in Fig.2.

S2. Experimental

A solution of 2-(methoxycarbonyl)benzoic acid (100 mg, 0.56 mmol), DPPA (0.194 ml, 0.90 mmol) and Et3N (0.127 ml, 0.90 mmol) in toluene (3 ml) was refluxed for 4 h. After cooling to room temperature, the reaction mixture was concentrated. The residue was purified by column chromatography using EtOAc-Hexane (1:9 v/v) as eluent to give yellow blocks with yield = 40% and m.p. = 411 K.

S3. Refinement

All H atoms could be located in a difference Fourier map. However, they were placed in calculated positions with C–H = 0.93–0.96 Å; N—H = 0.86 Å, and refined as riding on their parent atoms with Uiso(H) = 1.2 Ueq for aromatic, C—H, N–H and Uiso(H) = 1.5 Ueq for methyl. Two outlier (1 0 0) and (0 2 0) was omitted in the last cycles of refinement.

Figures

Fig. 1.

Fig. 1.

A view of the molecule of the title compound, showing displacement ellipsoids drawn at the 50% probability level.

Fig. 2.

Fig. 2.

Part of the crystal structure of the title compound, showing hydrogen-bonded (dashed lines) dimers.

Crystal data

C17H16N2O5 F(000) = 688
Mr = 328.32 Dx = 1.378 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 3364 reflections
a = 9.005 (8) Å θ = 2.4–26.7°
b = 23.80 (2) Å µ = 0.10 mm1
c = 7.400 (7) Å T = 296 K
β = 93.66 (4)° Block, yellow
V = 1583 (3) Å3 0.42 × 0.36 × 0.29 mm
Z = 4

Data collection

Bruker X8 APEXII CCD diffractometer 3364 independent reflections
Radiation source: fine-focus sealed tube 1667 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.066
φ and ω scans θmax = 26.7°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −11→7
Tmin = 0.693, Tmax = 0.747 k = −29→30
11500 measured reflections l = −9→9

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050 H-atom parameters constrained
wR(F2) = 0.137 w = 1/[σ2(Fo2) + (0.0578P)2] where P = (Fo2 + 2Fc2)/3
S = 0.95 (Δ/σ)max < 0.001
3364 reflections Δρmax = 0.21 e Å3
220 parameters Δρmin = −0.20 e Å3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.0052 (11)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.8216 (3) 0.50547 (11) 0.6105 (4) 0.0617 (8)
H1A 0.8796 0.5351 0.5624 0.093*
H1B 0.8023 0.4772 0.5194 0.093*
H1C 0.8755 0.4891 0.7136 0.093*
C2 0.5813 (3) 0.49037 (10) 0.7155 (3) 0.0413 (6)
C3 0.4424 (2) 0.51598 (9) 0.7748 (3) 0.0370 (6)
C4 0.4261 (3) 0.57446 (9) 0.7763 (3) 0.0463 (6)
H4 0.5028 0.5968 0.7377 0.056*
C5 0.3000 (3) 0.59993 (10) 0.8334 (3) 0.0524 (7)
H5 0.2913 0.6389 0.8324 0.063*
C6 0.1861 (3) 0.56676 (10) 0.8925 (3) 0.0496 (7)
H6 0.1012 0.5837 0.9328 0.060*
C7 0.1975 (3) 0.50878 (9) 0.8921 (3) 0.0421 (6)
H7 0.1199 0.4871 0.9315 0.050*
C8 0.3249 (3) 0.48226 (9) 0.8331 (3) 0.0377 (6)
C9 0.2326 (3) 0.38375 (10) 0.8583 (3) 0.0429 (6)
C10 0.2281 (3) 0.27870 (9) 0.8808 (3) 0.0420 (6)
C11 0.0793 (3) 0.27180 (10) 0.8152 (3) 0.0519 (7)
H11 0.0219 0.3031 0.7827 0.062*
C12 0.0181 (3) 0.21894 (11) 0.7988 (4) 0.0607 (8)
H12 −0.0800 0.2150 0.7535 0.073*
C13 0.0991 (3) 0.17166 (11) 0.8482 (4) 0.0627 (8)
H13 0.0560 0.1362 0.8371 0.075*
C14 0.2450 (3) 0.17759 (10) 0.9142 (3) 0.0511 (7)
H14 0.2997 0.1457 0.9478 0.061*
C15 0.3129 (3) 0.23038 (9) 0.9319 (3) 0.0407 (6)
C16 0.4711 (3) 0.23461 (10) 1.0022 (3) 0.0460 (6)
C17 0.6894 (3) 0.18555 (11) 1.1114 (4) 0.0695 (9)
H17A 0.6980 0.2026 1.2292 0.104*
H17B 0.7470 0.2066 1.0300 0.104*
H17C 0.7258 0.1477 1.1196 0.104*
N2 0.2964 (2) 0.33173 (7) 0.8915 (3) 0.0472 (5)
H2N 0.3903 0.3306 0.9209 0.057*
N3 0.3414 (2) 0.42374 (7) 0.8385 (3) 0.0443 (5)
H3N 0.4311 0.4140 0.8169 0.053*
O1 0.68143 (18) 0.52810 (7) 0.6650 (2) 0.0536 (5)
O2 0.60738 (18) 0.44002 (7) 0.7108 (2) 0.0557 (5)
O3 0.0994 (2) 0.39320 (7) 0.8476 (3) 0.0692 (6)
O4 0.5330 (2) 0.18523 (7) 1.0436 (3) 0.0618 (5)
O5 0.5419 (2) 0.27802 (7) 1.0207 (3) 0.0710 (6)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0386 (16) 0.080 (2) 0.0678 (19) −0.0038 (14) 0.0124 (14) 0.0022 (15)
C2 0.0424 (15) 0.0422 (15) 0.0387 (14) −0.0047 (12) −0.0025 (12) 0.0035 (11)
C3 0.0377 (14) 0.0362 (13) 0.0364 (13) −0.0004 (11) −0.0018 (11) 0.0031 (10)
C4 0.0503 (16) 0.0346 (13) 0.0536 (16) −0.0020 (12) 0.0010 (13) 0.0064 (11)
C5 0.0583 (18) 0.0350 (14) 0.0638 (18) 0.0053 (13) 0.0029 (14) −0.0007 (12)
C6 0.0504 (16) 0.0481 (15) 0.0501 (16) 0.0133 (13) 0.0017 (13) −0.0014 (12)
C7 0.0438 (15) 0.0390 (14) 0.0435 (15) 0.0014 (12) 0.0039 (12) 0.0005 (11)
C8 0.0414 (14) 0.0359 (13) 0.0352 (13) 0.0003 (11) −0.0029 (11) 0.0003 (10)
C9 0.0443 (16) 0.0388 (14) 0.0465 (15) −0.0055 (12) 0.0091 (12) 0.0008 (11)
C10 0.0484 (16) 0.0390 (14) 0.0396 (14) −0.0089 (12) 0.0111 (12) 0.0001 (10)
C11 0.0528 (18) 0.0471 (16) 0.0561 (17) −0.0068 (13) 0.0063 (14) 0.0036 (12)
C12 0.0591 (19) 0.0541 (18) 0.0686 (19) −0.0156 (15) 0.0011 (15) −0.0027 (14)
C13 0.066 (2) 0.0463 (16) 0.076 (2) −0.0211 (15) 0.0036 (16) −0.0101 (14)
C14 0.0626 (19) 0.0346 (14) 0.0570 (17) −0.0066 (13) 0.0117 (14) −0.0041 (12)
C15 0.0467 (15) 0.0362 (13) 0.0404 (14) −0.0069 (11) 0.0115 (12) −0.0024 (10)
C16 0.0584 (18) 0.0328 (14) 0.0480 (16) −0.0052 (13) 0.0128 (13) 0.0008 (11)
C17 0.0476 (18) 0.0535 (17) 0.107 (3) 0.0005 (14) 0.0035 (17) 0.0059 (16)
N2 0.0441 (12) 0.0362 (11) 0.0614 (14) −0.0054 (10) 0.0046 (11) 0.0055 (10)
N3 0.0384 (12) 0.0321 (11) 0.0632 (14) 0.0010 (9) 0.0094 (10) 0.0043 (9)
O1 0.0435 (11) 0.0497 (10) 0.0688 (12) −0.0056 (8) 0.0134 (9) 0.0033 (8)
O2 0.0486 (11) 0.0416 (10) 0.0780 (13) 0.0030 (9) 0.0137 (9) −0.0019 (9)
O3 0.0417 (11) 0.0492 (11) 0.1177 (18) −0.0013 (9) 0.0138 (11) −0.0042 (10)
O4 0.0544 (12) 0.0369 (10) 0.0938 (15) −0.0016 (9) 0.0033 (10) 0.0022 (9)
O5 0.0606 (13) 0.0380 (11) 0.1121 (17) −0.0105 (9) −0.0126 (12) 0.0073 (10)

Geometric parameters (Å, º)

C1—O1 1.453 (3) C10—N2 1.404 (3)
C1—H1A 0.9600 C10—C11 1.405 (4)
C1—H1B 0.9600 C10—C15 1.418 (3)
C1—H1C 0.9600 C11—C12 1.376 (3)
C2—O2 1.222 (3) C11—H11 0.9300
C2—O1 1.342 (3) C12—C13 1.377 (4)
C2—C3 1.483 (3) C12—H12 0.9300
C3—C4 1.400 (3) C13—C14 1.379 (4)
C3—C8 1.417 (3) C13—H13 0.9300
C4—C5 1.378 (3) C14—C15 1.400 (3)
C4—H4 0.9300 C14—H14 0.9300
C5—C6 1.387 (3) C15—C16 1.489 (4)
C5—H5 0.9300 C16—O5 1.217 (3)
C6—C7 1.384 (3) C16—O4 1.328 (3)
C6—H6 0.9300 C17—O4 1.465 (3)
C7—C8 1.403 (3) C17—H17A 0.9600
C7—H7 0.9300 C17—H17B 0.9600
C8—N3 1.401 (3) C17—H17C 0.9600
C9—O3 1.218 (3) N2—H2N 0.8600
C9—N2 1.381 (3) N3—H3N 0.8646
C9—N3 1.381 (3)
O1—C1—H1A 109.5 C12—C11—C10 120.3 (2)
O1—C1—H1B 109.5 C12—C11—H11 119.8
H1A—C1—H1B 109.5 C10—C11—H11 119.8
O1—C1—H1C 109.5 C11—C12—C13 121.4 (3)
H1A—C1—H1C 109.5 C11—C12—H12 119.3
H1B—C1—H1C 109.5 C13—C12—H12 119.3
O2—C2—O1 121.0 (2) C12—C13—C14 119.1 (2)
O2—C2—C3 125.3 (2) C12—C13—H13 120.5
O1—C2—C3 113.7 (2) C14—C13—H13 120.5
C4—C3—C8 118.7 (2) C13—C14—C15 121.7 (2)
C4—C3—C2 120.1 (2) C13—C14—H14 119.2
C8—C3—C2 121.2 (2) C15—C14—H14 119.2
C5—C4—C3 121.9 (2) C14—C15—C10 118.6 (2)
C5—C4—H4 119.0 C14—C15—C16 119.7 (2)
C3—C4—H4 119.0 C10—C15—C16 121.7 (2)
C4—C5—C6 119.1 (2) O5—C16—O4 121.1 (3)
C4—C5—H5 120.4 O5—C16—C15 125.4 (2)
C6—C5—H5 120.4 O4—C16—C15 113.5 (2)
C7—C6—C5 120.7 (2) O4—C17—H17A 109.5
C7—C6—H6 119.6 O4—C17—H17B 109.5
C5—C6—H6 119.6 H17A—C17—H17B 109.5
C6—C7—C8 120.8 (2) O4—C17—H17C 109.5
C6—C7—H7 119.6 H17A—C17—H17C 109.5
C8—C7—H7 119.6 H17B—C17—H17C 109.5
N3—C8—C7 121.7 (2) C9—N2—C10 128.3 (2)
N3—C8—C3 119.4 (2) C9—N2—H2N 117.6
C7—C8—C3 118.7 (2) C10—N2—H2N 114.0
O3—C9—N2 125.1 (2) C9—N3—C8 127.8 (2)
O3—C9—N3 124.7 (2) C9—N3—H3N 120.8
N2—C9—N3 110.3 (2) C8—N3—H3N 111.1
N2—C10—C11 122.0 (2) C2—O1—C1 116.1 (2)
N2—C10—C15 119.2 (2) C16—O4—C17 117.03 (19)
C11—C10—C15 118.8 (2)
O2—C2—C3—C4 179.2 (2) C13—C14—C15—C16 −179.4 (2)
O1—C2—C3—C4 −0.7 (3) N2—C10—C15—C14 −177.6 (2)
O2—C2—C3—C8 0.1 (3) C11—C10—C15—C14 0.3 (3)
O1—C2—C3—C8 −179.83 (19) N2—C10—C15—C16 2.0 (3)
C8—C3—C4—C5 0.3 (3) C11—C10—C15—C16 179.9 (2)
C2—C3—C4—C5 −178.9 (2) C14—C15—C16—O5 178.9 (2)
C3—C4—C5—C6 0.5 (4) C10—C15—C16—O5 −0.8 (4)
C4—C5—C6—C7 −0.9 (4) C14—C15—C16—O4 −0.5 (3)
C5—C6—C7—C8 0.4 (3) C10—C15—C16—O4 179.9 (2)
C6—C7—C8—N3 177.4 (2) O3—C9—N2—C10 15.1 (4)
C6—C7—C8—C3 0.4 (3) N3—C9—N2—C10 −164.8 (2)
C4—C3—C8—N3 −177.8 (2) C11—C10—N2—C9 6.1 (4)
C2—C3—C8—N3 1.4 (3) C15—C10—N2—C9 −176.1 (2)
C4—C3—C8—C7 −0.8 (3) O3—C9—N3—C8 11.5 (4)
C2—C3—C8—C7 178.4 (2) N2—C9—N3—C8 −168.6 (2)
N2—C10—C11—C12 177.0 (2) C7—C8—N3—C9 16.1 (3)
C15—C10—C11—C12 −0.9 (4) C3—C8—N3—C9 −167.0 (2)
C10—C11—C12—C13 1.0 (4) O2—C2—O1—C1 −1.7 (3)
C11—C12—C13—C14 −0.5 (4) C3—C2—O1—C1 178.3 (2)
C12—C13—C14—C15 −0.2 (4) O5—C16—O4—C17 −0.2 (4)
C13—C14—C15—C10 0.2 (4) C15—C16—O4—C17 179.1 (2)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N2—H2N···O5 0.86 1.96 2.677 (3) 140
N3—H3N···O2 0.86 1.92 2.659 (3) 144
C6—H6···O3i 0.93 2.57 3.442 (4) 157
C17—H17C···O2ii 0.96 2.46 3.176 (4) 132

Symmetry codes: (i) −x, −y+1, −z+2; (ii) x, −y+1/2, z+1/2.

Footnotes

Supporting information for this paper is available from the IUCr electronic archives (Reference: HB7393).

References

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  2. Batra, S., Tusi, Z. & Madapa, S. (2006). Anti-Infective Agent. Med. Chem. 5, 135–160.
  3. Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Chen, L., Wang, Q. M., Huang, R. Q., Mao, C. H., Shang, J. & Bi, F. C. (2005). J. Agric. Food Chem. 53, 38–41. [DOI] [PubMed]
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  10. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015006465/hb7393sup1.cif

e-71-0o297-sup1.cif (25KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015006465/hb7393Isup2.hkl

e-71-0o297-Isup2.hkl (165KB, hkl)

Supporting information file. DOI: 10.1107/S2056989015006465/hb7393Isup3.cml

. DOI: 10.1107/S2056989015006465/hb7393fig1.tif

A view of the mol­ecule of the title compound, showing displacement ellipsoids drawn at the 50% probability level.

. DOI: 10.1107/S2056989015006465/hb7393fig2.tif

Part of the crystal structure of the title compound, showing hydrogen-bonded (dashed lines) dimers.

CCDC reference: 1056943

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Crystallographic Communications are provided here courtesy of International Union of Crystallography

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