Crystal structure of poly[μ₂-aqua-aqua­(μ₂-4-nitro-2,5,6-trioxo-1,2,5,6-tetra­hydro­pyridin-3-olato)hemi-μ₄-oxalato-barium(II)]

In a Ba coordination polymer incorporating 4-nitro-2,5,6-trioxo-1,2,5,6-tetra­hydro­pyridin-3-olate, oxalate and aqua ligands, the complex monomers are connected into polymeric two-dimensional layers parallel to the bc plane. Inter­molecular O—H⋯O hydrogen bonds link these layers into a three-dimensional supra­molecular framework.

Abstract

In the title coordination polymer, [Ba(C₅HN₂O₆)(C₂O₄)_0.5(H₂O)₂]_n, the tenfold coordination of the Ba centre consists of four O atoms from the two 4-nitro-2,5,6-trioxo-1,2,5,6-tetra­hydro­pyridin-3-olate (L) anions, three O atoms of two oxalate anions and three water mol­ecules. The Ba—O bond lengths fall in the range 2.698 (3)–2.978 (3) Å. The L ligand chelates two Ba atoms related by a screw axis, leading to formation of fused five- and six-membered chelate rings. Due to the bridging function of the ligands and water mol­ecules, the complex monomers are connected into polymeric two-dimensional layers parallel to the bc plane. Inter­molecular O—H⋯O hydrogen bonds link these layers into a three-dimensional supra­molecular framework.

Chemical context  

Mixed ligand coordination polymers containing bridging oxalate anions and 1,2-dicarbonyl carbocyclic or heterocyclic compounds exhibit high reactivity and different types of magnetism (Aldoshin, 2008 ▸; Coronado et al., 2007 ▸; Kitagawa & Kawata, 2002 ▸; Kovalchukova & Strashnova, 2014 ▸; Ohba & Okawa, 2000 ▸). Such compounds are of chemical inter­est, since a large number of potential donors available in the ligands predetermine a variety of coordination modes, which afford different geometries and dimensionalities of coordination polymers. Recently, we reported the synthesis, crystal structure and some properties of metal complexes of the 2,3,5,6-tetra­oxo-4-nitro-4-idene anion (Kovalchukova et al., 2014 ▸, 2014 ▸; Dinh Do et al., 2013 ▸). The above-mentioned anion does not replace the water mol­ecules from the inner sphere of the hydrated metal cations [M(H₂O)₆]ⁿ⁺, but can coordinate metal centres like sodium and silver(I). In the present paper, we report the mol­ecular and crystal structure of a mixed-ligand barium complex containing 4-nitro-2,5,6-trioxo-1,2,5,6-tetra­hydro­pyridin-3-olate (L) and oxalate anions as ligands.

Structural commentary  

In the title compound, [Ba(C₅HN₂O₆)(C₂O₄)_0.5(H₂O)₂]_n, (I) (Fig. 1 ▸), the tenfold coordination of the Ba1 atom (Table 1 ▸) is formed by the O2, O5, O1 and O2 atoms of two 4-nitro-2,3,5,6-tetra­oxo­pyridine-4-ide anions (L), the O7, O8 and O7A atoms of two oxalate anions, and the O9, O9A and O10 atoms of water mol­ecules. The Ba—O bond lengths fall in the range 2.698 (3)–2.978 (3) Å, which is typical for ten-coordinate barium complexes containing oxalate anions (Viciano-Chumillas et al., 2010 ▸; Heinl et al., 2002 ▸; Marinescu et al., 2005 ▸; Belombe et al., 2003 ▸, 2012 ▸; Larsson, 2001 ▸; Bouayad et al., 1995 ▸; Iveson et al., 2011 ▸). The L anion has a flattened skeleton. The r.m.s. deviation of the six ring atoms from their mean plane is 0.0256 Å; the O2 and O4 atoms lie in this plane deviating by 0.049 (3) and 0.010 (3) Å, respectively, whereas the O1 and O3 atoms deviate from it by 0.171 (3) and 0.077 (3) Å, respectively. The plane of the nitro group is rotated by 11.9 (8)° with respect to the ring plane. The L ligand chelates two Ba atoms related by a screw axis forming fused chelate rings. The six-membered ring is almost planar (r.m.s. deviation = 0.0353 Å) and the five–membered ring is folded along the O1—O2 line by 19.0°. The geometry of the L anion in the Ba complex is close to that in the compounds studied earlier (Kovalchukova et al., 2014 ▸; Dinh Do et al., 2013 ▸). All C=O bonds are of the double-bond type [1.200 (5)–1.229 (5) Å]. The monodentate coordination of L via the O atom of a nitro group attached to a benzene ring is in accordance with Venkatasubramanian et al. (1984 ▸), Harrowfield et al. (1998 ▸) and Chantrapromma et al. (2002 ▸). The centrosymmetric oxalate anion connects four Ba atoms closing two almost planar five–membered rings (r.m.s. deviation of rings = 0.0415 Å).

Figure 1.

View of (I), showing the atom-labelling scheme and 50% probability displacement ellipsoids. [Symmetry codes: (i) −x, y + , −z + ; (ii) −x, −y + 1, −z + 1; (iii) −x, y − , −z + .]

Table 1. Selected bond lengths ().

Ba1O8i	2.698(3)	Ba1O10	2.882(4)
Ba1O7	2.728(3)	Ba1O1iii	2.889(3)
Ba1O9	2.755(3)	Ba1O5	2.914(4)
Ba1O7ii	2.805(3)	Ba1O2	2.931(3)
Ba1O9iii	2.860(3)	Ba1O2iii	2.978(3)

Symmetry codes: (i) ; (ii) ; (iii) .

Supra­molecular features  

Due to the bridging function of the L ligand and the O9 water mol­ecule, the hydrated complex cations [Ba(L)(H₂O)₂]⁺ form wide zigzag bands running along the screw axes in the b-axis direction (Fig. 2 ▸). Oxalate anions connect the bands into thick two-dimensional networks parallel to bc. The networks have corrugated surfaces with terminal O3, O4 and O6 atoms of the L ligand on the ‘hills’ and water mol­ecules in the ‘hollows’. In the packing (Fig. 3 ▸), the ‘hills’ enter the ‘hollows’ of adjacent networks. Two-centre hydrogen bonds O9—H2⋯O3 and O10—H5⋯O4 and three-centre bonds O10—H4⋯(O3,O6) (Table 2 ▸) link the networks into a three-dimensional framework. Hydrogen bonds N1—H1⋯O6 and O9—H3⋯O8 link the elements of a band and a network, respectively.

Figure 2.

One-dimensional polymeric chain in (I). Oxalato ligands omitted for clarity.

Figure 3.

two-dimensional polymeric layer in (I) viewed approximately along the a axis.

Table 2. Hydrogen-bond geometry (, ).

DHA	DH	HA	D A	DHA
N1H1O6i	0.86	2.21	3.052(5)	166
O9H2O3ii	0.82	2.10	2.877(4)	158
O9H3O8i	0.82	1.84	2.639(4)	163
O10H4O3ii	0.82	2.14	2.828(5)	141
O10H4O6ii	0.82	2.30	3.010(5)	146
O10H5O4iii	0.82	2.41	3.210(5)	165

Symmetry codes: (i) ; (ii) ; (iii) .

Database survey  

The synthesis, crystal structure and some properties of metal complexes of the 4-nitro-2,3,5,6-tetraoxo-4-idene anion are described in Kovalchukova et al. (2014 ▸) and Dinh Do et al. (2013 ▸). Model structures of complexes containing carbocyclic polyoxo compounds are reviewed in Kitagawa & Kawata (2002 ▸) and Kovalchukova & Strashnova (2014 ▸). Ten coordinated structures of Ba cations with oxalate anions containing other O-donating ligands have been described (Viciano-Chumillas et al., 2010 ▸; Marinescu et al., 2005 ▸; Belombe et al., 2003 ▸, 2012 ▸; Larsson, 2001 ▸; Bouayad et al., 1995 ▸; Iveson et al., 2011 ▸). Monodentate coordination via the O atom of a nitro aromatic group is described by Venkatasubramanian et al. (1984 ▸), Harrowfield et al. (1998 ▸) and Chantrapromma et al. (2002 ▸).

Synthesis and crystallization  

Single crystals of (I) were grown by the slow evaporation of an ethanol solution of a 1:1:1 molar mixture of barium chloride, ammonium oxalate and ammonium 2,3,5,6-tetraoxo-4-nitro-4-inide.

Refinement details  

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. The H atoms of water mol­ecules were localized in a difference map; O—H distances were normalized. The position of the amino H atom was calculated. All H atoms were refined within the riding model, with U _iso(H) = 1.2U _eq of the parent atom. The crystal studied was a twin without superposition of reciprocal lattices. Apparently, an accidental overlapping of reflections of two domains is responsible for increased displacement ellipsoids of some atoms. The U _ij components of atom O5 were restrained to approximate the isotropic behaviour.

Table 3. Experimental details.

Crystal data
Chemical formula	[Ba(C5HN2O6)(C2O4)0.5(H2O)2]
M r	804.92
Crystal system, space group	Monoclinic, P21/c
Temperature (K)	296
a, b, c ()	10.3283(11), 7.9868(8), 13.0760(14)
()	96.419(2)
V (3)	1071.88(19)
Z	2
Radiation type	Mo K
(mm1)	3.76
Crystal size (mm)	0.16 0.12 0.03
Data collection
Diffractometer	Bruker APEXII CCD
Absorption correction	Multi-scan (SADABS; Bruker, 2004 ▸)
T min, T max	0.586, 0.746
No. of measured, independent and observed [I > 2(I)] reflections	11240, 3410, 2692
R int	0.036
(sin /)max (1)	0.736
Refinement
R[F 2 > 2(F 2)], wR(F 2), S	0.038, 0.093, 1.05
No. of reflections	3410
No. of parameters	172
No. of restraints	6
H-atom treatment	H-atom parameters constrained
max, min (e 3)	2.31, 1.67

Computer programs: APEX2 and SAINT (Bruker, 2004 ▸), SHELXS97 and SHELXTL (Sheldrick, 2008 ▸), SHELXL2013 (Sheldrick, 2015 ▸), ORTEP (Johnson Burnett, 1996 ▸) and Mercury (Macrae et al., 2008 ▸).

Supplementary Material

CCDC reference: 1057170

Additional supporting information: crystallographic information; 3D view; checkCIF report

supplementary crystallographic information

Crystal data

[Ba(C5HN2O6)(C2O4)0.5(H2O)2]	F(000) = 764
Mr = 804.92	Dx = 2.494 Mg m−3
Monoclinic, P21/c	Mo Kα radiation, λ = 0.71073 Å
a = 10.3283 (11) Å	Cell parameters from 3977 reflections
b = 7.9868 (8) Å	θ = 3.0–31.4°
c = 13.0760 (14) Å	µ = 3.76 mm−1
β = 96.419 (2)°	T = 296 K
V = 1071.88 (19) Å3	Plate, brown
Z = 2	0.16 × 0.12 × 0.03 mm

Data collection

Bruker APEXII CCD diffractometer	2692 reflections with I > 2σ(I)
Radiation source: sealed tube	Rint = 0.036
φ and ω scans	θmax = 31.5°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2004)	h = −15→14
Tmin = 0.586, Tmax = 0.746	k = −11→11
11240 measured reflections	l = −19→18
3410 independent reflections

Refinement

Refinement on F2	Primary atom site location: structure-invariant direct methods
Least-squares matrix: full	Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038	Hydrogen site location: mixed
wR(F2) = 0.093	H-atom parameters constrained
S = 1.05	w = 1/[σ2(Fo2) + (0.0492P)2 + 0.9998P] where P = (Fo2 + 2Fc2)/3
3410 reflections	(Δ/σ)max < 0.001
172 parameters	Δρmax = 2.31 e Å−3
6 restraints	Δρmin = −1.67 e Å−3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Ų)

	x	y	z	Uiso*/Ueq
Ba1	−0.00361 (2)	0.20711 (3)	0.69482 (2)	0.01991 (8)
O1	0.2105 (3)	−0.4097 (4)	0.6917 (3)	0.0343 (8)
O2	0.1678 (3)	−0.0830 (4)	0.6825 (3)	0.0295 (7)
O3	0.6026 (3)	−0.0297 (4)	0.6022 (3)	0.0344 (8)
O4	0.6113 (4)	−0.3626 (5)	0.5935 (4)	0.0489 (10)
O5	0.2660 (4)	0.2124 (5)	0.6490 (5)	0.0711 (16)
O6	0.4673 (4)	0.2379 (4)	0.6424 (4)	0.0446 (10)
O7	−0.0517 (3)	0.5240 (4)	0.6225 (2)	0.0259 (6)
O8	−0.0324 (4)	0.7141 (4)	0.5006 (3)	0.0380 (9)
O9	−0.1222 (3)	−0.0942 (4)	0.6412 (2)	0.0277 (7)
H2	−0.2018	−0.1018	0.6364	0.033*
H3	−0.1064	−0.1457	0.5898	0.033*
O10	−0.2582 (4)	0.2730 (5)	0.5886 (4)	0.0452 (10)
H4	−0.3231	0.2206	0.6007	0.054*
H5	−0.2776	0.3726	0.5862	0.054*
N1	0.4071 (3)	−0.3879 (4)	0.6348 (3)	0.0236 (7)
H1	0.4119	−0.4950	0.6295	0.028*
N2	0.3712 (4)	0.1478 (5)	0.6435 (3)	0.0258 (7)
C1	0.2940 (4)	−0.3217 (5)	0.6640 (3)	0.0211 (8)
C2	0.2754 (4)	−0.1295 (5)	0.6620 (3)	0.0196 (7)
C3	0.3832 (4)	−0.0309 (5)	0.6406 (3)	0.0201 (7)
C4	0.5038 (4)	−0.1026 (5)	0.6192 (3)	0.0217 (8)
C5	0.5130 (4)	−0.2959 (6)	0.6135 (4)	0.0250 (8)
C6	−0.0251 (4)	0.5680 (5)	0.5350 (3)	0.0218 (8)

Atomic displacement parameters (Ų)

	U11	U22	U33	U12	U13	U23
Ba1	0.02335 (13)	0.01750 (12)	0.01979 (12)	0.00255 (10)	0.00648 (8)	0.00287 (9)
O1	0.0313 (17)	0.0196 (16)	0.056 (2)	−0.0044 (13)	0.0208 (15)	0.0017 (14)
O2	0.0223 (15)	0.0213 (16)	0.048 (2)	0.0046 (12)	0.0156 (13)	0.0036 (13)
O3	0.0191 (15)	0.0244 (17)	0.061 (2)	−0.0021 (13)	0.0110 (14)	0.0034 (15)
O4	0.0296 (18)	0.0305 (19)	0.091 (3)	0.0069 (16)	0.0260 (19)	0.000 (2)
O5	0.037 (2)	0.026 (2)	0.157 (5)	0.0086 (17)	0.038 (3)	0.007 (2)
O6	0.0302 (18)	0.0179 (17)	0.087 (3)	−0.0070 (14)	0.0102 (19)	0.0005 (18)
O7	0.0408 (18)	0.0192 (14)	0.0193 (14)	0.0009 (13)	0.0101 (13)	−0.0011 (11)
O8	0.068 (3)	0.0215 (16)	0.0281 (17)	0.0077 (17)	0.0221 (17)	0.0028 (13)
O9	0.0241 (15)	0.0280 (16)	0.0318 (16)	0.0028 (13)	0.0063 (12)	−0.0083 (13)
O10	0.0294 (18)	0.032 (2)	0.072 (3)	−0.0050 (16)	−0.0021 (18)	0.0092 (18)
N1	0.0228 (17)	0.0139 (15)	0.035 (2)	0.0023 (13)	0.0096 (14)	0.0000 (14)
N2	0.0228 (17)	0.0192 (17)	0.036 (2)	0.0005 (14)	0.0066 (15)	0.0007 (15)
C1	0.0216 (19)	0.0184 (19)	0.0245 (19)	0.0014 (14)	0.0075 (15)	0.0000 (14)
C2	0.0198 (18)	0.0168 (18)	0.0227 (18)	0.0023 (15)	0.0049 (14)	0.0005 (15)
C3	0.0187 (18)	0.0146 (17)	0.027 (2)	−0.0003 (14)	0.0032 (15)	0.0012 (14)
C4	0.0191 (18)	0.0180 (18)	0.028 (2)	−0.0019 (15)	0.0043 (15)	0.0003 (15)
C5	0.0211 (19)	0.024 (2)	0.031 (2)	0.0023 (17)	0.0056 (16)	0.0027 (17)
C6	0.027 (2)	0.0183 (19)	0.0211 (19)	0.0020 (15)	0.0073 (15)	−0.0044 (14)

Geometric parameters (Å, º)

Ba1—O8i	2.698 (3)	O7—C6	1.257 (5)
Ba1—O7	2.728 (3)	O7—Ba1iii	2.805 (3)
Ba1—O9	2.755 (3)	O8—C6	1.250 (5)
Ba1—O7ii	2.805 (3)	O8—Ba1i	2.698 (3)
Ba1—O9iii	2.860 (3)	O9—Ba1ii	2.860 (3)
Ba1—O10	2.882 (4)	O9—H2	0.8200
Ba1—O1iii	2.889 (3)	O9—H3	0.8200
Ba1—O5	2.914 (4)	O10—H4	0.8201
Ba1—O2	2.931 (3)	O10—H5	0.8200
Ba1—O2iii	2.978 (3)	N1—C5	1.372 (5)
O1—C1	1.199 (5)	N1—C1	1.375 (5)
O1—Ba1ii	2.889 (3)	N1—H1	0.8600
O2—C2	1.229 (5)	N2—C3	1.433 (5)
O2—Ba1ii	2.978 (3)	C1—C2	1.547 (6)
O3—C4	1.217 (5)	C2—C3	1.417 (5)
O4—C5	1.202 (5)	C3—C4	1.427 (5)
O5—N2	1.212 (5)	C4—C5	1.549 (6)
O6—N2	1.227 (5)	C6—C6i	1.546 (8)
O8i—Ba1—O7	59.61 (9)	O2—Ba1—O2iii	149.14 (6)
O8i—Ba1—O9	93.86 (10)	C1—O1—Ba1ii	124.3 (3)
O7—Ba1—O9	131.58 (10)	C2—O2—Ba1	144.8 (3)
O8i—Ba1—O7ii	153.12 (10)	C2—O2—Ba1ii	122.0 (3)
O7—Ba1—O7ii	142.27 (8)	Ba1—O2—Ba1ii	91.81 (8)
O9—Ba1—O7ii	78.67 (9)	N2—O5—Ba1	152.8 (3)
O8i—Ba1—O9iii	118.77 (10)	C6—O7—Ba1	121.7 (3)
O7—Ba1—O9iii	78.16 (9)	C6—O7—Ba1iii	125.8 (3)
O9—Ba1—O9iii	145.81 (7)	Ba1—O7—Ba1iii	100.18 (9)
O7ii—Ba1—O9iii	67.59 (9)	C6—O8—Ba1i	123.3 (3)
O8i—Ba1—O10	73.50 (13)	Ba1—O9—Ba1ii	98.17 (9)
O7—Ba1—O10	62.78 (10)	Ba1—O9—H2	119.8
O9—Ba1—O10	71.41 (10)	Ba1ii—O9—H2	112.6
O7ii—Ba1—O10	126.42 (11)	Ba1—O9—H3	121.6
O9iii—Ba1—O10	125.00 (11)	Ba1ii—O9—H3	102.8
O8i—Ba1—O1iii	138.61 (12)	H2—O9—H3	100.9
O7—Ba1—O1iii	111.17 (9)	Ba1—O10—H4	122.3
O9—Ba1—O1iii	61.02 (9)	Ba1—O10—H5	113.6
O7ii—Ba1—O1iii	59.07 (10)	H4—O10—H5	107.6
O9iii—Ba1—O1iii	95.40 (9)	C5—N1—C1	124.8 (4)
O10—Ba1—O1iii	67.61 (11)	C5—N1—H1	117.6
O8i—Ba1—O5	64.24 (16)	C1—N1—H1	117.6
O7—Ba1—O5	93.23 (11)	O5—N2—O6	118.8 (4)
O9—Ba1—O5	111.61 (11)	O5—N2—C3	120.4 (4)
O7ii—Ba1—O5	94.27 (14)	O6—N2—C3	120.8 (4)
O9iii—Ba1—O5	77.39 (14)	O1—C1—N1	121.4 (4)
O10—Ba1—O5	137.72 (16)	O1—C1—C2	119.6 (4)
O1iii—Ba1—O5	152.77 (13)	N1—C1—C2	119.0 (3)
O8i—Ba1—O2	89.10 (10)	O2—C2—C3	128.6 (4)
O7—Ba1—O2	143.31 (9)	O2—C2—C1	114.2 (4)
O9—Ba1—O2	63.24 (9)	C3—C2—C1	117.1 (3)
O7ii—Ba1—O2	64.40 (9)	C2—C3—C4	122.6 (4)
O9iii—Ba1—O2	104.67 (9)	C2—C3—N2	118.4 (4)
O10—Ba1—O2	129.95 (11)	C4—C3—N2	119.0 (3)
O1iii—Ba1—O2	105.01 (9)	O3—C4—C3	127.7 (4)
O5—Ba1—O2	53.35 (10)	O3—C4—C5	114.3 (4)
O8i—Ba1—O2iii	121.74 (10)	C3—C4—C5	117.9 (3)
O7—Ba1—O2iii	64.65 (9)	O4—C5—N1	121.2 (4)
O9—Ba1—O2iii	111.41 (8)	O4—C5—C4	120.7 (4)
O7ii—Ba1—O2iii	84.77 (9)	N1—C5—C4	118.0 (3)
O9iii—Ba1—O2iii	61.45 (9)	O8—C6—O7	125.3 (4)
O10—Ba1—O2iii	67.23 (11)	O8—C6—C6i	117.0 (5)
O1iii—Ba1—O2iii	53.60 (8)	O7—C6—C6i	117.7 (5)
O5—Ba1—O2iii	135.85 (12)

Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x, y−1/2, −z+3/2; (iii) −x, y+1/2, −z+3/2.

Hydrogen-bond geometry (Å, º)

D—H···A	D—H	H···A	D···A	D—H···A
N1—H1···O6iv	0.86	2.21	3.052 (5)	166
O9—H2···O3v	0.82	2.10	2.877 (4)	158
O9—H3···O8iv	0.82	1.84	2.639 (4)	163
O10—H4···O3v	0.82	2.14	2.828 (5)	141
O10—H4···O6v	0.82	2.30	3.010 (5)	146
O10—H5···O4vi	0.82	2.41	3.210 (5)	165

Symmetry codes: (iv) x, y−1, z; (v) x−1, y, z; (vi) x−1, y+1, z.