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Acta Crystallographica Section E: Crystallographic Communications logoLink to Acta Crystallographica Section E: Crystallographic Communications
. 2015 May 23;71(Pt 6):o417. doi: 10.1107/S205698901500938X

Crystal structure of 4-amino-3-(3-methyl-5-phenyl-1H-pyrazol-1-yl)-1H-1,2,4-triazole-5(4H)-thione

Joel T Mague a, Shaaban K Mohamed b,c, Mehmet Akkurt d, Mustafa R Albayati e,*
PMCID: PMC4459321  PMID: 26090200

Abstract

In the title compound, C12H12N6S, the dihedral angles between the central pyrazole ring and the pendant triazole and benzene rings are 68.01 (4) and 59.83 (9)°, respectively. In the crystal, mol­ecules are linked by N—H⋯N and N—H⋯S hydrogen bonds, generating (10-1) sheets.

Keywords: crystal structure, amino­triazoles, hydrogen bonding

Related literature  

For the bio-activities of amino­triazoles, see: Jin et al. (2007); Joung et al. (2000). For amino­triazoles as block-building synthons, see: Curtis (2004).graphic file with name e-71-0o417-scheme1.jpg

Experimental  

Crystal data  

  • C12H12N6S

  • M r = 272.34

  • Monoclinic, Inline graphic

  • a = 11.3278 (4) Å

  • b = 8.3970 (3) Å

  • c = 15.4427 (5) Å

  • β = 109.053 (1)°

  • V = 1388.43 (8) Å3

  • Z = 4

  • Cu Kα radiation

  • μ = 2.04 mm−1

  • T = 150 K

  • 0.24 × 0.18 × 0.10 mm

Data collection  

  • Bruker D8 VENTURE PHOTON 100 CMOS diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2014) T min = 0.77, T max = 0.82

  • 10355 measured reflections

  • 2683 independent reflections

  • 2515 reflections with I > 2σ(I)

  • R int = 0.021

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.036

  • wR(F 2) = 0.102

  • S = 1.09

  • 2683 reflections

  • 173 parameters

  • H-atom parameters constrained

  • Δρmax = 0.36 e Å−3

  • Δρmin = −0.28 e Å−3

Data collection: APEX2 (Bruker, 2014); cell refinement: SAINT (Bruker, 2014); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2015a ); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b ); molecular graphics: DIAMOND (Brandenburg & Putz, 2012); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S205698901500938X/hb7427sup1.cif

e-71-0o417-sup1.cif (326.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901500938X/hb7427Isup2.hkl

e-71-0o417-Isup2.hkl (147.5KB, hkl)

Supporting information file. DOI: 10.1107/S205698901500938X/hb7427Isup3.cml

. DOI: 10.1107/S205698901500938X/hb7427fig1.tif

The title mol­ecule showing labeling scheme and 50% probability ellipsoids.

b . DOI: 10.1107/S205698901500938X/hb7427fig2.tif

Packing viewed down the b axis. N—H⋯N and N—H⋯S hydrogen bonds are shown, respectively, as blue and purple dotted lines.

CCDC reference: 1401505

Additional supporting information: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (, ).

DHA DH HA D A DHA
N3H3AN1i 0.91 1.94 2.8429(17) 169
N6H6AS1ii 0.91 2.55 3.4157(13) 159
N6H6BN4iii 0.91 2.43 3.0059(18) 122

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The support of NSF–MRI grant No. 1228232 for the purchase of the diffractometer and Tulane University for support of the Tulane Crystallography Laboratory are gratefully acknowledged.

supplementary crystallographic information

S1. Comment

Amino-1,2,4-triazoles are known to be biologically active compounds (Jin et al., 2007). For example, the 5-amino-1,2,4- triazole itself has been used as the pesticide Amitrole (Joung et al., 2000) and 3,5-diamino-1,2,4-triazole (Guanazole) is an antitumor drug that inhibits ribonucleotide reductase and DNA synthesis. In addition, they play an important role as amidine type synthons in heterocyclic chemistry (Curtis, 2004) particularly fused ring systems, such as imidazo[1,2-b][1,2,4]triazole, imidazo[2,1-c][1,2,4]triazole, 1,2,4-triazolo[1,5-a]pyrimidine and 1,2,4-traizolo[1,5-a][1,3,5]triazine possessing variety of biological effects. In this context, we report in this study the synthesis and crystal structure of the title compound.

In the title compound (Fig. 1), the dihedral angle between the central 5-membered ring and its attached phenyl ring is 59.83 (5)° while the dihedral angle between the two 5-membered rings is 68.01 (4)°. In the crystal, the molecules form sheets lying parallel to (101) through N—H···N and N—H···S hydrogen bonds (Fig. 2 and Table 1).

S2. Experimental

A mixture of 1 mmol (258 mg) of 5-(3-methyl-5-phenyl-1H-pyrazol-1-yl)-1,3,4-oxadiazole-2(3H)-thione and 2 ml of hydrazine in 30 ml ethanol was heated at 351 K for 6 h. On cooling, the solid product was filtered off, dried under vacuum and recrystallized from ethanol to afford colorless blocks of the title compound.

S3. Refinement

H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 - 0.98 Å) while those attached to nitrogen were placed in locations derived from a difference map and their parameters adjusted to give N—H = 0.91 Å. All were included as riding contributions with isotropic displacement parameters 1.2 - 1.5 times those of the attached atoms.

Figures

Fig. 1.

Fig. 1.

The title molecule showing labeling scheme and 50% probability ellipsoids.

Fig. 2.

Fig. 2.

Packing viewed down the b axis. N—H···N and N—H···S hydrogen bonds are shown, respectively, as blue and purple dotted lines.

Crystal data

C12H12N6S F(000) = 568
Mr = 272.34 Dx = 1.303 Mg m3
Monoclinic, P21/n Cu Kα radiation, λ = 1.54178 Å
a = 11.3278 (4) Å Cell parameters from 8668 reflections
b = 8.3970 (3) Å θ = 4.3–72.3°
c = 15.4427 (5) Å µ = 2.04 mm1
β = 109.053 (1)° T = 150 K
V = 1388.43 (8) Å3 Block, colourless
Z = 4 0.24 × 0.18 × 0.10 mm

Data collection

Bruker D8 VENTURE PHOTON 100 CMOS diffractometer 2683 independent reflections
Radiation source: INCOATEC IµS micro-focus source 2515 reflections with I > 2σ(I)
Mirror monochromator Rint = 0.021
Detector resolution: 10.4167 pixels mm-1 θmax = 72.3°, θmin = 4.2°
ω scans h = −13→13
Absorption correction: multi-scan (SADABS; Bruker, 2014) k = −9→10
Tmin = 0.77, Tmax = 0.82 l = −19→19
10355 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036 Hydrogen site location: mixed
wR(F2) = 0.102 H-atom parameters constrained
S = 1.09 w = 1/[σ2(Fo2) + (0.0581P)2 + 0.5187P] where P = (Fo2 + 2Fc2)/3
2683 reflections (Δ/σ)max = 0.002
173 parameters Δρmax = 0.36 e Å3
0 restraints Δρmin = −0.28 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. H-atoms attached to carbonwere placed in calculated positions (C—H = 0.95 - 0.98 Å) while thoseattached to nitrogen were placed in locations derived from a differencemap and their parameters adjusted to give N—H = 0.91 Å. All wereincluded as riding contributions with isotropic displacementparameters 1.2 - 1.5 times those of the attached atoms.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 1.06212 (3) 0.49379 (4) 0.36297 (2) 0.02864 (14)
N1 0.52909 (11) 0.54447 (14) 0.29113 (8) 0.0249 (3)
N2 0.60148 (11) 0.41615 (13) 0.33081 (8) 0.0235 (3)
N3 0.86566 (11) 0.29657 (15) 0.28254 (8) 0.0263 (3)
H3A 0.9039 0.2256 0.2559 0.032*
N4 0.74091 (11) 0.27516 (15) 0.27154 (9) 0.0273 (3)
N5 0.81912 (11) 0.48358 (13) 0.35855 (8) 0.0205 (3)
N6 0.81859 (11) 0.61690 (14) 0.41236 (8) 0.0262 (3)
H6A 0.8704 0.5948 0.4699 0.031*
H6B 0.8512 0.6973 0.3878 0.031*
C1 0.60875 (14) 0.17810 (17) 0.42641 (9) 0.0251 (3)
C2 0.72215 (17) 0.1972 (2) 0.49645 (11) 0.0399 (4)
H2 0.7559 0.3009 0.5120 0.048*
C3 0.78631 (19) 0.0666 (2) 0.54370 (13) 0.0469 (5)
H3 0.8636 0.0807 0.5914 0.056*
C4 0.73738 (18) −0.0845 (2) 0.52122 (12) 0.0392 (4)
H4 0.7808 −0.1744 0.5538 0.047*
C5 0.62567 (16) −0.10472 (18) 0.45161 (11) 0.0344 (4)
H5 0.5927 −0.2088 0.4362 0.041*
C6 0.56078 (15) 0.02533 (18) 0.40384 (11) 0.0292 (3)
H6 0.4839 0.0102 0.3559 0.035*
C7 0.54349 (13) 0.31865 (17) 0.37531 (9) 0.0239 (3)
C8 0.43020 (14) 0.38690 (19) 0.36366 (10) 0.0287 (3)
H8 0.3670 0.3482 0.3862 0.034*
C9 0.42509 (14) 0.52643 (18) 0.31143 (10) 0.0262 (3)
C10 0.71675 (13) 0.39120 (16) 0.31857 (9) 0.0218 (3)
C11 0.91672 (13) 0.42285 (16) 0.33429 (9) 0.0222 (3)
C12 0.32313 (15) 0.6470 (2) 0.28071 (13) 0.0386 (4)
H12A 0.3481 0.7316 0.2466 0.058*
H12B 0.3074 0.6928 0.3343 0.058*
H12C 0.2469 0.5957 0.2411 0.058*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0210 (2) 0.0357 (2) 0.0290 (2) −0.00344 (13) 0.00779 (15) −0.00294 (13)
N1 0.0233 (6) 0.0232 (6) 0.0304 (6) 0.0020 (5) 0.0120 (5) 0.0040 (5)
N2 0.0235 (6) 0.0206 (6) 0.0301 (6) 0.0012 (4) 0.0136 (5) 0.0031 (4)
N3 0.0235 (6) 0.0263 (6) 0.0330 (6) −0.0013 (5) 0.0145 (5) −0.0075 (5)
N4 0.0242 (6) 0.0270 (6) 0.0340 (6) −0.0030 (5) 0.0141 (5) −0.0049 (5)
N5 0.0224 (6) 0.0193 (5) 0.0210 (5) 0.0013 (4) 0.0088 (5) −0.0009 (4)
N6 0.0311 (7) 0.0225 (6) 0.0248 (6) 0.0018 (5) 0.0089 (5) −0.0048 (4)
C1 0.0288 (7) 0.0241 (7) 0.0251 (7) −0.0021 (5) 0.0125 (6) 0.0010 (5)
C2 0.0459 (10) 0.0302 (8) 0.0355 (8) −0.0082 (7) 0.0019 (7) 0.0026 (6)
C3 0.0468 (11) 0.0443 (10) 0.0382 (9) −0.0008 (8) −0.0018 (8) 0.0085 (8)
C4 0.0500 (10) 0.0327 (9) 0.0369 (8) 0.0094 (7) 0.0168 (7) 0.0099 (6)
C5 0.0477 (10) 0.0223 (7) 0.0372 (8) 0.0004 (6) 0.0195 (7) −0.0018 (6)
C6 0.0316 (8) 0.0262 (7) 0.0313 (8) −0.0027 (6) 0.0122 (6) −0.0033 (6)
C7 0.0258 (7) 0.0230 (7) 0.0242 (6) −0.0061 (5) 0.0101 (5) −0.0012 (5)
C8 0.0246 (7) 0.0313 (8) 0.0333 (7) −0.0045 (6) 0.0136 (6) 0.0045 (6)
C9 0.0223 (7) 0.0283 (7) 0.0294 (7) −0.0019 (5) 0.0104 (6) 0.0014 (6)
C10 0.0217 (7) 0.0208 (6) 0.0242 (6) 0.0001 (5) 0.0094 (5) 0.0018 (5)
C11 0.0244 (7) 0.0229 (7) 0.0207 (6) 0.0014 (5) 0.0091 (5) 0.0014 (5)
C12 0.0262 (8) 0.0422 (9) 0.0521 (10) 0.0079 (7) 0.0193 (7) 0.0143 (8)

Geometric parameters (Å, º)

S1—C11 1.6697 (14) C2—C3 1.384 (2)
N1—C9 1.3230 (19) C2—H2 0.9500
N1—N2 1.3714 (16) C3—C4 1.383 (3)
N2—C7 1.3670 (18) C3—H3 0.9500
N2—C10 1.3949 (18) C4—C5 1.377 (3)
N3—C11 1.3401 (18) C4—H4 0.9500
N3—N4 1.3790 (17) C5—C6 1.387 (2)
N3—H3A 0.9100 C5—H5 0.9500
N4—C10 1.2968 (18) C6—H6 0.9500
N5—C10 1.3639 (18) C7—C8 1.363 (2)
N5—C11 1.3759 (17) C8—C9 1.413 (2)
N5—N6 1.3953 (15) C8—H8 0.9500
N6—H6A 0.9101 C9—C12 1.492 (2)
N6—H6B 0.9099 C12—H12A 0.9800
C1—C2 1.392 (2) C12—H12B 0.9800
C1—C6 1.392 (2) C12—H12C 0.9800
C1—C7 1.477 (2)
C9—N1—N2 104.65 (11) C4—C5—H5 119.6
C7—N2—N1 112.32 (11) C6—C5—H5 119.6
C7—N2—C10 127.07 (12) C5—C6—C1 119.77 (15)
N1—N2—C10 120.47 (11) C5—C6—H6 120.1
C11—N3—N4 113.70 (11) C1—C6—H6 120.1
C11—N3—H3A 127.7 C8—C7—N2 105.56 (12)
N4—N3—H3A 118.6 C8—C7—C1 133.80 (13)
C10—N4—N3 103.20 (11) N2—C7—C1 120.55 (12)
C10—N5—C11 107.82 (11) C7—C8—C9 106.58 (12)
C10—N5—N6 123.89 (11) C7—C8—H8 126.7
C11—N5—N6 128.28 (12) C9—C8—H8 126.7
N5—N6—H6A 107.0 N1—C9—C8 110.89 (13)
N5—N6—H6B 105.4 N1—C9—C12 120.25 (13)
H6A—N6—H6B 109.8 C8—C9—C12 128.85 (14)
C2—C1—C6 119.08 (14) N4—C10—N5 112.16 (12)
C2—C1—C7 119.82 (13) N4—C10—N2 124.53 (13)
C6—C1—C7 121.07 (13) N5—C10—N2 123.26 (12)
C3—C2—C1 120.73 (16) N3—C11—N5 103.12 (11)
C3—C2—H2 119.6 N3—C11—S1 129.55 (11)
C1—C2—H2 119.6 N5—C11—S1 127.32 (11)
C4—C3—C2 119.73 (16) C9—C12—H12A 109.5
C4—C3—H3 120.1 C9—C12—H12B 109.5
C2—C3—H3 120.1 H12A—C12—H12B 109.5
C5—C4—C3 119.98 (16) C9—C12—H12C 109.5
C5—C4—H4 120.0 H12A—C12—H12C 109.5
C3—C4—H4 120.0 H12B—C12—H12C 109.5
C4—C5—C6 120.70 (15)
C9—N1—N2—C7 0.12 (16) N2—N1—C9—C8 −0.21 (16)
C9—N1—N2—C10 176.19 (12) N2—N1—C9—C12 178.88 (14)
C11—N3—N4—C10 −0.45 (16) C7—C8—C9—N1 0.23 (18)
C6—C1—C2—C3 −0.5 (3) C7—C8—C9—C12 −178.76 (16)
C7—C1—C2—C3 −178.43 (16) N3—N4—C10—N5 −0.20 (15)
C1—C2—C3—C4 0.0 (3) N3—N4—C10—N2 −177.56 (12)
C2—C3—C4—C5 0.5 (3) C11—N5—C10—N4 0.75 (15)
C3—C4—C5—C6 −0.4 (3) N6—N5—C10—N4 179.53 (12)
C4—C5—C6—C1 −0.1 (2) C11—N5—C10—N2 178.15 (12)
C2—C1—C6—C5 0.5 (2) N6—N5—C10—N2 −3.1 (2)
C7—C1—C6—C5 178.45 (13) C7—N2—C10—N4 64.2 (2)
N1—N2—C7—C8 0.02 (16) N1—N2—C10—N4 −111.26 (16)
C10—N2—C7—C8 −175.74 (13) C7—N2—C10—N5 −112.89 (16)
N1—N2—C7—C1 −176.94 (12) N1—N2—C10—N5 71.66 (18)
C10—N2—C7—C1 7.3 (2) N4—N3—C11—N5 0.88 (15)
C2—C1—C7—C8 −118.65 (19) N4—N3—C11—S1 −178.60 (11)
C6—C1—C7—C8 63.4 (2) C10—N5—C11—N3 −0.94 (14)
C2—C1—C7—N2 57.3 (2) N6—N5—C11—N3 −179.65 (12)
C6—C1—C7—N2 −120.64 (15) C10—N5—C11—S1 178.55 (10)
N2—C7—C8—C9 −0.14 (16) N6—N5—C11—S1 −0.2 (2)
C1—C7—C8—C9 176.23 (15)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N3—H3A···N1i 0.91 1.94 2.8429 (17) 169
N6—H6A···S1ii 0.91 2.55 3.4157 (13) 159
N6—H6B···N4iii 0.91 2.43 3.0059 (18) 122

Symmetry codes: (i) −x+3/2, y−1/2, −z+1/2; (ii) −x+2, −y+1, −z+1; (iii) −x+3/2, y+1/2, −z+1/2.

Footnotes

Supporting information for this paper is available from the IUCr electronic archives (Reference: HB7427).

References

  1. Brandenburg, K. & Putz, H. (2012). DIAMOND. Crystal Impact GbR, Bonn, Germany.
  2. Bruker (2014). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Curtis, A. D. M. (2004). Science of Synthesis, 13, 603–639.
  4. Jin, J.-Y., Zhang, L.-X., Zhang, A.-J., Lei, X.-X. & Zhu, J.-H. (2007). Molecules, 12, 1596–1605. [DOI] [PMC free article] [PubMed]
  5. Joung, J. K. E. I., Ramm, E. I. & Pabo, C. O. (2000). Proc. Natl Acad. Sci. USA, 97, 7382–7387. [DOI] [PMC free article] [PubMed]
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.
  8. Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S205698901500938X/hb7427sup1.cif

e-71-0o417-sup1.cif (326.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901500938X/hb7427Isup2.hkl

e-71-0o417-Isup2.hkl (147.5KB, hkl)

Supporting information file. DOI: 10.1107/S205698901500938X/hb7427Isup3.cml

. DOI: 10.1107/S205698901500938X/hb7427fig1.tif

The title mol­ecule showing labeling scheme and 50% probability ellipsoids.

b . DOI: 10.1107/S205698901500938X/hb7427fig2.tif

Packing viewed down the b axis. N—H⋯N and N—H⋯S hydrogen bonds are shown, respectively, as blue and purple dotted lines.

CCDC reference: 1401505

Additional supporting information: crystallographic information; 3D view; checkCIF report


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