Abstract
In the title compound, C12H12N6S, the dihedral angles between the central pyrazole ring and the pendant triazole and benzene rings are 68.01 (4) and 59.83 (9)°, respectively. In the crystal, molecules are linked by N—H⋯N and N—H⋯S hydrogen bonds, generating (10-1) sheets.
Keywords: crystal structure, aminotriazoles, hydrogen bonding
Related literature
For the bio-activities of aminotriazoles, see: Jin et al. (2007 ▸); Joung et al. (2000 ▸). For aminotriazoles as block-building synthons, see: Curtis (2004 ▸).
Experimental
Crystal data
C12H12N6S
M r = 272.34
Monoclinic,
a = 11.3278 (4) Å
b = 8.3970 (3) Å
c = 15.4427 (5) Å
β = 109.053 (1)°
V = 1388.43 (8) Å3
Z = 4
Cu Kα radiation
μ = 2.04 mm−1
T = 150 K
0.24 × 0.18 × 0.10 mm
Data collection
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2014 ▸) T min = 0.77, T max = 0.82
10355 measured reflections
2683 independent reflections
2515 reflections with I > 2σ(I)
R int = 0.021
Refinement
R[F 2 > 2σ(F 2)] = 0.036
wR(F 2) = 0.102
S = 1.09
2683 reflections
173 parameters
H-atom parameters constrained
Δρmax = 0.36 e Å−3
Δρmin = −0.28 e Å−3
Data collection: APEX2 (Bruker, 2014 ▸); cell refinement: SAINT (Bruker, 2014 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2015a ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b ▸); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▸); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▸).
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S205698901500938X/hb7427sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901500938X/hb7427Isup2.hkl
Supporting information file. DOI: 10.1107/S205698901500938X/hb7427Isup3.cml
. DOI: 10.1107/S205698901500938X/hb7427fig1.tif
The title molecule showing labeling scheme and 50% probability ellipsoids.
b . DOI: 10.1107/S205698901500938X/hb7427fig2.tif
Packing viewed down the b axis. N—H⋯N and N—H⋯S hydrogen bonds are shown, respectively, as blue and purple dotted lines.
CCDC reference: 1401505
Additional supporting information: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (, ).
| DHA | DH | HA | D A | DHA |
|---|---|---|---|---|
| N3H3AN1i | 0.91 | 1.94 | 2.8429(17) | 169 |
| N6H6AS1ii | 0.91 | 2.55 | 3.4157(13) | 159 |
| N6H6BN4iii | 0.91 | 2.43 | 3.0059(18) | 122 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
The support of NSF–MRI grant No. 1228232 for the purchase of the diffractometer and Tulane University for support of the Tulane Crystallography Laboratory are gratefully acknowledged.
supplementary crystallographic information
S1. Comment
Amino-1,2,4-triazoles are known to be biologically active compounds (Jin et al., 2007). For example, the 5-amino-1,2,4- triazole itself has been used as the pesticide Amitrole (Joung et al., 2000) and 3,5-diamino-1,2,4-triazole (Guanazole) is an antitumor drug that inhibits ribonucleotide reductase and DNA synthesis. In addition, they play an important role as amidine type synthons in heterocyclic chemistry (Curtis, 2004) particularly fused ring systems, such as imidazo[1,2-b][1,2,4]triazole, imidazo[2,1-c][1,2,4]triazole, 1,2,4-triazolo[1,5-a]pyrimidine and 1,2,4-traizolo[1,5-a][1,3,5]triazine possessing variety of biological effects. In this context, we report in this study the synthesis and crystal structure of the title compound.
In the title compound (Fig. 1), the dihedral angle between the central 5-membered ring and its attached phenyl ring is 59.83 (5)° while the dihedral angle between the two 5-membered rings is 68.01 (4)°. In the crystal, the molecules form sheets lying parallel to (101) through N—H···N and N—H···S hydrogen bonds (Fig. 2 and Table 1).
S2. Experimental
A mixture of 1 mmol (258 mg) of 5-(3-methyl-5-phenyl-1H-pyrazol-1-yl)-1,3,4-oxadiazole-2(3H)-thione and 2 ml of hydrazine in 30 ml ethanol was heated at 351 K for 6 h. On cooling, the solid product was filtered off, dried under vacuum and recrystallized from ethanol to afford colorless blocks of the title compound.
S3. Refinement
H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 - 0.98 Å) while those attached to nitrogen were placed in locations derived from a difference map and their parameters adjusted to give N—H = 0.91 Å. All were included as riding contributions with isotropic displacement parameters 1.2 - 1.5 times those of the attached atoms.
Figures
Fig. 1.

The title molecule showing labeling scheme and 50% probability ellipsoids.
Fig. 2.

Packing viewed down the b axis. N—H···N and N—H···S hydrogen bonds are shown, respectively, as blue and purple dotted lines.
Crystal data
| C12H12N6S | F(000) = 568 |
| Mr = 272.34 | Dx = 1.303 Mg m−3 |
| Monoclinic, P21/n | Cu Kα radiation, λ = 1.54178 Å |
| a = 11.3278 (4) Å | Cell parameters from 8668 reflections |
| b = 8.3970 (3) Å | θ = 4.3–72.3° |
| c = 15.4427 (5) Å | µ = 2.04 mm−1 |
| β = 109.053 (1)° | T = 150 K |
| V = 1388.43 (8) Å3 | Block, colourless |
| Z = 4 | 0.24 × 0.18 × 0.10 mm |
Data collection
| Bruker D8 VENTURE PHOTON 100 CMOS diffractometer | 2683 independent reflections |
| Radiation source: INCOATEC IµS micro-focus source | 2515 reflections with I > 2σ(I) |
| Mirror monochromator | Rint = 0.021 |
| Detector resolution: 10.4167 pixels mm-1 | θmax = 72.3°, θmin = 4.2° |
| ω scans | h = −13→13 |
| Absorption correction: multi-scan (SADABS; Bruker, 2014) | k = −9→10 |
| Tmin = 0.77, Tmax = 0.82 | l = −19→19 |
| 10355 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: mixed |
| wR(F2) = 0.102 | H-atom parameters constrained |
| S = 1.09 | w = 1/[σ2(Fo2) + (0.0581P)2 + 0.5187P] where P = (Fo2 + 2Fc2)/3 |
| 2683 reflections | (Δ/σ)max = 0.002 |
| 173 parameters | Δρmax = 0.36 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. H-atoms attached to carbonwere placed in calculated positions (C—H = 0.95 - 0.98 Å) while thoseattached to nitrogen were placed in locations derived from a differencemap and their parameters adjusted to give N—H = 0.91 Å. All wereincluded as riding contributions with isotropic displacementparameters 1.2 - 1.5 times those of the attached atoms. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 1.06212 (3) | 0.49379 (4) | 0.36297 (2) | 0.02864 (14) | |
| N1 | 0.52909 (11) | 0.54447 (14) | 0.29113 (8) | 0.0249 (3) | |
| N2 | 0.60148 (11) | 0.41615 (13) | 0.33081 (8) | 0.0235 (3) | |
| N3 | 0.86566 (11) | 0.29657 (15) | 0.28254 (8) | 0.0263 (3) | |
| H3A | 0.9039 | 0.2256 | 0.2559 | 0.032* | |
| N4 | 0.74091 (11) | 0.27516 (15) | 0.27154 (9) | 0.0273 (3) | |
| N5 | 0.81912 (11) | 0.48358 (13) | 0.35855 (8) | 0.0205 (3) | |
| N6 | 0.81859 (11) | 0.61690 (14) | 0.41236 (8) | 0.0262 (3) | |
| H6A | 0.8704 | 0.5948 | 0.4699 | 0.031* | |
| H6B | 0.8512 | 0.6973 | 0.3878 | 0.031* | |
| C1 | 0.60875 (14) | 0.17810 (17) | 0.42641 (9) | 0.0251 (3) | |
| C2 | 0.72215 (17) | 0.1972 (2) | 0.49645 (11) | 0.0399 (4) | |
| H2 | 0.7559 | 0.3009 | 0.5120 | 0.048* | |
| C3 | 0.78631 (19) | 0.0666 (2) | 0.54370 (13) | 0.0469 (5) | |
| H3 | 0.8636 | 0.0807 | 0.5914 | 0.056* | |
| C4 | 0.73738 (18) | −0.0845 (2) | 0.52122 (12) | 0.0392 (4) | |
| H4 | 0.7808 | −0.1744 | 0.5538 | 0.047* | |
| C5 | 0.62567 (16) | −0.10472 (18) | 0.45161 (11) | 0.0344 (4) | |
| H5 | 0.5927 | −0.2088 | 0.4362 | 0.041* | |
| C6 | 0.56078 (15) | 0.02533 (18) | 0.40384 (11) | 0.0292 (3) | |
| H6 | 0.4839 | 0.0102 | 0.3559 | 0.035* | |
| C7 | 0.54349 (13) | 0.31865 (17) | 0.37531 (9) | 0.0239 (3) | |
| C8 | 0.43020 (14) | 0.38690 (19) | 0.36366 (10) | 0.0287 (3) | |
| H8 | 0.3670 | 0.3482 | 0.3862 | 0.034* | |
| C9 | 0.42509 (14) | 0.52643 (18) | 0.31143 (10) | 0.0262 (3) | |
| C10 | 0.71675 (13) | 0.39120 (16) | 0.31857 (9) | 0.0218 (3) | |
| C11 | 0.91672 (13) | 0.42285 (16) | 0.33429 (9) | 0.0222 (3) | |
| C12 | 0.32313 (15) | 0.6470 (2) | 0.28071 (13) | 0.0386 (4) | |
| H12A | 0.3481 | 0.7316 | 0.2466 | 0.058* | |
| H12B | 0.3074 | 0.6928 | 0.3343 | 0.058* | |
| H12C | 0.2469 | 0.5957 | 0.2411 | 0.058* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0210 (2) | 0.0357 (2) | 0.0290 (2) | −0.00344 (13) | 0.00779 (15) | −0.00294 (13) |
| N1 | 0.0233 (6) | 0.0232 (6) | 0.0304 (6) | 0.0020 (5) | 0.0120 (5) | 0.0040 (5) |
| N2 | 0.0235 (6) | 0.0206 (6) | 0.0301 (6) | 0.0012 (4) | 0.0136 (5) | 0.0031 (4) |
| N3 | 0.0235 (6) | 0.0263 (6) | 0.0330 (6) | −0.0013 (5) | 0.0145 (5) | −0.0075 (5) |
| N4 | 0.0242 (6) | 0.0270 (6) | 0.0340 (6) | −0.0030 (5) | 0.0141 (5) | −0.0049 (5) |
| N5 | 0.0224 (6) | 0.0193 (5) | 0.0210 (5) | 0.0013 (4) | 0.0088 (5) | −0.0009 (4) |
| N6 | 0.0311 (7) | 0.0225 (6) | 0.0248 (6) | 0.0018 (5) | 0.0089 (5) | −0.0048 (4) |
| C1 | 0.0288 (7) | 0.0241 (7) | 0.0251 (7) | −0.0021 (5) | 0.0125 (6) | 0.0010 (5) |
| C2 | 0.0459 (10) | 0.0302 (8) | 0.0355 (8) | −0.0082 (7) | 0.0019 (7) | 0.0026 (6) |
| C3 | 0.0468 (11) | 0.0443 (10) | 0.0382 (9) | −0.0008 (8) | −0.0018 (8) | 0.0085 (8) |
| C4 | 0.0500 (10) | 0.0327 (9) | 0.0369 (8) | 0.0094 (7) | 0.0168 (7) | 0.0099 (6) |
| C5 | 0.0477 (10) | 0.0223 (7) | 0.0372 (8) | 0.0004 (6) | 0.0195 (7) | −0.0018 (6) |
| C6 | 0.0316 (8) | 0.0262 (7) | 0.0313 (8) | −0.0027 (6) | 0.0122 (6) | −0.0033 (6) |
| C7 | 0.0258 (7) | 0.0230 (7) | 0.0242 (6) | −0.0061 (5) | 0.0101 (5) | −0.0012 (5) |
| C8 | 0.0246 (7) | 0.0313 (8) | 0.0333 (7) | −0.0045 (6) | 0.0136 (6) | 0.0045 (6) |
| C9 | 0.0223 (7) | 0.0283 (7) | 0.0294 (7) | −0.0019 (5) | 0.0104 (6) | 0.0014 (6) |
| C10 | 0.0217 (7) | 0.0208 (6) | 0.0242 (6) | 0.0001 (5) | 0.0094 (5) | 0.0018 (5) |
| C11 | 0.0244 (7) | 0.0229 (7) | 0.0207 (6) | 0.0014 (5) | 0.0091 (5) | 0.0014 (5) |
| C12 | 0.0262 (8) | 0.0422 (9) | 0.0521 (10) | 0.0079 (7) | 0.0193 (7) | 0.0143 (8) |
Geometric parameters (Å, º)
| S1—C11 | 1.6697 (14) | C2—C3 | 1.384 (2) |
| N1—C9 | 1.3230 (19) | C2—H2 | 0.9500 |
| N1—N2 | 1.3714 (16) | C3—C4 | 1.383 (3) |
| N2—C7 | 1.3670 (18) | C3—H3 | 0.9500 |
| N2—C10 | 1.3949 (18) | C4—C5 | 1.377 (3) |
| N3—C11 | 1.3401 (18) | C4—H4 | 0.9500 |
| N3—N4 | 1.3790 (17) | C5—C6 | 1.387 (2) |
| N3—H3A | 0.9100 | C5—H5 | 0.9500 |
| N4—C10 | 1.2968 (18) | C6—H6 | 0.9500 |
| N5—C10 | 1.3639 (18) | C7—C8 | 1.363 (2) |
| N5—C11 | 1.3759 (17) | C8—C9 | 1.413 (2) |
| N5—N6 | 1.3953 (15) | C8—H8 | 0.9500 |
| N6—H6A | 0.9101 | C9—C12 | 1.492 (2) |
| N6—H6B | 0.9099 | C12—H12A | 0.9800 |
| C1—C2 | 1.392 (2) | C12—H12B | 0.9800 |
| C1—C6 | 1.392 (2) | C12—H12C | 0.9800 |
| C1—C7 | 1.477 (2) | ||
| C9—N1—N2 | 104.65 (11) | C4—C5—H5 | 119.6 |
| C7—N2—N1 | 112.32 (11) | C6—C5—H5 | 119.6 |
| C7—N2—C10 | 127.07 (12) | C5—C6—C1 | 119.77 (15) |
| N1—N2—C10 | 120.47 (11) | C5—C6—H6 | 120.1 |
| C11—N3—N4 | 113.70 (11) | C1—C6—H6 | 120.1 |
| C11—N3—H3A | 127.7 | C8—C7—N2 | 105.56 (12) |
| N4—N3—H3A | 118.6 | C8—C7—C1 | 133.80 (13) |
| C10—N4—N3 | 103.20 (11) | N2—C7—C1 | 120.55 (12) |
| C10—N5—C11 | 107.82 (11) | C7—C8—C9 | 106.58 (12) |
| C10—N5—N6 | 123.89 (11) | C7—C8—H8 | 126.7 |
| C11—N5—N6 | 128.28 (12) | C9—C8—H8 | 126.7 |
| N5—N6—H6A | 107.0 | N1—C9—C8 | 110.89 (13) |
| N5—N6—H6B | 105.4 | N1—C9—C12 | 120.25 (13) |
| H6A—N6—H6B | 109.8 | C8—C9—C12 | 128.85 (14) |
| C2—C1—C6 | 119.08 (14) | N4—C10—N5 | 112.16 (12) |
| C2—C1—C7 | 119.82 (13) | N4—C10—N2 | 124.53 (13) |
| C6—C1—C7 | 121.07 (13) | N5—C10—N2 | 123.26 (12) |
| C3—C2—C1 | 120.73 (16) | N3—C11—N5 | 103.12 (11) |
| C3—C2—H2 | 119.6 | N3—C11—S1 | 129.55 (11) |
| C1—C2—H2 | 119.6 | N5—C11—S1 | 127.32 (11) |
| C4—C3—C2 | 119.73 (16) | C9—C12—H12A | 109.5 |
| C4—C3—H3 | 120.1 | C9—C12—H12B | 109.5 |
| C2—C3—H3 | 120.1 | H12A—C12—H12B | 109.5 |
| C5—C4—C3 | 119.98 (16) | C9—C12—H12C | 109.5 |
| C5—C4—H4 | 120.0 | H12A—C12—H12C | 109.5 |
| C3—C4—H4 | 120.0 | H12B—C12—H12C | 109.5 |
| C4—C5—C6 | 120.70 (15) | ||
| C9—N1—N2—C7 | 0.12 (16) | N2—N1—C9—C8 | −0.21 (16) |
| C9—N1—N2—C10 | 176.19 (12) | N2—N1—C9—C12 | 178.88 (14) |
| C11—N3—N4—C10 | −0.45 (16) | C7—C8—C9—N1 | 0.23 (18) |
| C6—C1—C2—C3 | −0.5 (3) | C7—C8—C9—C12 | −178.76 (16) |
| C7—C1—C2—C3 | −178.43 (16) | N3—N4—C10—N5 | −0.20 (15) |
| C1—C2—C3—C4 | 0.0 (3) | N3—N4—C10—N2 | −177.56 (12) |
| C2—C3—C4—C5 | 0.5 (3) | C11—N5—C10—N4 | 0.75 (15) |
| C3—C4—C5—C6 | −0.4 (3) | N6—N5—C10—N4 | 179.53 (12) |
| C4—C5—C6—C1 | −0.1 (2) | C11—N5—C10—N2 | 178.15 (12) |
| C2—C1—C6—C5 | 0.5 (2) | N6—N5—C10—N2 | −3.1 (2) |
| C7—C1—C6—C5 | 178.45 (13) | C7—N2—C10—N4 | 64.2 (2) |
| N1—N2—C7—C8 | 0.02 (16) | N1—N2—C10—N4 | −111.26 (16) |
| C10—N2—C7—C8 | −175.74 (13) | C7—N2—C10—N5 | −112.89 (16) |
| N1—N2—C7—C1 | −176.94 (12) | N1—N2—C10—N5 | 71.66 (18) |
| C10—N2—C7—C1 | 7.3 (2) | N4—N3—C11—N5 | 0.88 (15) |
| C2—C1—C7—C8 | −118.65 (19) | N4—N3—C11—S1 | −178.60 (11) |
| C6—C1—C7—C8 | 63.4 (2) | C10—N5—C11—N3 | −0.94 (14) |
| C2—C1—C7—N2 | 57.3 (2) | N6—N5—C11—N3 | −179.65 (12) |
| C6—C1—C7—N2 | −120.64 (15) | C10—N5—C11—S1 | 178.55 (10) |
| N2—C7—C8—C9 | −0.14 (16) | N6—N5—C11—S1 | −0.2 (2) |
| C1—C7—C8—C9 | 176.23 (15) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H3A···N1i | 0.91 | 1.94 | 2.8429 (17) | 169 |
| N6—H6A···S1ii | 0.91 | 2.55 | 3.4157 (13) | 159 |
| N6—H6B···N4iii | 0.91 | 2.43 | 3.0059 (18) | 122 |
Symmetry codes: (i) −x+3/2, y−1/2, −z+1/2; (ii) −x+2, −y+1, −z+1; (iii) −x+3/2, y+1/2, −z+1/2.
Footnotes
Supporting information for this paper is available from the IUCr electronic archives (Reference: HB7427).
References
- Brandenburg, K. & Putz, H. (2012). DIAMOND. Crystal Impact GbR, Bonn, Germany.
- Bruker (2014). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.
- Curtis, A. D. M. (2004). Science of Synthesis, 13, 603–639.
- Jin, J.-Y., Zhang, L.-X., Zhang, A.-J., Lei, X.-X. & Zhu, J.-H. (2007). Molecules, 12, 1596–1605. [DOI] [PMC free article] [PubMed]
- Joung, J. K. E. I., Ramm, E. I. & Pabo, C. O. (2000). Proc. Natl Acad. Sci. USA, 97, 7382–7387. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.
- Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S205698901500938X/hb7427sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901500938X/hb7427Isup2.hkl
Supporting information file. DOI: 10.1107/S205698901500938X/hb7427Isup3.cml
. DOI: 10.1107/S205698901500938X/hb7427fig1.tif
The title molecule showing labeling scheme and 50% probability ellipsoids.
b . DOI: 10.1107/S205698901500938X/hb7427fig2.tif
Packing viewed down the b axis. N—H⋯N and N—H⋯S hydrogen bonds are shown, respectively, as blue and purple dotted lines.
CCDC reference: 1401505
Additional supporting information: crystallographic information; 3D view; checkCIF report
